Protein–RNA interactions for Protein: O35627

Nr1i3, Nuclear receptor subfamily 1 group I member 3, mousemouse

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nr1i3O35627 Tmem184a-201ENSMUST00000044002 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Nr1i3O35627 Npas3-204ENSMUST00000223358 3143 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Nr1i3O35627 Gemin5-202ENSMUST00000102711 4919 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
Nr1i3O35627 H2-Bl-201ENSMUST00000173080 1138 ntAPPRIS P5 TSL 1 (best) BASIC16.03■□□□□ 0.16
Nr1i3O35627 Flg-204ENSMUST00000178752 756 ntAPPRIS ALT2 BASIC16.03■□□□□ 0.16
Nr1i3O35627 H2-Bl-204ENSMUST00000184502 862 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Nr1i3O35627 Tmem270-202ENSMUST00000201316 847 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Nr1i3O35627 Vkorc1-201ENSMUST00000033074 748 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Nr1i3O35627 Mapk8ip3-203ENSMUST00000115229 5603 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
Nr1i3O35627 2310011J03Rik-201ENSMUST00000020341 1649 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Nr1i3O35627 Zfp57-202ENSMUST00000089968 1991 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Nr1i3O35627 Brix1-201ENSMUST00000022855 2664 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Nr1i3O35627 Kcnt1-213ENSMUST00000198204 4714 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
Nr1i3O35627 Gm44981-201ENSMUST00000205549 1943 ntBASIC16.03■□□□□ 0.16
Nr1i3O35627 Ints8-203ENSMUST00000108319 3220 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Nr1i3O35627 Cnih1-201ENSMUST00000015903 1538 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Nr1i3O35627 Atf7-202ENSMUST00000108828 2887 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Nr1i3O35627 Rbm26-203ENSMUST00000163499 4212 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Nr1i3O35627 Clec2h-201ENSMUST00000032518 2160 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Nr1i3O35627 Nkapl-201ENSMUST00000068235 1463 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
Nr1i3O35627 Slc46a3-201ENSMUST00000031655 2434 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Nr1i3O35627 Capn12-201ENSMUST00000066880 3040 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
Nr1i3O35627 Ambra1-205ENSMUST00000111317 4929 ntTSL 5 BASIC16.02■□□□□ 0.16
Nr1i3O35627 Ube2o-201ENSMUST00000082152 5205 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Nr1i3O35627 Fem1b-201ENSMUST00000034775 6785 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Nr1i3O35627 Dnajc7-201ENSMUST00000014339 2330 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Nr1i3O35627 Rnf38-202ENSMUST00000098098 5061 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
Nr1i3O35627 Gm43205-201ENSMUST00000198622 1968 ntBASIC16.02■□□□□ 0.16
Nr1i3O35627 Rhpn1-201ENSMUST00000023244 1932 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
Nr1i3O35627 Gm13294-201ENSMUST00000121757 1330 ntBASIC16.02■□□□□ 0.16
Nr1i3O35627 Ifrd1-201ENSMUST00000001672 3378 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Nr1i3O35627 Tsc22d2-201ENSMUST00000099090 9799 ntAPPRIS P3 TSL 3 BASIC16.02■□□□□ 0.16
Nr1i3O35627 Cbs-201ENSMUST00000067801 2497 ntAPPRIS P4 TSL 1 (best) BASIC16.02■□□□□ 0.16
Nr1i3O35627 Gm5096-201ENSMUST00000091776 1858 ntAPPRIS P1 BASIC16.02■□□□□ 0.16
Nr1i3O35627 Runx2-203ENSMUST00000113572 6463 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
Nr1i3O35627 Pcolce2-201ENSMUST00000015498 4438 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Nr1i3O35627 Bex1-203ENSMUST00000113120 718 ntAPPRIS P1 TSL 3 BASIC16.02■□□□□ 0.16
Nr1i3O35627 Gm15173-201ENSMUST00000122049 433 ntBASIC16.02■□□□□ 0.16
Nr1i3O35627 Znhit1-206ENSMUST00000156963 1208 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
Nr1i3O35627 Gm4899-201ENSMUST00000178708 719 ntBASIC16.02■□□□□ 0.16
Nr1i3O35627 Urah-204ENSMUST00000185612 716 ntAPPRIS P3 TSL 3 BASIC16.02■□□□□ 0.16
Nr1i3O35627 Gm10419-203ENSMUST00000197854 653 ntTSL 5 BASIC16.02■□□□□ 0.16
Nr1i3O35627 Krtcap3-208ENSMUST00000201937 889 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
Nr1i3O35627 Gm43935-201ENSMUST00000203569 1050 ntBASIC16.02■□□□□ 0.16
Nr1i3O35627 Urah-207ENSMUST00000211372 688 ntAPPRIS P3 TSL 2 BASIC16.02■□□□□ 0.16
Nr1i3O35627 AV026068-213ENSMUST00000223675 1171 ntBASIC16.02■□□□□ 0.16
Nr1i3O35627 Sod1-201ENSMUST00000023707 646 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Nr1i3O35627 Urah-201ENSMUST00000026554 890 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
Nr1i3O35627 Mtus2-201ENSMUST00000071878 1211 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
