Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Surf2-201ENSMUST00000015017 1203 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Ddb1Q3U1J4 Syce3-202ENSMUST00000167959 480 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Ddb1Q3U1J4 1700037F24Rik-201ENSMUST00000181254 973 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Ddb1Q3U1J4 1700094J05Rik-202ENSMUST00000190491 997 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Ddb1Q3U1J4 Gm45331-201ENSMUST00000209868 554 ntBASIC18.79■□□□□ 0.6
Ddb1Q3U1J4 Gm33045-202ENSMUST00000210049 975 ntTSL 5 BASIC18.79■□□□□ 0.6
Ddb1Q3U1J4 AC139580.1-202ENSMUST00000223574 928 ntBASIC18.79■□□□□ 0.6
Ddb1Q3U1J4 Ube2i-201ENSMUST00000049911 1138 ntAPPRIS P1 TSL 3 BASIC18.79■□□□□ 0.6
Ddb1Q3U1J4 Kcnip2-203ENSMUST00000086993 1005 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Ddb1Q3U1J4 Ak3-201ENSMUST00000025696 2809 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Ddb1Q3U1J4 Rnf170-209ENSMUST00000209300 1881 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Ddb1Q3U1J4 Prodh2-201ENSMUST00000058280 1853 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Ddb1Q3U1J4 Zcchc4-203ENSMUST00000113904 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Ddb1Q3U1J4 Ghdc-201ENSMUST00000017891 2462 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Ddb1Q3U1J4 Zdhhc23-201ENSMUST00000036321 1380 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Ddb1Q3U1J4 Wipf1-201ENSMUST00000094681 4728 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Ddb1Q3U1J4 Zc3hc1-210ENSMUST00000152391 1673 ntTSL 5 BASIC18.79■□□□□ 0.6
Ddb1Q3U1J4 Mettl22-201ENSMUST00000046470 1825 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Ddb1Q3U1J4 Gm42473-201ENSMUST00000201056 2291 ntBASIC18.79■□□□□ 0.6
Ddb1Q3U1J4 Nadk-203ENSMUST00000105613 3152 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Ddb1Q3U1J4 Man2a2-201ENSMUST00000098346 6554 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Ddb1Q3U1J4 Nfib-205ENSMUST00000107247 3267 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
Ddb1Q3U1J4 Golga7b-201ENSMUST00000087123 2823 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Ddb1Q3U1J4 Kcns2-201ENSMUST00000072868 5456 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Ddb1Q3U1J4 Snrpa-202ENSMUST00000122202 1336 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Ddb1Q3U1J4 Tead2-203ENSMUST00000107801 3396 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
Ddb1Q3U1J4 Lzts2-203ENSMUST00000179108 2781 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Ddb1Q3U1J4 Zfp281-201ENSMUST00000047734 4933 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Ddb1Q3U1J4 Cyp4x1os-201ENSMUST00000153951 2003 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Ddb1Q3U1J4 Osr1-201ENSMUST00000057021 2012 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Ddb1Q3U1J4 Coro2a-202ENSMUST00000107756 4154 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
Ddb1Q3U1J4 Large2-201ENSMUST00000068586 2445 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
Ddb1Q3U1J4 Gm11899-201ENSMUST00000142373 745 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Ddb1Q3U1J4 Fkbp2-202ENSMUST00000177752 627 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Ddb1Q3U1J4 AA619741-201ENSMUST00000195095 646 ntBASIC18.78■□□□□ 0.6
Ddb1Q3U1J4 Gm42921-201ENSMUST00000196670 655 ntTSL 2 BASIC18.78■□□□□ 0.6
Ddb1Q3U1J4 Hgfac-201ENSMUST00000030985 2135 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Ddb1Q3U1J4 Was-201ENSMUST00000033505 2114 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Ddb1Q3U1J4 Rph3al-202ENSMUST00000066504 988 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Ddb1Q3U1J4 Olfr373-201ENSMUST00000074540 945 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
Ddb1Q3U1J4 Cox6b1-201ENSMUST00000075738 618 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Ddb1Q3U1J4 Mxra8os-201ENSMUST00000097740 687 ntBASIC18.78■□□□□ 0.6
Ddb1Q3U1J4 Ccdc154-202ENSMUST00000182292 1989 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
Ddb1Q3U1J4 Gm3045-201ENSMUST00000212844 1825 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
Ddb1Q3U1J4 Elp6-201ENSMUST00000068071 2219 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Ddb1Q3U1J4 Krt20-201ENSMUST00000017743 1927 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Ddb1Q3U1J4 Ostf1-201ENSMUST00000025631 2726 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Ddb1Q3U1J4 Lamp2-203ENSMUST00000074913 2184 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Ddb1Q3U1J4 Zscan12-202ENSMUST00000099720 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Ddb1Q3U1J4 Kcnj8-201ENSMUST00000032374 2269 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Ddb1Q3U1J4 Uts2r-201ENSMUST00000039044 1703 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
