Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Camsap2-202ENSMUST00000192001 6329 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
Cdc40Q9DC48 Dcakd-201ENSMUST00000021313 1744 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Cdc40Q9DC48 Cab39-202ENSMUST00000113360 3805 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Cdc40Q9DC48 Zfp606-201ENSMUST00000098822 4748 ntAPPRIS P3 TSL 1 (best) BASIC13.87□□□□□ -0.19
Cdc40Q9DC48 Phldb1-201ENSMUST00000034611 5461 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
Cdc40Q9DC48 Best4-ps-201ENSMUST00000129783 1380 ntBASIC13.87□□□□□ -0.19
Cdc40Q9DC48 Cpxm1-201ENSMUST00000028897 2366 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Cdc40Q9DC48 Adprhl1-201ENSMUST00000033825 1372 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Cdc40Q9DC48 Dis3-201ENSMUST00000042471 5150 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
Cdc40Q9DC48 Med7-203ENSMUST00000109232 2547 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Cdc40Q9DC48 Hoxd12-201ENSMUST00000001878 2534 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Cdc40Q9DC48 Fhad1os2-201ENSMUST00000152351 945 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
Cdc40Q9DC48 Gm18489-201ENSMUST00000172565 551 ntBASIC13.87□□□□□ -0.19
Cdc40Q9DC48 Gm20481-201ENSMUST00000173680 564 ntAPPRIS P1 TSL 3 BASIC13.87□□□□□ -0.19
Cdc40Q9DC48 5033428I22Rik-203ENSMUST00000210614 952 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
Cdc40Q9DC48 Kcnk16-201ENSMUST00000024155 916 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
Cdc40Q9DC48 Myo1c-204ENSMUST00000108431 4718 ntAPPRIS P2 TSL 1 (best) BASIC13.87□□□□□ -0.19
Cdc40Q9DC48 Lhx3-202ENSMUST00000054099 2184 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
Cdc40Q9DC48 Irf3-202ENSMUST00000107834 1429 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Cdc40Q9DC48 Nodal-201ENSMUST00000049339 2095 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Cdc40Q9DC48 Fstl1-201ENSMUST00000114763 3789 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Cdc40Q9DC48 Srsf11-204ENSMUST00000121326 3106 ntAPPRIS P4 TSL 5 BASIC13.87□□□□□ -0.19
Cdc40Q9DC48 Actn3-201ENSMUST00000006626 2880 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Cdc40Q9DC48 Gm5049-201ENSMUST00000195878 1590 ntBASIC13.87□□□□□ -0.19
Cdc40Q9DC48 Ablim3-201ENSMUST00000049378 4532 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Cdc40Q9DC48 Nrcam-202ENSMUST00000110748 6275 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
Cdc40Q9DC48 Gbp5-201ENSMUST00000090127 3055 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Cdc40Q9DC48 Col22a1-202ENSMUST00000159993 8809 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
Cdc40Q9DC48 Nabp1-205ENSMUST00000186684 2677 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
Cdc40Q9DC48 Ovca2-201ENSMUST00000071562 2670 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Cdc40Q9DC48 Hhat-201ENSMUST00000044190 2839 ntAPPRIS P2 TSL 1 (best) BASIC13.86□□□□□ -0.19
Cdc40Q9DC48 Arhgef9-217ENSMUST00000197364 1796 ntTSL 5 BASIC13.86□□□□□ -0.19
Cdc40Q9DC48 Espnl-202ENSMUST00000176156 2886 ntTSL 5 BASIC13.86□□□□□ -0.19
Cdc40Q9DC48 Fbxo5-201ENSMUST00000019907 1940 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Cdc40Q9DC48 Cabp1-201ENSMUST00000031519 1370 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
Cdc40Q9DC48 Gm12689-201ENSMUST00000094955 1359 ntAPPRIS P1 BASIC13.86□□□□□ -0.19
Cdc40Q9DC48 Car10-205ENSMUST00000107861 2613 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
Cdc40Q9DC48 Por-202ENSMUST00000122113 2606 ntTSL 2 BASIC13.86□□□□□ -0.19
Cdc40Q9DC48 Pkp2-201ENSMUST00000039408 2918 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Cdc40Q9DC48 Kcnh4-202ENSMUST00000107363 3948 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
Cdc40Q9DC48 Apol8-201ENSMUST00000070911 1838 ntAPPRIS P2 TSL 1 (best) BASIC13.86□□□□□ -0.19
Cdc40Q9DC48 Fam174b-201ENSMUST00000107456 2683 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Cdc40Q9DC48 Lmnb1-201ENSMUST00000025486 2843 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Cdc40Q9DC48 Dhdds-203ENSMUST00000105886 1015 ntTSL 5 BASIC13.86□□□□□ -0.19
Cdc40Q9DC48 Dio1-202ENSMUST00000106748 396 ntTSL 5 BASIC13.86□□□□□ -0.19
Cdc40Q9DC48 Siva1-202ENSMUST00000109755 333 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
Cdc40Q9DC48 Bola3-202ENSMUST00000120040 583 ntTSL 3 BASIC13.86□□□□□ -0.19
Cdc40Q9DC48 9130204K15Rik-201ENSMUST00000131441 867 ntTSL 5 BASIC13.86□□□□□ -0.19
Cdc40Q9DC48 Znhit1-206ENSMUST00000156963 1208 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
Cdc40Q9DC48 Tmem33-206ENSMUST00000162543 664 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
