Protein–RNA interactions for Protein: O88609

Lmx1b, LIM homeobox transcription factor 1-beta, mousemouse

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lmx1bO88609 Ppp4r4-201ENSMUST00000021631 3964 ntAPPRIS P2 TSL 1 (best) BASIC13.52□□□□□ -0.24
Lmx1bO88609 Ptprs-211ENSMUST00000223859 5588 ntBASIC13.52□□□□□ -0.24
Lmx1bO88609 Kcnn1-208ENSMUST00000212611 2528 ntAPPRIS P2 TSL 1 (best) BASIC13.52□□□□□ -0.24
Lmx1bO88609 Narfl-201ENSMUST00000002350 2555 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
Lmx1bO88609 Kif21a-203ENSMUST00000100304 6439 ntAPPRIS ALT2 TSL 5 BASIC13.52□□□□□ -0.24
Lmx1bO88609 Kif21a-202ENSMUST00000088614 6439 ntAPPRIS ALT2 TSL 5 BASIC13.52□□□□□ -0.24
Lmx1bO88609 Hsph1-209ENSMUST00000202089 3054 ntTSL 5 BASIC13.52□□□□□ -0.24
Lmx1bO88609 Mpped1-201ENSMUST00000046168 3265 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
Lmx1bO88609 Slc31a2-203ENSMUST00000107468 743 ntAPPRIS ALT1 TSL 5 BASIC13.52□□□□□ -0.25
Lmx1bO88609 A530058N18Rik-205ENSMUST00000143993 550 ntTSL 3 BASIC13.52□□□□□ -0.25
Lmx1bO88609 Bcl2l2-204ENSMUST00000172844 498 ntTSL 5 BASIC13.52□□□□□ -0.25
Lmx1bO88609 Gm10605-201ENSMUST00000182342 665 ntTSL 3 BASIC13.52□□□□□ -0.25
Lmx1bO88609 Gm30684-201ENSMUST00000205632 600 ntTSL 3 BASIC13.52□□□□□ -0.25
Lmx1bO88609 Sbk2-201ENSMUST00000032598 1139 ntAPPRIS P1 TSL 3 BASIC13.52□□□□□ -0.25
Lmx1bO88609 A130006I12Rik-201ENSMUST00000091396 408 ntBASIC13.52□□□□□ -0.25
Lmx1bO88609 Olfr615-201ENSMUST00000098198 942 ntAPPRIS P1 BASIC13.52□□□□□ -0.25
Lmx1bO88609 Ndufab1-203ENSMUST00000123296 1416 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Lmx1bO88609 Lsp1-203ENSMUST00000105966 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
Lmx1bO88609 Fam170b-201ENSMUST00000104926 1694 ntAPPRIS P1 TSL 2 BASIC13.52□□□□□ -0.25
Lmx1bO88609 Dnase2a-201ENSMUST00000003910 1715 ntAPPRIS P2 TSL 1 (best) BASIC13.52□□□□□ -0.25
Lmx1bO88609 Gm44443-201ENSMUST00000204396 5633 ntBASIC13.52□□□□□ -0.25
Lmx1bO88609 Arl6ip1-201ENSMUST00000032888 2171 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Lmx1bO88609 Mark2-209ENSMUST00000165965 2874 ntAPPRIS P4 TSL 1 (best) BASIC13.52□□□□□ -0.25
Lmx1bO88609 Zfp36l2-201ENSMUST00000060366 3530 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Lmx1bO88609 Asic1-201ENSMUST00000023758 4114 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Lmx1bO88609 Crtc3-201ENSMUST00000122255 5115 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Lmx1bO88609 Fam8a1-201ENSMUST00000099547 3664 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Lmx1bO88609 Phldb1-211ENSMUST00000135436 2844 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Lmx1bO88609 Irf7-201ENSMUST00000026571 1916 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
Lmx1bO88609 Rapgef6-205ENSMUST00000108895 1829 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Lmx1bO88609 Dcp1b-201ENSMUST00000073909 1748 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
Lmx1bO88609 Gyg-203ENSMUST00000178328 1698 ntAPPRIS P2 TSL 1 (best) BASIC13.51□□□□□ -0.25
