Protein–RNA interactions for Protein: Q9R060

Nubp1, Cytosolic Fe-S cluster assembly factor NUBP1, mousemouse

Predictions only

Length 320 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nubp1Q9R060 Rsbn1-202ENSMUST00000068879 6712 ntAPPRIS P2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Nubp1Q9R060 Klhl33-202ENSMUST00000170855 1422 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Nubp1Q9R060 Prkag1-201ENSMUST00000168846 1638 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Nubp1Q9R060 Gm26669-201ENSMUST00000181323 1808 ntTSL 5 BASIC13.2□□□□□ -0.3
Nubp1Q9R060 Mapk14-204ENSMUST00000114754 3592 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Nubp1Q9R060 Cidec-202ENSMUST00000113089 1720 ntAPPRIS P2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Nubp1Q9R060 Klc1-202ENSMUST00000118471 2272 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Nubp1Q9R060 Tmem150b-202ENSMUST00000086364 2822 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Nubp1Q9R060 Efcab14-202ENSMUST00000106522 2636 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Nubp1Q9R060 Gramd3-201ENSMUST00000070166 2605 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Nubp1Q9R060 Zfp648-201ENSMUST00000086195 1892 ntAPPRIS P1 TSL 3 BASIC13.19□□□□□ -0.3
Nubp1Q9R060 Cd82-205ENSMUST00000116457 1683 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Nubp1Q9R060 Myog-201ENSMUST00000027730 1495 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Nubp1Q9R060 Hnrnpll-201ENSMUST00000061331 3116 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
Nubp1Q9R060 Ctnna2-205ENSMUST00000161846 4018 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Nubp1Q9R060 Pip4k2a-201ENSMUST00000006912 3477 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Nubp1Q9R060 Shank3-201ENSMUST00000039074 7131 ntAPPRIS P2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Nubp1Q9R060 Mrps27-201ENSMUST00000052249 1849 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Nubp1Q9R060 Ninj2-202ENSMUST00000112711 853 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
Nubp1Q9R060 Gm11773-201ENSMUST00000138256 497 ntTSL 2 BASIC13.19□□□□□ -0.3
Nubp1Q9R060 Crem-221ENSMUST00000142690 1256 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Nubp1Q9R060 Gm16137-201ENSMUST00000161571 664 ntTSL 5 BASIC13.19□□□□□ -0.3
Nubp1Q9R060 Gm18246-201ENSMUST00000221023 728 ntBASIC13.19□□□□□ -0.3
Nubp1Q9R060 Tbl1x-201ENSMUST00000088217 5234 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Nubp1Q9R060 Naa35-201ENSMUST00000022038 3793 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Nubp1Q9R060 Usp27x-201ENSMUST00000115744 3240 ntAPPRIS P1 BASIC13.19□□□□□ -0.3
Nubp1Q9R060 Crhbp-202ENSMUST00000221025 1779 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Nubp1Q9R060 Krt83-201ENSMUST00000023718 1756 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Nubp1Q9R060 Zfp334-201ENSMUST00000103084 8205 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Nubp1Q9R060 Sf1-202ENSMUST00000113487 2649 ntAPPRIS ALT1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Nubp1Q9R060 Tmod2-207ENSMUST00000215462 1564 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Nubp1Q9R060 Adarb1-202ENSMUST00000098374 6584 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Nubp1Q9R060 Ggn-204ENSMUST00000208330 2205 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
Nubp1Q9R060 Gm6583-201ENSMUST00000051117 2233 ntAPPRIS P1 BASIC13.19□□□□□ -0.3
Nubp1Q9R060 Pald1-201ENSMUST00000020289 4282 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Nubp1Q9R060 Ccdc84-202ENSMUST00000213813 2675 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Nubp1Q9R060 Cacna2d2-202ENSMUST00000085092 5183 ntAPPRIS P4 TSL 5 BASIC13.18□□□□□ -0.3
Nubp1Q9R060 Spdef-201ENSMUST00000025054 1824 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Nubp1Q9R060 Faf1-201ENSMUST00000102724 4468 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Nubp1Q9R060 Zeb2os-201ENSMUST00000127150 1305 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Nubp1Q9R060 Grhl2-203ENSMUST00000161405 1996 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Nubp1Q9R060 Fam133b-201ENSMUST00000115527 1491 ntAPPRIS P2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Nubp1Q9R060 Atp6v0d1-201ENSMUST00000013304 1629 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Nubp1Q9R060 Chgb-201ENSMUST00000028826 2740 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Nubp1Q9R060 Crtc3-201ENSMUST00000122255 5115 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Nubp1Q9R060 Txnrd2-215ENSMUST00000206151 2874 ntAPPRIS P2 TSL 5 BASIC13.18□□□□□ -0.3
Nubp1Q9R060 Dnajc8-206ENSMUST00000105940 772 ntTSL 5 BASIC13.18□□□□□ -0.3
