Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Mxra8-201ENSMUST00000030947 2203 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Hmgb3O54879 R3hdm2-212ENSMUST00000166820 4281 ntAPPRIS P2 TSL 5 BASIC12.38□□□□□ -0.43
Hmgb3O54879 Ntng2-210ENSMUST00000177689 1679 ntAPPRIS ALT2 TSL 5 BASIC12.38□□□□□ -0.43
Hmgb3O54879 4933431E20Rik-201ENSMUST00000131345 5407 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Hmgb3O54879 Rspry1-207ENSMUST00000212729 2800 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Hmgb3O54879 Rgs7bp-201ENSMUST00000063551 7077 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Hmgb3O54879 Ncapd3-201ENSMUST00000073127 5499 ntAPPRIS P2 TSL 5 BASIC12.38□□□□□ -0.43
Hmgb3O54879 Adarb1-201ENSMUST00000020496 6549 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Hmgb3O54879 Nexmif-203ENSMUST00000118314 11476 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Hmgb3O54879 Usp19-203ENSMUST00000166103 4473 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Hmgb3O54879 Cxcr3-201ENSMUST00000056614 1731 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Hmgb3O54879 4930481A15Rik-201ENSMUST00000128542 2106 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Hmgb3O54879 Hgfac-201ENSMUST00000030985 2135 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Hmgb3O54879 Rbm33-201ENSMUST00000030920 3955 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Hmgb3O54879 Dhx9-202ENSMUST00000186380 4561 ntAPPRIS P2 TSL 2 BASIC12.37□□□□□ -0.43
Hmgb3O54879 Capn1-201ENSMUST00000025891 3100 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Hmgb3O54879 Ints8-203ENSMUST00000108319 3220 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Hmgb3O54879 Crtc1-201ENSMUST00000076615 5683 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Hmgb3O54879 Grm5-202ENSMUST00000125009 8047 ntAPPRIS P3 TSL 5 BASIC12.37□□□□□ -0.43
Hmgb3O54879 Acot6-202ENSMUST00000222921 3622 ntBASIC12.37□□□□□ -0.43
Hmgb3O54879 Fndc11-202ENSMUST00000108835 1154 ntAPPRIS P1 TSL 2 BASIC12.37□□□□□ -0.43
Hmgb3O54879 Gm16127-201ENSMUST00000131619 234 ntTSL 5 BASIC12.37□□□□□ -0.43
Hmgb3O54879 Hist1h2br-203ENSMUST00000180288 1256 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Hmgb3O54879 Cpne1-217ENSMUST00000184265 871 ntTSL 5 BASIC12.37□□□□□ -0.43
Hmgb3O54879 Arhgef33-211ENSMUST00000225658 473 ntBASIC12.37□□□□□ -0.43
Hmgb3O54879 Cck-201ENSMUST00000035120 691 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Hmgb3O54879 Espn-202ENSMUST00000049305 1142 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Hmgb3O54879 Ly6h-202ENSMUST00000065417 985 ntAPPRIS ALT1 TSL 2 BASIC12.37□□□□□ -0.43
Hmgb3O54879 Hist1h2bq-202ENSMUST00000091749 1254 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Hmgb3O54879 Pkdrej-201ENSMUST00000064370 7058 ntAPPRIS P1 BASIC12.37□□□□□ -0.43
Hmgb3O54879 Cryl1-201ENSMUST00000022517 1497 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Hmgb3O54879 Gm5049-201ENSMUST00000195878 1590 ntBASIC12.37□□□□□ -0.43
Hmgb3O54879 Wdr33-201ENSMUST00000025264 6206 ntAPPRIS P1 TSL 5 BASIC12.37□□□□□ -0.43
Hmgb3O54879 Grk6-207ENSMUST00000225925 2769 ntBASIC12.37□□□□□ -0.43
Hmgb3O54879 Fam228b-201ENSMUST00000053458 2851 ntAPPRIS P2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Hmgb3O54879 Rassf10-201ENSMUST00000182858 3496 ntAPPRIS P1 BASIC12.37□□□□□ -0.43
Hmgb3O54879 Abtb2-201ENSMUST00000076212 4558 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Hmgb3O54879 Wisp1-201ENSMUST00000005255 5097 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Hmgb3O54879 Zfp346-201ENSMUST00000021937 3333 ntAPPRIS P2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Hmgb3O54879 St6gal2-202ENSMUST00000086878 2606 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Hmgb3O54879 Myo7a-203ENSMUST00000107127 6806 ntAPPRIS P3 TSL 5 BASIC12.37□□□□□ -0.43
Hmgb3O54879 Ankrd34b-203ENSMUST00000168871 3397 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Hmgb3O54879 Zfp467-205ENSMUST00000114560 3266 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Hmgb3O54879 Sh2b1-205ENSMUST00000205733 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
Hmgb3O54879 Ercc2-203ENSMUST00000108461 2799 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Hmgb3O54879 Fbxo46-202ENSMUST00000165913 2498 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Hmgb3O54879 Kcnip4-201ENSMUST00000087395 2366 ntTSL 5 BASIC12.36□□□□□ -0.43
Hmgb3O54879 Ankrd23-202ENSMUST00000193083 2277 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Hmgb3O54879 Wwp2-205ENSMUST00000212543 1996 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Hmgb3O54879 Diaph1-204ENSMUST00000115631 5741 ntAPPRIS ALT2 TSL 5 BASIC12.36□□□□□ -0.43