Lmx1bO88609 Pdzd11-201ENSMUST00000015812 1626 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Lmx1bO88609 Ing4-201ENSMUST00000032480 1629 ntAPPRIS P2 TSL 1 (best) BASIC13.51□□□□□ -0.25
Lmx1bO88609 Arhgap11a-204ENSMUST00000110949 4458 ntAPPRIS P2 TSL 5 BASIC13.51□□□□□ -0.25
Lmx1bO88609 Stk11-202ENSMUST00000105370 1474 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Lmx1bO88609 Gm13410-201ENSMUST00000117058 1415 ntBASIC13.51□□□□□ -0.25
Lmx1bO88609 1500011B03Rik-202ENSMUST00000112160 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
Lmx1bO88609 4933412A08Rik-201ENSMUST00000061046 1343 ntBASIC13.51□□□□□ -0.25
Lmx1bO88609 Cbx6-201ENSMUST00000109623 996 ntTSL 5 BASIC13.51□□□□□ -0.25
Lmx1bO88609 Il15ra-206ENSMUST00000114834 784 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
Lmx1bO88609 Lgals3-203ENSMUST00000146468 1072 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Lmx1bO88609 Rpph1-201ENSMUST00000175096 319 ntBASIC13.51□□□□□ -0.25
Lmx1bO88609 Gm43397-201ENSMUST00000196422 481 ntTSL 3 BASIC13.51□□□□□ -0.25
Lmx1bO88609 Gm29683-202ENSMUST00000208511 720 ntTSL 3 BASIC13.51□□□□□ -0.25
Lmx1bO88609 Tst-201ENSMUST00000058659 1096 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Lmx1bO88609 1700086L19Rik-201ENSMUST00000095617 706 ntBASIC13.51□□□□□ -0.25
Lmx1bO88609 Meis2-204ENSMUST00000110906 3229 ntTSL 2 BASIC13.51□□□□□ -0.25
Lmx1bO88609 Ssfa2-202ENSMUST00000111785 5168 ntAPPRIS P2 TSL 1 (best) BASIC13.51□□□□□ -0.25
Lmx1bO88609 Unc5d-202ENSMUST00000209401 3081 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Lmx1bO88609 Unc5d-203ENSMUST00000210298 3060 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Lmx1bO88609 Unc5d-205ENSMUST00000211448 3087 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Lmx1bO88609 Npnt-206ENSMUST00000117811 4532 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
Lmx1bO88609 Krt2-201ENSMUST00000023712 2613 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Lmx1bO88609 Cpeb3-201ENSMUST00000079754 5899 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
Lmx1bO88609 Fnip2-201ENSMUST00000076136 3775 ntAPPRIS P2 TSL 5 BASIC13.51□□□□□ -0.25
Lmx1bO88609 Dmkn-202ENSMUST00000054427 2034 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
Lmx1bO88609 Acvrl1-204ENSMUST00000120028 1932 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Lmx1bO88609 Ldb3-208ENSMUST00000228044 1883 ntAPPRIS ALT2 BASIC13.5□□□□□ -0.25
Lmx1bO88609 Gjd2-201ENSMUST00000090275 2879 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Lmx1bO88609 Trappc12-203ENSMUST00000170994 2818 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Lmx1bO88609 Shpk-201ENSMUST00000006105 2808 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Lmx1bO88609 Adamts17-201ENSMUST00000098382 6025 ntAPPRIS P2 TSL 5 BASIC13.5□□□□□ -0.25
Lmx1bO88609 Nabp1-205ENSMUST00000186684 2677 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Lmx1bO88609 Cep63-201ENSMUST00000093791 2696 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Lmx1bO88609 Gm13344-201ENSMUST00000137714 1557 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Lmx1bO88609 Nrxn1-204ENSMUST00000159778 3414 ntTSL 5 BASIC13.5□□□□□ -0.25