Nr1i3O35627 Synj2-210ENSMUST00000115791 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
Nr1i3O35627 Gm4756-202ENSMUST00000208039 2344 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.15
Nr1i3O35627 Igdcc4-202ENSMUST00000077696 6361 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.15
Nr1i3O35627 Gtf2b-201ENSMUST00000029938 1455 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
Nr1i3O35627 Dcaf17-202ENSMUST00000102701 1703 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
Nr1i3O35627 Coro6-201ENSMUST00000021190 1418 ntAPPRIS P5 TSL 1 (best) BASIC16.02■□□□□ 0.15
Nr1i3O35627 Snx8-205ENSMUST00000196566 1914 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.15
Nr1i3O35627 Fhdc1-205ENSMUST00000194027 1648 ntTSL 5 BASIC16.01■□□□□ 0.15
Nr1i3O35627 Nap1l1-206ENSMUST00000219143 1365 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
Nr1i3O35627 Appbp2-201ENSMUST00000018625 6463 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Nr1i3O35627 Ly9-201ENSMUST00000004827 2098 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
Nr1i3O35627 Map6d1-201ENSMUST00000040880 3273 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Nr1i3O35627 Ercc2-203ENSMUST00000108461 2799 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
Nr1i3O35627 Arfip1-203ENSMUST00000143514 1343 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
Nr1i3O35627 Gm10676-201ENSMUST00000098778 3221 ntBASIC16.01■□□□□ 0.15
Nr1i3O35627 Fars2-208ENSMUST00000224611 1750 ntAPPRIS P1 BASIC16.01■□□□□ 0.15
Nr1i3O35627 Sorbs3-204ENSMUST00000227929 2460 ntBASIC16.01■□□□□ 0.15
Nr1i3O35627 Zmym3-204ENSMUST00000118092 1502 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
Nr1i3O35627 Slc31a2-203ENSMUST00000107468 743 ntAPPRIS ALT1 TSL 5 BASIC16.01■□□□□ 0.15
Nr1i3O35627 0610025J13Rik-201ENSMUST00000131324 652 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
Nr1i3O35627 Gm15635-203ENSMUST00000148972 554 ntTSL 2 BASIC16.01■□□□□ 0.15
Nr1i3O35627 Nat8b-ps-201ENSMUST00000162660 699 ntBASIC16.01■□□□□ 0.15
Nr1i3O35627 Smarca5-ps-202ENSMUST00000171805 1284 ntBASIC16.01■□□□□ 0.15
Nr1i3O35627 Slc38a7-201ENSMUST00000040481 3333 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Nr1i3O35627 Pdia2-202ENSMUST00000120333 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
Nr1i3O35627 Dbndd1-201ENSMUST00000176155 1677 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Nr1i3O35627 Atg9a-208ENSMUST00000189702 4110 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
Nr1i3O35627 Phactr2-203ENSMUST00000105545 8556 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
Nr1i3O35627 2410002F23Rik-218ENSMUST00000188382 2301 ntAPPRIS P2 TSL 5 BASIC16.01■□□□□ 0.15
Nr1i3O35627 Usp35-201ENSMUST00000139582 4262 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
Nr1i3O35627 Lrp11-201ENSMUST00000019931 3386 ntAPPRIS P2 TSL 1 (best) BASIC16.01■□□□□ 0.15
Nr1i3O35627 Epha1-203ENSMUST00000204357 2948 ntTSL 5 BASIC16.01■□□□□ 0.15
Nr1i3O35627 Idh3b-201ENSMUST00000028892 1616 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Nr1i3O35627 Edn3-201ENSMUST00000029030 3117 ntAPPRIS P2 TSL 1 (best) BASIC16.01■□□□□ 0.15
Nr1i3O35627 Csdc2-201ENSMUST00000038757 2490 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Nr1i3O35627 Psmd5-201ENSMUST00000028225 4397 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Nr1i3O35627 Tpm3-201ENSMUST00000029549 2230 ntTSL 1 (best) BASIC16■□□□□ 0.15
Nr1i3O35627 Slc39a4-201ENSMUST00000073428 2224 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Nr1i3O35627 Zpbp2-204ENSMUST00000107511 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
Nr1i3O35627 Garem2-201ENSMUST00000058045 3865 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
Nr1i3O35627 AC025913.2-201ENSMUST00000220136 1766 ntBASIC16■□□□□ 0.15
Nr1i3O35627 Eif4g1-201ENSMUST00000044783 5444 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
Nr1i3O35627 Mterf4-202ENSMUST00000112942 1525 ntTSL 2 BASIC16■□□□□ 0.15
Nr1i3O35627 Gm26882-201ENSMUST00000181611 1537 ntTSL 5 BASIC16■□□□□ 0.15
Nr1i3O35627 Srgn-204ENSMUST00000160987 1727 ntAPPRIS P1 TSL 3 BASIC16■□□□□ 0.15
Nr1i3O35627 Ahcy-201ENSMUST00000054607 2543 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Nr1i3O35627 Adcy3-204ENSMUST00000127756 4672 ntAPPRIS P3 TSL 5 BASIC16■□□□□ 0.15
Nr1i3O35627 Ppp2r2c-201ENSMUST00000031003 4088 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Nr1i3O35627 AI849053-201ENSMUST00000181021 2658 ntTSL 3 BASIC16■□□□□ 0.15
Nr1i3O35627 Iqce-202ENSMUST00000077890 2494 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
Nr1i3O35627 Rxrb-202ENSMUST00000116612 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
Retrieved 100 of 76,532 protein–RNA pairs in 32.4 ms