Ddb1Q3U1J4 Lrch3-211ENSMUST00000170899 2752 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Ddb1Q3U1J4 Gm3373-202ENSMUST00000177556 1955 ntAPPRIS P5 TSL 5 BASIC18.77■□□□□ 0.6
Ddb1Q3U1J4 Gm3500-201ENSMUST00000177986 1955 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
Ddb1Q3U1J4 Hif3a-201ENSMUST00000037762 2206 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
Ddb1Q3U1J4 Slc44a1-201ENSMUST00000102911 3102 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Ddb1Q3U1J4 Dctd-203ENSMUST00000170263 2096 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Ddb1Q3U1J4 Hsd17b12-201ENSMUST00000028619 1902 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Ddb1Q3U1J4 Tmco4-202ENSMUST00000050949 3318 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Ddb1Q3U1J4 Gm15393-201ENSMUST00000120499 219 ntBASIC18.77■□□□□ 0.6
Ddb1Q3U1J4 1700001C02Rik-203ENSMUST00000127815 660 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Ddb1Q3U1J4 2810429I04Rik-210ENSMUST00000189464 868 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Ddb1Q3U1J4 AC155252.1-201ENSMUST00000226462 1208 ntBASIC18.77■□□□□ 0.6
Ddb1Q3U1J4 Tmem253-203ENSMUST00000227295 704 ntAPPRIS ALT2 BASIC18.77■□□□□ 0.6
Ddb1Q3U1J4 AC155729.1-201ENSMUST00000227758 544 ntBASIC18.77■□□□□ 0.6
Ddb1Q3U1J4 Adra2a-201ENSMUST00000036700 3801 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
Ddb1Q3U1J4 Scgb3a2-201ENSMUST00000043803 842 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Ddb1Q3U1J4 Hist1h3b-201ENSMUST00000091703 620 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
Ddb1Q3U1J4 Arrdc5-201ENSMUST00000097303 1054 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Ddb1Q3U1J4 Sdf4-202ENSMUST00000097734 973 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Ddb1Q3U1J4 Shank3-203ENSMUST00000109309 7365 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Ddb1Q3U1J4 Sirt5-206ENSMUST00000221481 1548 ntTSL 5 BASIC18.77■□□□□ 0.6
Ddb1Q3U1J4 Bclaf3-201ENSMUST00000057180 2513 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Ddb1Q3U1J4 Tm9sf1-203ENSMUST00000121791 2148 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
Ddb1Q3U1J4 Crym-201ENSMUST00000033198 1383 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Ddb1Q3U1J4 Adrb2-201ENSMUST00000053640 2143 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
Ddb1Q3U1J4 Rnf145-201ENSMUST00000019333 3570 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Ddb1Q3U1J4 Ptcd2-201ENSMUST00000022153 1704 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Ddb1Q3U1J4 Arhgef11-201ENSMUST00000039476 6776 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Ddb1Q3U1J4 E130307A14Rik-213ENSMUST00000155482 2803 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
Ddb1Q3U1J4 Actg1-204ENSMUST00000106215 1827 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Ddb1Q3U1J4 Mfsd4b1-201ENSMUST00000163705 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Ddb1Q3U1J4 Tead3-205ENSMUST00000154873 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Ddb1Q3U1J4 Med4-201ENSMUST00000022705 1328 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Ddb1Q3U1J4 Tfdp2-206ENSMUST00000185644 2646 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
Ddb1Q3U1J4 Myh7b-201ENSMUST00000092995 6163 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
Ddb1Q3U1J4 Gm5763-201ENSMUST00000155951 1530 ntBASIC18.76■□□□□ 0.59
Ddb1Q3U1J4 Prkg1-206ENSMUST00000182685 1628 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Ddb1Q3U1J4 Ypel3-202ENSMUST00000106356 785 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
Ddb1Q3U1J4 Rapgef3os2-201ENSMUST00000124374 920 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Ddb1Q3U1J4 C8g-201ENSMUST00000015227 822 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Ddb1Q3U1J4 Ndufaf2-201ENSMUST00000163558 678 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Ddb1Q3U1J4 Zfp414-204ENSMUST00000166627 1211 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Ddb1Q3U1J4 Klk11-202ENSMUST00000171458 1260 ntAPPRIS P3 TSL 2 BASIC18.76■□□□□ 0.59
Ddb1Q3U1J4 Mturn-202ENSMUST00000187701 503 ntTSL 5 BASIC18.76■□□□□ 0.59
Ddb1Q3U1J4 Gm33320-201ENSMUST00000192232 530 ntBASIC18.76■□□□□ 0.59
Ddb1Q3U1J4 4930449I04Rik-201ENSMUST00000198191 1123 ntBASIC18.76■□□□□ 0.59
Ddb1Q3U1J4 AC159474.1-201ENSMUST00000218454 374 ntTSL 3 BASIC18.76■□□□□ 0.59
Ddb1Q3U1J4 4930518P08Rik-201ENSMUST00000221281 1187 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Ddb1Q3U1J4 Prss41-201ENSMUST00000024926 1128 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Retrieved 100 of 76,532 protein–RNA pairs in 38.5 ms