Protein–RNA interactions for Protein: Q99MT2

Msh4, MutS protein homolog 4, mousemouse

Predictions only

Length 958 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh4Q99MT2 Timm9-209ENSMUST00000221815 1193 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Msh4Q99MT2 Gm40977-203ENSMUST00000222324 886 ntTSL 2 BASIC14.55□□□□□ -0.08
Msh4Q99MT2 AC131709.1-201ENSMUST00000224731 1180 ntBASIC14.55□□□□□ -0.08
Msh4Q99MT2 AC147366.1-201ENSMUST00000227671 852 ntBASIC14.55□□□□□ -0.08
Msh4Q99MT2 Cda-201ENSMUST00000030535 846 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Msh4Q99MT2 BC031181-201ENSMUST00000040284 1047 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Msh4Q99MT2 Dnph1-201ENSMUST00000046497 1106 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Msh4Q99MT2 Nudt3-202ENSMUST00000062397 558 ntTSL 3 BASIC14.55□□□□□ -0.08
Msh4Q99MT2 Gm11873-201ENSMUST00000117877 1304 ntBASIC14.55□□□□□ -0.08
Msh4Q99MT2 Ube2j2-203ENSMUST00000105581 1391 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Msh4Q99MT2 Fgfr3-203ENSMUST00000114411 4225 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
Msh4Q99MT2 Ttc16-202ENSMUST00000091059 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
Msh4Q99MT2 Smyd5-201ENSMUST00000045693 2486 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Msh4Q99MT2 Smtnl2-202ENSMUST00000108500 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
Msh4Q99MT2 Impdh1-207ENSMUST00000162099 2580 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Msh4Q99MT2 Reep4-201ENSMUST00000047218 1565 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Msh4Q99MT2 Sgcd-201ENSMUST00000077221 1617 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Msh4Q99MT2 Ndufv1-201ENSMUST00000042497 1661 ntAPPRIS P2 TSL 1 (best) BASIC14.55□□□□□ -0.08
Msh4Q99MT2 Gm39027-201ENSMUST00000208560 2942 ntTSL 5 BASIC14.55□□□□□ -0.08
Msh4Q99MT2 Adamts7-201ENSMUST00000113059 5379 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
Msh4Q99MT2 Sidt2-201ENSMUST00000038488 4248 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Msh4Q99MT2 Cldn11-201ENSMUST00000046174 1870 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Msh4Q99MT2 Bcl2l14-206ENSMUST00000163589 2131 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
Msh4Q99MT2 Sfta3-ps-205ENSMUST00000220379 2187 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Msh4Q99MT2 Desi2-201ENSMUST00000027783 8802 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Msh4Q99MT2 Dok7-201ENSMUST00000050709 2498 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Msh4Q99MT2 Zbtb33-202ENSMUST00000115142 2567 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Msh4Q99MT2 Fam169b-201ENSMUST00000098378 2776 ntTSL 5 BASIC14.54□□□□□ -0.08
Msh4Q99MT2 Gm26852-201ENSMUST00000180691 5751 ntTSL 5 BASIC14.54□□□□□ -0.08
Msh4Q99MT2 Gm15467-201ENSMUST00000120582 445 ntBASIC14.54□□□□□ -0.08
Msh4Q99MT2 Gm15492-201ENSMUST00000156734 606 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Msh4Q99MT2 Gm20337-201ENSMUST00000219062 1118 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Msh4Q99MT2 Timm9-205ENSMUST00000221178 529 ntTSL 3 BASIC14.54□□□□□ -0.08
Msh4Q99MT2 Rpl8-201ENSMUST00000004072 862 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Msh4Q99MT2 Ndufs8-201ENSMUST00000075092 963 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Msh4Q99MT2 Chchd2-201ENSMUST00000094280 915 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Msh4Q99MT2 Anp32e-201ENSMUST00000015893 1381 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Msh4Q99MT2 Ccdc68-201ENSMUST00000043929 1618 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Msh4Q99MT2 R3hcc1-201ENSMUST00000118374 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Msh4Q99MT2 Il11ra1-202ENSMUST00000108040 1837 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
Msh4Q99MT2 Sphk1-204ENSMUST00000106386 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Msh4Q99MT2 Cd5l-201ENSMUST00000015998 2036 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Msh4Q99MT2 Cspp1-205ENSMUST00000122156 2535 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Msh4Q99MT2 Dsn1-202ENSMUST00000103130 2636 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Msh4Q99MT2 Spock1-203ENSMUST00000185905 2794 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Msh4Q99MT2 Gm26702-201ENSMUST00000181730 4570 ntTSL 5 BASIC14.54□□□□□ -0.08
Msh4Q99MT2 Arid3a-203ENSMUST00000105377 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Msh4Q99MT2 Wwc2-201ENSMUST00000057561 8678 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Msh4Q99MT2 Myh14-202ENSMUST00000107899 6390 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