Hmgb3O54879 Prkcz2-201ENSMUST00000206136 1756 ntBASIC12.36□□□□□ -0.43
Hmgb3O54879 Ttyh2-201ENSMUST00000045779 3486 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Hmgb3O54879 Gm26781-201ENSMUST00000181385 1477 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Hmgb3O54879 Pth2r-201ENSMUST00000027083 2414 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Hmgb3O54879 Sp3os-201ENSMUST00000123087 583 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Hmgb3O54879 Cux2-210ENSMUST00000168288 4697 ntAPPRIS P1 TSL 5 BASIC12.36□□□□□ -0.43
Hmgb3O54879 Syngr2-206ENSMUST00000177131 935 ntAPPRIS ALT2 TSL 3 BASIC12.36□□□□□ -0.43
Hmgb3O54879 Mir6404-201ENSMUST00000183699 94 ntBASIC12.36□□□□□ -0.43
Hmgb3O54879 Mir1668-201ENSMUST00000184114 107 ntBASIC12.36□□□□□ -0.43
Hmgb3O54879 Gm45709-201ENSMUST00000213052 1075 ntTSL 5 BASIC12.36□□□□□ -0.43
Hmgb3O54879 Ano7-201ENSMUST00000058682 2963 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
Hmgb3O54879 Ddx49-201ENSMUST00000008004 2137 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Hmgb3O54879 Card9-202ENSMUST00000100303 1947 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Hmgb3O54879 Ebag9-202ENSMUST00000226165 1931 ntAPPRIS P1 BASIC12.36□□□□□ -0.43
Hmgb3O54879 Eftud2-202ENSMUST00000107060 3339 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Hmgb3O54879 Pcdh7-202ENSMUST00000094783 3752 ntAPPRIS ALT1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Hmgb3O54879 Layn-204ENSMUST00000217212 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
Hmgb3O54879 Ube2g1-203ENSMUST00000138247 3931 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Hmgb3O54879 Slc33a1-202ENSMUST00000160883 1978 ntAPPRIS P1 TSL 5 BASIC12.36□□□□□ -0.43
Hmgb3O54879 Osbpl8-201ENSMUST00000095310 3622 ntAPPRIS P3 TSL 1 (best) BASIC12.36□□□□□ -0.43
Hmgb3O54879 Sphk1-204ENSMUST00000106386 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
Hmgb3O54879 Tap2-201ENSMUST00000025197 3442 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Hmgb3O54879 E230016M11Rik-201ENSMUST00000130657 1764 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Hmgb3O54879 Coasy-201ENSMUST00000001806 2138 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Hmgb3O54879 Ece2-204ENSMUST00000133344 3042 ntAPPRIS ALT1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Hmgb3O54879 Fbxl12-205ENSMUST00000140702 1555 ntBASIC12.35□□□□□ -0.43
Hmgb3O54879 Aqp5-202ENSMUST00000169082 1551 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Hmgb3O54879 Stard6-201ENSMUST00000114959 1496 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Hmgb3O54879 Mrpl37-201ENSMUST00000030365 1498 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Hmgb3O54879 Lap3-201ENSMUST00000046122 2267 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Hmgb3O54879 Pelp1-201ENSMUST00000019065 3435 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Hmgb3O54879 Rab34-201ENSMUST00000002128 1368 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Hmgb3O54879 Npb-202ENSMUST00000106194 530 ntAPPRIS ALT2 TSL 2 BASIC12.35□□□□□ -0.43
Hmgb3O54879 Npb-203ENSMUST00000106195 542 ntAPPRIS P3 TSL 1 (best) BASIC12.35□□□□□ -0.43
Hmgb3O54879 Stmn4-202ENSMUST00000118426 1281 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Hmgb3O54879 Asnsd1-202ENSMUST00000123519 983 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Hmgb3O54879 2210408F21Rik-211ENSMUST00000151800 750 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Hmgb3O54879 Pomc-204ENSMUST00000219543 1043 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Hmgb3O54879 CT025689.6-201ENSMUST00000224991 1104 ntBASIC12.35□□□□□ -0.43
Hmgb3O54879 Krtcap3-201ENSMUST00000054829 904 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Hmgb3O54879 Fgfr1op2-202ENSMUST00000058245 918 ntTSL 2 BASIC12.35□□□□□ -0.43
Hmgb3O54879 Tmem128-201ENSMUST00000087511 1291 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Hmgb3O54879 Plekhn1-201ENSMUST00000105569 3014 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Hmgb3O54879 Myo19-202ENSMUST00000093969 4091 ntAPPRIS P1 TSL 5 BASIC12.35□□□□□ -0.43
Hmgb3O54879 Rom1-201ENSMUST00000096242 1526 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Hmgb3O54879 Chuk-201ENSMUST00000026217 3502 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Hmgb3O54879 Dnmt1-207ENSMUST00000216540 5543 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
Hmgb3O54879 Fam169b-206ENSMUST00000210558 2815 ntAPPRIS ALT2 TSL 5 BASIC12.35□□□□□ -0.43
Hmgb3O54879 Orai3-203ENSMUST00000121504 2141 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Hmgb3O54879 Cad-201ENSMUST00000013773 7137 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Retrieved 100 of 76,532 protein–RNA pairs in 71.2 ms