Cdc40Q9DC48 AC153527.1-201ENSMUST00000220412 602 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
Cdc40Q9DC48 Ly6d-201ENSMUST00000040404 744 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Cdc40Q9DC48 2210406O10Rik-201ENSMUST00000044964 937 ntTSL 5 BASIC13.86□□□□□ -0.19
Cdc40Q9DC48 Fam124a-201ENSMUST00000039064 3558 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
Cdc40Q9DC48 Dph5-204ENSMUST00000189799 1558 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
Cdc40Q9DC48 Suv39h2-201ENSMUST00000027956 4327 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Cdc40Q9DC48 Phospho2-202ENSMUST00000112266 2194 ntAPPRIS P1 TSL 3 BASIC13.86□□□□□ -0.19
Cdc40Q9DC48 Zscan2-201ENSMUST00000044115 2310 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Cdc40Q9DC48 Acss3-201ENSMUST00000044668 2494 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
Cdc40Q9DC48 Hps1-201ENSMUST00000026194 2647 ntAPPRIS P3 TSL 5 BASIC13.86□□□□□ -0.19
Cdc40Q9DC48 Ahdc1-202ENSMUST00000105914 5898 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
Cdc40Q9DC48 Strn4-201ENSMUST00000019220 3535 ntAPPRIS P4 TSL 1 (best) BASIC13.86□□□□□ -0.19
Cdc40Q9DC48 Usp4-201ENSMUST00000035237 3662 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
Cdc40Q9DC48 Atg9a-208ENSMUST00000189702 4110 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
Cdc40Q9DC48 Dcaf17-201ENSMUST00000064141 1905 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Cdc40Q9DC48 Hdac2-202ENSMUST00000105510 3250 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
Cdc40Q9DC48 Tango6-202ENSMUST00000211979 2722 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Cdc40Q9DC48 Abraxas1-202ENSMUST00000055245 2139 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Cdc40Q9DC48 Siglece-201ENSMUST00000032667 1849 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Cdc40Q9DC48 Rufy3-205ENSMUST00000198965 3536 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Cdc40Q9DC48 Cacnb1-201ENSMUST00000017552 3396 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Cdc40Q9DC48 Gm26560-201ENSMUST00000181240 2619 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Cdc40Q9DC48 Cfap69-205ENSMUST00000135252 2188 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
Cdc40Q9DC48 Ttll3-202ENSMUST00000038889 3114 ntAPPRIS ALT2 TSL 5 BASIC13.85□□□□□ -0.19
Cdc40Q9DC48 Rhot1-202ENSMUST00000055056 4260 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
Cdc40Q9DC48 Chchd6-202ENSMUST00000113550 1042 ntTSL 5 BASIC13.85□□□□□ -0.19
Cdc40Q9DC48 Gemin7-204ENSMUST00000122055 609 ntAPPRIS P1 TSL 3 BASIC13.85□□□□□ -0.19
Cdc40Q9DC48 Gm28308-201ENSMUST00000128102 752 ntAPPRIS P1 TSL 3 BASIC13.85□□□□□ -0.19
Cdc40Q9DC48 Ndufa1-201ENSMUST00000016571 419 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Cdc40Q9DC48 Ankrd13d-204ENSMUST00000167215 639 ntTSL 3 BASIC13.85□□□□□ -0.19
Cdc40Q9DC48 Rpl26-206ENSMUST00000167436 606 ntAPPRIS P2 TSL 1 (best) BASIC13.85□□□□□ -0.19
Cdc40Q9DC48 A430093F15Rik-205ENSMUST00000188480 509 ntTSL 3 BASIC13.85□□□□□ -0.19
Cdc40Q9DC48 Thap4-205ENSMUST00000189728 713 ntTSL 2 BASIC13.85□□□□□ -0.19
Cdc40Q9DC48 Gm44945-201ENSMUST00000206764 1187 ntBASIC13.85□□□□□ -0.19
Cdc40Q9DC48 Chchd6-201ENSMUST00000032172 1121 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Cdc40Q9DC48 Orc6-201ENSMUST00000034132 1287 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Cdc40Q9DC48 Timm10b-201ENSMUST00000058333 694 ntAPPRIS P2 TSL 1 (best) BASIC13.85□□□□□ -0.19
Cdc40Q9DC48 Ifngr2-201ENSMUST00000023687 3254 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Cdc40Q9DC48 Prnd-202ENSMUST00000110170 1969 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Cdc40Q9DC48 Ccdc154-202ENSMUST00000182292 1989 ntAPPRIS ALT2 TSL 5 BASIC13.85□□□□□ -0.19
Cdc40Q9DC48 Apoa4-201ENSMUST00000034585 1815 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Cdc40Q9DC48 Dhx34-203ENSMUST00000119102 4310 ntAPPRIS ALT2 TSL 5 BASIC13.85□□□□□ -0.19
Cdc40Q9DC48 Des-201ENSMUST00000027409 3028 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Cdc40Q9DC48 Gpr3-202ENSMUST00000105911 2518 ntAPPRIS P1 BASIC13.85□□□□□ -0.19
Cdc40Q9DC48 Rps6ka5-201ENSMUST00000043599 4406 ntAPPRIS P2 TSL 1 (best) BASIC13.84□□□□□ -0.19
Cdc40Q9DC48 BC037039-201ENSMUST00000192003 2205 ntBASIC13.84□□□□□ -0.19
Cdc40Q9DC48 Aldh3a1-201ENSMUST00000019246 1729 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Cdc40Q9DC48 Clgn-202ENSMUST00000109831 2293 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Cdc40Q9DC48 Trim3-201ENSMUST00000057525 3016 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Cdc40Q9DC48 Gm14221-202ENSMUST00000209603 1437 ntTSL 5 BASIC13.84□□□□□ -0.19
Retrieved 100 of 76,532 protein–RNA pairs in 28.2 ms