Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 2410002F23Rik-218ENSMUST00000188382 2301 ntAPPRIS P2 TSL 5 BASIC16.11■□□□□ 0.17
RaraP11416 Adam11-201ENSMUST00000068150 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
RaraP11416 Tigd5-201ENSMUST00000192937 4801 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
RaraP11416 Trmt10c-201ENSMUST00000059052 3002 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
RaraP11416 Brd3-203ENSMUST00000113941 5289 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
RaraP11416 Ccnf-201ENSMUST00000115390 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
RaraP11416 Repin1-201ENSMUST00000009420 3145 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
RaraP11416 Kif21a-203ENSMUST00000100304 6439 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
RaraP11416 Kif21a-202ENSMUST00000088614 6439 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
RaraP11416 Klf15-203ENSMUST00000203039 2482 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
RaraP11416 Mef2d-204ENSMUST00000119251 3488 ntTSL 5 BASIC16.1■□□□□ 0.17
RaraP11416 Csnk1g2-202ENSMUST00000085435 1825 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
RaraP11416 Nipal3-201ENSMUST00000102549 5153 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
RaraP11416 Dstyk-204ENSMUST00000188389 3232 ntTSL 5 BASIC16.1■□□□□ 0.17
RaraP11416 Pigv-201ENSMUST00000062118 3979 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
RaraP11416 Plod2-203ENSMUST00000160359 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
RaraP11416 Gm43205-201ENSMUST00000198622 1968 ntBASIC16.1■□□□□ 0.17
RaraP11416 Uros-203ENSMUST00000106145 1644 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
RaraP11416 Zcchc3-201ENSMUST00000099207 3073 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
RaraP11416 Mdk-204ENSMUST00000111309 771 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
RaraP11416 Gm7222-201ENSMUST00000117512 906 ntBASIC16.1■□□□□ 0.17
RaraP11416 Kxd1-202ENSMUST00000117580 696 ntTSL 5 BASIC16.1■□□□□ 0.17
RaraP11416 4930481B07Rik-201ENSMUST00000128160 1089 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
RaraP11416 Gm37335-201ENSMUST00000192656 447 ntTSL 5 BASIC16.1■□□□□ 0.17
RaraP11416 Gm10459-201ENSMUST00000202708 1155 ntBASIC16.1■□□□□ 0.17
RaraP11416 Gm45167-201ENSMUST00000208007 322 ntBASIC16.1■□□□□ 0.17
RaraP11416 Hmgb1-rs17-201ENSMUST00000210634 972 ntBASIC16.1■□□□□ 0.17
RaraP11416 Cd300c-201ENSMUST00000061637 690 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
RaraP11416 Cd300c-202ENSMUST00000092466 700 ntAPPRIS P5 TSL 5 BASIC16.1■□□□□ 0.17
RaraP11416 Alox5-201ENSMUST00000026795 2821 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
RaraP11416 Gm8237-201ENSMUST00000164484 2051 ntAPPRIS P5 TSL 5 BASIC16.1■□□□□ 0.17
RaraP11416 Mef2b-203ENSMUST00000110143 1312 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
RaraP11416 Atf7-202ENSMUST00000108828 2887 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
RaraP11416 Rad18-202ENSMUST00000077088 2577 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
RaraP11416 Shd-202ENSMUST00000223629 1430 ntAPPRIS P2 BASIC16.1■□□□□ 0.17
RaraP11416 Rnf180-203ENSMUST00000224662 2734 ntAPPRIS ALT2 BASIC16.1■□□□□ 0.17
RaraP11416 Ppp2r5b-201ENSMUST00000025695 2742 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
RaraP11416 H2-T23-201ENSMUST00000102678 1472 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
RaraP11416 Jakmip1-212ENSMUST00000174629 1941 ntTSL 5 BASIC16.09■□□□□ 0.17
RaraP11416 Ankrd27-202ENSMUST00000186245 1926 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
RaraP11416 Iffo1-202ENSMUST00000119527 2840 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
RaraP11416 App-204ENSMUST00000227021 3264 ntAPPRIS ALT2 BASIC16.09■□□□□ 0.17
RaraP11416 Cdk2-202ENSMUST00000026416 2406 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
RaraP11416 Lsm12-202ENSMUST00000107156 2015 ntTSL 5 BASIC16.09■□□□□ 0.17
RaraP11416 Gm3739-201ENSMUST00000165744 2011 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
RaraP11416 Ubxn11-201ENSMUST00000070246 2014 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
RaraP11416 C2cd2l-201ENSMUST00000065080 4337 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
RaraP11416 Tmem26-201ENSMUST00000080995 5048 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
RaraP11416 Pdia2-201ENSMUST00000039113 1721 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
RaraP11416 Tpm3-201ENSMUST00000029549 2230 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
RaraP11416 Ap1s2-202ENSMUST00000069041 2226 ntAPPRIS P4 TSL 1 (best) BASIC16.09■□□□□ 0.17
