Protein–RNA interactions for Protein: Q5NCC9

Trim58, E3 ubiquitin-protein ligase TRIM58, mousemouse

Predictions only

Length 485 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim58Q5NCC9 Zfp787-206ENSMUST00000208746 535 ntTSL 2 BASIC18.86■□□□□ 0.61
Trim58Q5NCC9 Neurl2-201ENSMUST00000042775 1014 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Trim58Q5NCC9 Nes-203ENSMUST00000160694 5958 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
Trim58Q5NCC9 Gm37297-201ENSMUST00000192974 2384 ntBASIC18.86■□□□□ 0.61
Trim58Q5NCC9 Trnt1-201ENSMUST00000057578 2283 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Trim58Q5NCC9 Rbbp9-201ENSMUST00000028915 2170 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Trim58Q5NCC9 Adck5-214ENSMUST00000162503 2040 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
Trim58Q5NCC9 Ubxn11-201ENSMUST00000070246 2014 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
Trim58Q5NCC9 Sphk1-205ENSMUST00000106387 1957 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
Trim58Q5NCC9 Plcl1-201ENSMUST00000042986 6580 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Trim58Q5NCC9 Gm26578-201ENSMUST00000181702 4611 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Trim58Q5NCC9 Dse-201ENSMUST00000048010 4389 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Trim58Q5NCC9 Ism2-202ENSMUST00000125733 2526 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
Trim58Q5NCC9 Eif3f-201ENSMUST00000033342 2514 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Trim58Q5NCC9 Ankrd13b-202ENSMUST00000092892 3336 ntAPPRIS P2 TSL 5 BASIC18.85■□□□□ 0.61
Trim58Q5NCC9 Mpped1-201ENSMUST00000046168 3265 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Trim58Q5NCC9 Tor1aip2-205ENSMUST00000111757 6118 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Trim58Q5NCC9 Nkapl-201ENSMUST00000068235 1463 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
Trim58Q5NCC9 Ralgds-203ENSMUST00000113893 3683 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Trim58Q5NCC9 Tubgcp4-215ENSMUST00000186659 2915 ntAPPRIS ALT1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Trim58Q5NCC9 Gm5069-201ENSMUST00000050581 1328 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Trim58Q5NCC9 Rplp2-203ENSMUST00000106004 421 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
Trim58Q5NCC9 Cbx6-201ENSMUST00000109623 996 ntTSL 5 BASIC18.85■□□□□ 0.61
Trim58Q5NCC9 Gzmm-201ENSMUST00000020549 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Trim58Q5NCC9 Ndufs6-204ENSMUST00000223293 757 ntTSL 2 BASIC18.85■□□□□ 0.61
Trim58Q5NCC9 Mrpl20-201ENSMUST00000030942 764 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Trim58Q5NCC9 Bex3-201ENSMUST00000053540 930 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
Trim58Q5NCC9 Bcs1l-201ENSMUST00000027358 1890 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Trim58Q5NCC9 Cldn11-201ENSMUST00000046174 1870 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Trim58Q5NCC9 Ap4b1-204ENSMUST00000106824 2412 ntTSL 5 BASIC18.85■□□□□ 0.61
Trim58Q5NCC9 Cdkn1b-201ENSMUST00000003115 2393 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Trim58Q5NCC9 Gm9913-201ENSMUST00000066157 2793 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
Trim58Q5NCC9 Cry2-202ENSMUST00000111278 2160 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Trim58Q5NCC9 Aph1a-202ENSMUST00000056710 1601 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Trim58Q5NCC9 Usp27x-203ENSMUST00000191497 4273 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
Trim58Q5NCC9 Snrpn-202ENSMUST00000098402 2076 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
Trim58Q5NCC9 Gm9856-201ENSMUST00000217077 2578 ntBASIC18.85■□□□□ 0.61
Trim58Q5NCC9 Gpank1-202ENSMUST00000165306 1518 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Trim58Q5NCC9 Vldlr-208ENSMUST00000172302 3855 ntAPPRIS ALT1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Trim58Q5NCC9 AC162938.1-201ENSMUST00000213140 2323 ntBASIC18.84■□□□□ 0.61
Trim58Q5NCC9 Gm26850-201ENSMUST00000181653 2669 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Trim58Q5NCC9 Cds1-201ENSMUST00000031273 3924 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Trim58Q5NCC9 Rps19-201ENSMUST00000108428 1284 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Trim58Q5NCC9 Cops9-202ENSMUST00000112999 653 ntTSL 3 BASIC18.84■□□□□ 0.61
Trim58Q5NCC9 Gm16838-201ENSMUST00000144594 816 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Trim58Q5NCC9 Cystm1-205ENSMUST00000152804 445 ntAPPRIS P2 TSL 3 BASIC18.84■□□□□ 0.61
Trim58Q5NCC9 Ccl27a-217ENSMUST00000155240 343 ntTSL 2 BASIC18.84■□□□□ 0.61
Trim58Q5NCC9 Hrh3-204ENSMUST00000165248 1224 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
Trim58Q5NCC9 Gm16845-202ENSMUST00000216270 567 ntTSL 2 BASIC18.84■□□□□ 0.61