Nubp1Q9R060 Nudt1-204ENSMUST00000110826 606 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Nubp1Q9R060 Gm3054-201ENSMUST00000111075 265 ntTSL 5 BASIC13.18□□□□□ -0.3
Nubp1Q9R060 Cryba4-202ENSMUST00000112383 754 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Nubp1Q9R060 1700021F05Rik-202ENSMUST00000147196 860 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Nubp1Q9R060 9430065F17Rik-202ENSMUST00000180908 1084 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Nubp1Q9R060 5430405H02Rik-203ENSMUST00000185402 904 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Nubp1Q9R060 Gm15406-202ENSMUST00000202229 767 ntTSL 2 BASIC13.18□□□□□ -0.3
Nubp1Q9R060 Gm45071-201ENSMUST00000205353 571 ntBASIC13.18□□□□□ -0.3
Nubp1Q9R060 Gm8679-201ENSMUST00000210651 1036 ntBASIC13.18□□□□□ -0.3
Nubp1Q9R060 Apobec2-201ENSMUST00000046549 1218 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Nubp1Q9R060 Lamtor4-201ENSMUST00000062067 877 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Nubp1Q9R060 Ccdc54-201ENSMUST00000062439 1296 ntAPPRIS P1 BASIC13.18□□□□□ -0.3
Nubp1Q9R060 2810408A11Rik-202ENSMUST00000100969 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Nubp1Q9R060 Lrrc32-203ENSMUST00000205956 4576 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
Nubp1Q9R060 Ube2r2-201ENSMUST00000040008 3600 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Nubp1Q9R060 Kat5-201ENSMUST00000113641 2008 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Nubp1Q9R060 Krcc1-201ENSMUST00000080949 1393 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Nubp1Q9R060 Fam217a-204ENSMUST00000225242 1811 ntAPPRIS ALT2 BASIC13.18□□□□□ -0.3
Nubp1Q9R060 Ankrd23-201ENSMUST00000054665 1964 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Nubp1Q9R060 Yipf4-201ENSMUST00000024873 2133 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Nubp1Q9R060 Nfix-203ENSMUST00000109762 2261 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Nubp1Q9R060 Rasgrp2-208ENSMUST00000113476 2296 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
Nubp1Q9R060 Cask-204ENSMUST00000115438 8366 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Nubp1Q9R060 Specc1-210ENSMUST00000201723 2690 ntTSL 5 BASIC13.17□□□□□ -0.3
Nubp1Q9R060 Zdhhc1-203ENSMUST00000212303 2056 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Nubp1Q9R060 Irf7-202ENSMUST00000097952 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Nubp1Q9R060 Trappc10-201ENSMUST00000000384 5047 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Nubp1Q9R060 Gjb3-202ENSMUST00000106091 1623 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Nubp1Q9R060 CT030159.3-201ENSMUST00000222936 1481 ntTSL 5 BASIC13.17□□□□□ -0.3
Nubp1Q9R060 A230087F16Rik-202ENSMUST00000181561 1303 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Nubp1Q9R060 Sh3bgr-201ENSMUST00000048770 1321 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Nubp1Q9R060 Col16a1-201ENSMUST00000044565 5206 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Nubp1Q9R060 Brap-201ENSMUST00000031414 3744 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Nubp1Q9R060 Gm12467-201ENSMUST00000117625 745 ntBASIC13.17□□□□□ -0.3
Nubp1Q9R060 Gm13453-201ENSMUST00000118708 357 ntBASIC13.17□□□□□ -0.3
Nubp1Q9R060 Gm12249-201ENSMUST00000132323 719 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Nubp1Q9R060 1700060J05Rik-201ENSMUST00000138377 1060 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Nubp1Q9R060 Umad1-206ENSMUST00000160705 624 ntAPPRIS P4 TSL 2 BASIC13.17□□□□□ -0.3
Nubp1Q9R060 Tm7sf2-209ENSMUST00000161528 732 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Nubp1Q9R060 Lsamp-207ENSMUST00000189229 637 ntTSL 3 BASIC13.17□□□□□ -0.3
Nubp1Q9R060 Gm29202-201ENSMUST00000191263 422 ntTSL 5 BASIC13.17□□□□□ -0.3
Nubp1Q9R060 Gm28877-201ENSMUST00000191349 604 ntBASIC13.17□□□□□ -0.3
Nubp1Q9R060 Lsamp-210ENSMUST00000191610 1297 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Nubp1Q9R060 Gm6649-201ENSMUST00000199743 1165 ntBASIC13.17□□□□□ -0.3
Nubp1Q9R060 2900064F13Rik-201ENSMUST00000202166 1008 ntBASIC13.17□□□□□ -0.3
Nubp1Q9R060 Tspan32-211ENSMUST00000207211 1220 ntTSL 5 BASIC13.17□□□□□ -0.3
Nubp1Q9R060 AC122024.2-201ENSMUST00000220086 871 ntBASIC13.17□□□□□ -0.3
Nubp1Q9R060 Trappc4-201ENSMUST00000034623 1220 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Nubp1Q9R060 Hesx1-201ENSMUST00000035433 1141 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Nubp1Q9R060 Reep6-201ENSMUST00000040081 850 ntTSL 5 BASIC13.17□□□□□ -0.3
Nubp1Q9R060 Rps27l-201ENSMUST00000040917 499 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Nubp1Q9R060 Kitl-202ENSMUST00000105283 5648 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Nubp1Q9R060 Nipal2-201ENSMUST00000040791 4331 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Retrieved 100 of 76,532 protein–RNA pairs in 23.6 ms