RaraP11416 Diras2-201ENSMUST00000057442 4786 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
RaraP11416 Ptk7-201ENSMUST00000044442 4255 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
RaraP11416 0610010K14Rik-207ENSMUST00000108577 659 ntTSL 5 BASIC16.09■□□□□ 0.17
RaraP11416 Gnptg-201ENSMUST00000038973 1234 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
RaraP11416 Ly6k-201ENSMUST00000060301 791 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
RaraP11416 Best4-ps-201ENSMUST00000129783 1380 ntBASIC16.09■□□□□ 0.17
RaraP11416 Hist1h1e-201ENSMUST00000062045 1930 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
RaraP11416 Igsf21-201ENSMUST00000039331 1979 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
RaraP11416 Fkbp10-201ENSMUST00000001595 2584 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
RaraP11416 Ralgapa1-201ENSMUST00000085385 7901 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
RaraP11416 Gtf2h1-201ENSMUST00000006774 2736 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
RaraP11416 Asprv1-201ENSMUST00000043400 1547 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
RaraP11416 Cyp4f18-201ENSMUST00000003574 1702 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
RaraP11416 Lrp11-203ENSMUST00000130590 3220 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.17
RaraP11416 Ifnar2-202ENSMUST00000089042 2580 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.17
RaraP11416 Snx8-205ENSMUST00000196566 1914 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.16
RaraP11416 Ablim3-201ENSMUST00000049378 4532 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
RaraP11416 Drap1-202ENSMUST00000113673 744 ntTSL 2 BASIC16.08■□□□□ 0.16
RaraP11416 Gm24589-201ENSMUST00000116692 94 ntBASIC16.08■□□□□ 0.16
RaraP11416 0610025J13Rik-201ENSMUST00000131324 652 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
RaraP11416 Tmem141-205ENSMUST00000142087 795 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
RaraP11416 Ubl5-204ENSMUST00000160682 489 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.16
RaraP11416 Gm10419-203ENSMUST00000197854 653 ntTSL 5 BASIC16.08■□□□□ 0.16
RaraP11416 5830487J09Rik-201ENSMUST00000198600 1256 ntTSL 5 BASIC16.08■□□□□ 0.16
RaraP11416 D930028M14Rik-201ENSMUST00000098678 1003 ntTSL 2 BASIC16.08■□□□□ 0.16
RaraP11416 Atp6v0c-202ENSMUST00000098862 796 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
RaraP11416 Nr1i3-203ENSMUST00000111328 1359 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
RaraP11416 Gm28111-201ENSMUST00000187786 1393 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
RaraP11416 AI661453-201ENSMUST00000037701 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
RaraP11416 Terf1-201ENSMUST00000027057 1581 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
RaraP11416 Elmod1-201ENSMUST00000048409 2605 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.16
RaraP11416 Kcnh4-201ENSMUST00000107361 3748 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.16
RaraP11416 Gpr160-207ENSMUST00000166278 1689 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
RaraP11416 Fars2-208ENSMUST00000224611 1750 ntAPPRIS P1 BASIC16.08■□□□□ 0.16
RaraP11416 Acp6-201ENSMUST00000090759 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
RaraP11416 Rnf4-207ENSMUST00000182709 3046 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
RaraP11416 Dr1-201ENSMUST00000031190 3085 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
RaraP11416 Adcy3-204ENSMUST00000127756 4672 ntAPPRIS P3 TSL 5 BASIC16.07■□□□□ 0.16
RaraP11416 Adck5-214ENSMUST00000162503 2040 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
RaraP11416 Fbxo21-201ENSMUST00000035579 3883 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
RaraP11416 AC167013.2-201ENSMUST00000228520 2684 ntBASIC16.07■□□□□ 0.16
RaraP11416 Ap4b1-202ENSMUST00000076599 2692 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
RaraP11416 Parg-202ENSMUST00000163350 3374 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
RaraP11416 Casc3-204ENSMUST00000169695 3741 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
RaraP11416 Dlc1-203ENSMUST00000098826 6241 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
RaraP11416 Gm11764-201ENSMUST00000120221 623 ntBASIC16.07■□□□□ 0.16
RaraP11416 Gm15173-201ENSMUST00000122049 433 ntBASIC16.07■□□□□ 0.16
RaraP11416 Gm15635-203ENSMUST00000148972 554 ntTSL 2 BASIC16.07■□□□□ 0.16
RaraP11416 Smarca5-ps-202ENSMUST00000171805 1284 ntBASIC16.07■□□□□ 0.16
Retrieved 100 of 76,532 protein–RNA pairs in 27.3 ms