Trim58Q5NCC9 AC138767.1-201ENSMUST00000222661 415 ntBASIC18.84■□□□□ 0.61
Trim58Q5NCC9 Hist1h4j-201ENSMUST00000087714 774 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
Trim58Q5NCC9 Pard6a-202ENSMUST00000098444 1273 ntTSL 2 BASIC18.84■□□□□ 0.61
Trim58Q5NCC9 Hr-201ENSMUST00000022691 5487 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Trim58Q5NCC9 Mus81-202ENSMUST00000124334 2067 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Trim58Q5NCC9 Cbl-201ENSMUST00000037644 4901 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Trim58Q5NCC9 Fam131a-201ENSMUST00000056518 2432 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Trim58Q5NCC9 Cep170-205ENSMUST00000192961 2708 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Trim58Q5NCC9 Plekha4-201ENSMUST00000051810 2660 ntAPPRIS P2 TSL 5 BASIC18.84■□□□□ 0.61
Trim58Q5NCC9 Lmf1-202ENSMUST00000116641 1858 ntAPPRIS P2 TSL 5 BASIC18.84■□□□□ 0.61
Trim58Q5NCC9 Lmf1-201ENSMUST00000063344 1861 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
Trim58Q5NCC9 Fam133b-201ENSMUST00000115527 1491 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Trim58Q5NCC9 Tmbim6-201ENSMUST00000023749 2452 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Trim58Q5NCC9 Lipo3-202ENSMUST00000112508 2839 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Trim58Q5NCC9 1700012B07Rik-202ENSMUST00000106674 2035 ntAPPRIS P4 TSL 1 (best) BASIC18.83■□□□□ 0.61
Trim58Q5NCC9 Eif2d-202ENSMUST00000068805 2009 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.61
Trim58Q5NCC9 Sirpa-203ENSMUST00000103202 3982 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.61
Trim58Q5NCC9 Pwwp2a-201ENSMUST00000061070 3277 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.61
Trim58Q5NCC9 0610009E02Rik-201ENSMUST00000133463 1609 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
Trim58Q5NCC9 Tigd5-201ENSMUST00000192937 4801 ntAPPRIS P1 BASIC18.83■□□□□ 0.6
Trim58Q5NCC9 Necap2-201ENSMUST00000030760 1906 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Trim58Q5NCC9 Nosip-202ENSMUST00000107829 972 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
Trim58Q5NCC9 Rpl36-ps8-201ENSMUST00000121187 315 ntBASIC18.83■□□□□ 0.6
Trim58Q5NCC9 Mkln1os-202ENSMUST00000144232 964 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Trim58Q5NCC9 2010010A06Rik-203ENSMUST00000190465 650 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Trim58Q5NCC9 Gm2272-201ENSMUST00000194903 582 ntBASIC18.83■□□□□ 0.6
Trim58Q5NCC9 Lce3c-201ENSMUST00000055375 567 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Trim58Q5NCC9 Gm16796-201ENSMUST00000126086 3172 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Trim58Q5NCC9 Gnb2-212ENSMUST00000150063 1569 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Trim58Q5NCC9 Fstl1-201ENSMUST00000114763 3789 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Trim58Q5NCC9 Fam169b-206ENSMUST00000210558 2815 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.6
Trim58Q5NCC9 Cadps2-206ENSMUST00000115361 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
Trim58Q5NCC9 Senp6-202ENSMUST00000164859 3853 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
Trim58Q5NCC9 Lsm12-202ENSMUST00000107156 2015 ntTSL 5 BASIC18.83■□□□□ 0.6
Trim58Q5NCC9 Ahcy-201ENSMUST00000054607 2543 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trim58Q5NCC9 Smtnl2-202ENSMUST00000108500 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trim58Q5NCC9 Adarb1-202ENSMUST00000098374 6584 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Trim58Q5NCC9 Ntng2-204ENSMUST00000102873 1593 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trim58Q5NCC9 Mocs1-201ENSMUST00000024797 2646 ntTSL 5 BASIC18.82■□□□□ 0.6
Trim58Q5NCC9 Nrxn1-209ENSMUST00000161402 4953 ntTSL 5 BASIC18.82■□□□□ 0.6
Trim58Q5NCC9 Mon1b-201ENSMUST00000035777 4998 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trim58Q5NCC9 Ptpa-208ENSMUST00000131476 989 ntTSL 2 BASIC18.82■□□□□ 0.6
Trim58Q5NCC9 Gm12981-201ENSMUST00000131733 622 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Trim58Q5NCC9 Gm11615-201ENSMUST00000156205 818 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Trim58Q5NCC9 Caly-202ENSMUST00000166758 1220 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trim58Q5NCC9 Vkorc1-201ENSMUST00000033074 748 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trim58Q5NCC9 Ndufv3-202ENSMUST00000064798 485 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trim58Q5NCC9 Eldr-203ENSMUST00000130392 1540 ntTSL 2 BASIC18.82■□□□□ 0.6
Trim58Q5NCC9 Anxa4-201ENSMUST00000001187 2002 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trim58Q5NCC9 Caln1-203ENSMUST00000111288 9327 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trim58Q5NCC9 Gm10676-201ENSMUST00000098778 3221 ntBASIC18.82■□□□□ 0.6
Retrieved 100 of 76,532 protein–RNA pairs in 59.8 ms