Lmx1bO88609 Lrp4-201ENSMUST00000028689 7926 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Lmx1bO88609 Tmc8-203ENSMUST00000117781 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
Lmx1bO88609 Akt2-202ENSMUST00000085917 1392 ntTSL 5 BASIC13.5□□□□□ -0.25
Lmx1bO88609 Lmbr1-204ENSMUST00000198105 2274 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Lmx1bO88609 Kif12-201ENSMUST00000030042 2250 ntAPPRIS P2 TSL 1 (best) BASIC13.5□□□□□ -0.25
Lmx1bO88609 Gm26728-202ENSMUST00000203423 1333 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Lmx1bO88609 Coq10a-205ENSMUST00000220027 1307 ntAPPRIS ALT2 TSL 5 BASIC13.5□□□□□ -0.25
Lmx1bO88609 Rpl34-ps1-201ENSMUST00000121998 354 ntBASIC13.5□□□□□ -0.25
Lmx1bO88609 Tmprss5-204ENSMUST00000167095 1146 ntAPPRIS ALT2 TSL 5 BASIC13.5□□□□□ -0.25
Lmx1bO88609 Gm17251-201ENSMUST00000170103 925 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Lmx1bO88609 Rian-216ENSMUST00000183215 880 ntTSL 3 BASIC13.5□□□□□ -0.25
Lmx1bO88609 Cdipt-205ENSMUST00000206450 951 ntTSL 5 BASIC13.5□□□□□ -0.25
Lmx1bO88609 AC139382.1-201ENSMUST00000221402 498 ntBASIC13.5□□□□□ -0.25
Lmx1bO88609 Prdx4-201ENSMUST00000026328 990 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Lmx1bO88609 Gpr146-202ENSMUST00000053120 1040 ntBASIC13.5□□□□□ -0.25
Lmx1bO88609 Gm8396-201ENSMUST00000057361 823 ntBASIC13.5□□□□□ -0.25
Lmx1bO88609 Rpl34-ps2-201ENSMUST00000081679 354 ntBASIC13.5□□□□□ -0.25
Lmx1bO88609 Gm10154-201ENSMUST00000084445 354 ntBASIC13.5□□□□□ -0.25
Lmx1bO88609 Olfr520-201ENSMUST00000098264 951 ntAPPRIS P1 BASIC13.5□□□□□ -0.25
Lmx1bO88609 Dock4-201ENSMUST00000037488 8552 ntAPPRIS P2 TSL 1 (best) BASIC13.5□□□□□ -0.25
Lmx1bO88609 Fbxo5-201ENSMUST00000019907 1940 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Lmx1bO88609 Gm16976-201ENSMUST00000099718 1894 ntTSL 5 BASIC13.5□□□□□ -0.25
Lmx1bO88609 Gm45293-201ENSMUST00000209754 1812 ntBASIC13.5□□□□□ -0.25
Lmx1bO88609 Mok-202ENSMUST00000070565 1693 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Lmx1bO88609 Ccdc43-205ENSMUST00000164506 2316 ntAPPRIS ALT1 TSL 5 BASIC13.5□□□□□ -0.25
Lmx1bO88609 Hspa1a-201ENSMUST00000087328 2967 ntAPPRIS P1 BASIC13.5□□□□□ -0.25
Lmx1bO88609 Gpr37l1-201ENSMUST00000027682 2269 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Lmx1bO88609 Ecel1-203ENSMUST00000160810 2898 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Lmx1bO88609 Nov-201ENSMUST00000050027 2869 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Lmx1bO88609 Nfkb1-201ENSMUST00000029812 4117 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Lmx1bO88609 Xpo6-201ENSMUST00000009344 4455 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
Lmx1bO88609 Tmtc2-201ENSMUST00000061506 5629 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Lmx1bO88609 Hip1r-201ENSMUST00000000939 6735 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Retrieved 100 of 76,532 protein–RNA pairs in 29.1 ms