Msh4Q99MT2 Islr2-204ENSMUST00000165276 3989 ntAPPRIS P3 TSL 2 BASIC14.53□□□□□ -0.08
Msh4Q99MT2 Crmp1-202ENSMUST00000114158 3051 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Msh4Q99MT2 Prnp-201ENSMUST00000091288 2184 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Msh4Q99MT2 Lmcd1-201ENSMUST00000032376 1730 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Msh4Q99MT2 Gm29676-201ENSMUST00000222396 1689 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Msh4Q99MT2 Ablim3-201ENSMUST00000049378 4532 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Msh4Q99MT2 Gm11127-201ENSMUST00000113742 1344 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Msh4Q99MT2 Synrg-201ENSMUST00000049714 3995 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
Msh4Q99MT2 Thap7-201ENSMUST00000100125 1248 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Msh4Q99MT2 Rpl36-ps8-201ENSMUST00000121187 315 ntBASIC14.53□□□□□ -0.08
Msh4Q99MT2 2200002J24Rik-201ENSMUST00000013227 333 ntAPPRIS P1 TSL 3 BASIC14.53□□□□□ -0.08
Msh4Q99MT2 Triqk-201ENSMUST00000143186 888 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Msh4Q99MT2 Fxyd5-208ENSMUST00000161805 1166 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
Msh4Q99MT2 Gm20496-202ENSMUST00000173770 523 ntTSL 5 BASIC14.53□□□□□ -0.08
Msh4Q99MT2 Gm5264-201ENSMUST00000190584 848 ntBASIC14.53□□□□□ -0.08
Msh4Q99MT2 Gm32031-203ENSMUST00000208993 649 ntTSL 2 BASIC14.53□□□□□ -0.08
Msh4Q99MT2 Stum-205ENSMUST00000211561 1063 ntAPPRIS ALT1 TSL 5 BASIC14.53□□□□□ -0.08
Msh4Q99MT2 Commd5-201ENSMUST00000068407 1037 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Msh4Q99MT2 Rnf7-202ENSMUST00000071301 334 ntTSL 2 BASIC14.53□□□□□ -0.08
Msh4Q99MT2 Syvn1-203ENSMUST00000134667 3159 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Msh4Q99MT2 Mkrn3-201ENSMUST00000094340 2547 ntAPPRIS P1 BASIC14.53□□□□□ -0.08
Msh4Q99MT2 Rspo4-201ENSMUST00000042217 2371 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Msh4Q99MT2 Fnip2-201ENSMUST00000076136 3775 ntAPPRIS P2 TSL 5 BASIC14.53□□□□□ -0.08
Msh4Q99MT2 Arhgef40-204ENSMUST00000182061 4756 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Msh4Q99MT2 Mrap2-203ENSMUST00000179313 2039 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
Msh4Q99MT2 Edem3-204ENSMUST00000191070 3127 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
Msh4Q99MT2 Cul7-201ENSMUST00000043464 5530 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Msh4Q99MT2 Dzip1-201ENSMUST00000004055 4079 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Msh4Q99MT2 Gyg-203ENSMUST00000178328 1698 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.08
Msh4Q99MT2 Slc39a11-201ENSMUST00000042657 2781 ntAPPRIS ALT2 TSL 2 BASIC14.52□□□□□ -0.08
Msh4Q99MT2 6030419C18Rik-202ENSMUST00000216294 1601 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Msh4Q99MT2 Dph5-204ENSMUST00000189799 1558 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.08
Msh4Q99MT2 Slit1-202ENSMUST00000166496 4556 ntTSL 5 BASIC14.52□□□□□ -0.08
Msh4Q99MT2 Palm3-201ENSMUST00000055077 2452 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Msh4Q99MT2 Slc38a7-201ENSMUST00000040481 3333 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Msh4Q99MT2 Slc16a6-202ENSMUST00000070152 4219 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.08
Msh4Q99MT2 Best4-ps-201ENSMUST00000129783 1380 ntBASIC14.52□□□□□ -0.08
Msh4Q99MT2 AC131586.3-201ENSMUST00000228355 1367 ntBASIC14.52□□□□□ -0.08
Msh4Q99MT2 Msantd3-202ENSMUST00000064807 1378 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Msh4Q99MT2 Ltv1-201ENSMUST00000019950 2297 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Msh4Q99MT2 Med16-201ENSMUST00000105378 3197 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.08
Msh4Q99MT2 Trim3-201ENSMUST00000057525 3016 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Msh4Q99MT2 E530001F21Rik-201ENSMUST00000120991 730 ntBASIC14.52□□□□□ -0.09
Msh4Q99MT2 Tpt1-205ENSMUST00000142061 996 ntTSL 5 BASIC14.52□□□□□ -0.09
Msh4Q99MT2 Pcp2-205ENSMUST00000142431 524 ntTSL 2 BASIC14.52□□□□□ -0.09
Msh4Q99MT2 Ascl5-201ENSMUST00000180436 567 ntAPPRIS P1 BASIC14.52□□□□□ -0.09
Msh4Q99MT2 Gsdmcl2-204ENSMUST00000186026 736 ntBASIC14.52□□□□□ -0.09
Msh4Q99MT2 Gsdmcl1-202ENSMUST00000190937 735 ntBASIC14.52□□□□□ -0.09
Msh4Q99MT2 Ndufv2-201ENSMUST00000024909 927 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
Msh4Q99MT2 Pfn3-201ENSMUST00000054146 545 ntAPPRIS P1 BASIC14.52□□□□□ -0.09
Msh4Q99MT2 Ndufv3-202ENSMUST00000064798 485 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
Retrieved 100 of 76,532 protein–RNA pairs in 73.5 ms