Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Gm15406-202ENSMUST00000202229 767 ntTSL 2 BASIC18.03■□□□□ 0.48
Brf1Q8CFK2 Tpd52l1-202ENSMUST00000213528 969 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
Brf1Q8CFK2 Nxnl2-201ENSMUST00000021828 1167 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Brf1Q8CFK2 Zfyve21-206ENSMUST00000222843 705 ntTSL 3 BASIC18.03■□□□□ 0.48
Brf1Q8CFK2 Pik3ip1-202ENSMUST00000093399 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
Brf1Q8CFK2 St3gal3-202ENSMUST00000097912 2143 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Brf1Q8CFK2 Spock1-203ENSMUST00000185905 2794 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Brf1Q8CFK2 Zfp879-203ENSMUST00000109134 2414 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
Brf1Q8CFK2 Zfp879-201ENSMUST00000049625 2408 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Brf1Q8CFK2 Spdef-202ENSMUST00000114870 2070 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
Brf1Q8CFK2 Kcnt1-213ENSMUST00000198204 4714 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
Brf1Q8CFK2 Otub1-201ENSMUST00000025679 1713 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Brf1Q8CFK2 Smyd4-201ENSMUST00000044530 3517 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Brf1Q8CFK2 Rnaseh2a-203ENSMUST00000109738 2044 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Brf1Q8CFK2 Galnt13-203ENSMUST00000112635 7531 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Brf1Q8CFK2 Fstl1-201ENSMUST00000114763 3789 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Brf1Q8CFK2 St7l-211ENSMUST00000200132 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
Brf1Q8CFK2 Actg1-204ENSMUST00000106215 1827 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Brf1Q8CFK2 Sp2-203ENSMUST00000107624 3055 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.48
Brf1Q8CFK2 Zfp868-202ENSMUST00000121886 2259 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Brf1Q8CFK2 Gm37728-201ENSMUST00000195025 2292 ntBASIC18.02■□□□□ 0.48
Brf1Q8CFK2 Flywch1-202ENSMUST00000086325 2443 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Brf1Q8CFK2 Rad18-201ENSMUST00000068487 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
Brf1Q8CFK2 Gm11127-201ENSMUST00000113742 1344 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Brf1Q8CFK2 Gm11611-201ENSMUST00000134289 1326 ntTSL 3 BASIC18.02■□□□□ 0.48
Brf1Q8CFK2 Zbtb14-201ENSMUST00000062369 3625 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Brf1Q8CFK2 Lrriq4-202ENSMUST00000108267 2387 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
Brf1Q8CFK2 Pou2f3-202ENSMUST00000176636 2522 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.48
Brf1Q8CFK2 Clcn2-201ENSMUST00000007207 3128 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.48
Brf1Q8CFK2 Fbxl19-201ENSMUST00000033081 3410 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.48
Brf1Q8CFK2 Bad-203ENSMUST00000113426 740 ntTSL 5 BASIC18.02■□□□□ 0.48
Brf1Q8CFK2 Rpl34-ps1-201ENSMUST00000121998 354 ntBASIC18.02■□□□□ 0.48
Brf1Q8CFK2 Pcp2-204ENSMUST00000136105 504 ntAPPRIS P4 TSL 1 (best) BASIC18.02■□□□□ 0.48
Brf1Q8CFK2 Cystm1-205ENSMUST00000152804 445 ntAPPRIS P2 TSL 3 BASIC18.02■□□□□ 0.48
Brf1Q8CFK2 Gm26756-201ENSMUST00000181689 1294 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Brf1Q8CFK2 Gm2272-201ENSMUST00000194903 582 ntBASIC18.02■□□□□ 0.48
Brf1Q8CFK2 Gm42802-201ENSMUST00000202475 456 ntTSL 2 BASIC18.02■□□□□ 0.48
Brf1Q8CFK2 Gm43332-201ENSMUST00000202511 1044 ntBASIC18.02■□□□□ 0.48
Brf1Q8CFK2 AC154572.2-201ENSMUST00000225105 997 ntBASIC18.02■□□□□ 0.48
Brf1Q8CFK2 Asic1-201ENSMUST00000023758 4114 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Brf1Q8CFK2 Mrps36-202ENSMUST00000078573 571 ntAPPRIS ALT1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Brf1Q8CFK2 Rpl34-ps2-201ENSMUST00000081679 354 ntBASIC18.02■□□□□ 0.48
Brf1Q8CFK2 Gm10154-201ENSMUST00000084445 354 ntBASIC18.02■□□□□ 0.48
Brf1Q8CFK2 Tmem87b-201ENSMUST00000110325 4807 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Brf1Q8CFK2 Sidt2-201ENSMUST00000038488 4248 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Brf1Q8CFK2 Dlgap1-207ENSMUST00000133983 7173 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.47
Brf1Q8CFK2 Gm37305-201ENSMUST00000195714 4279 ntBASIC18.02■□□□□ 0.47
Brf1Q8CFK2 Nkd2-202ENSMUST00000118096 2801 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.47
Brf1Q8CFK2 Kcnn1-208ENSMUST00000212611 2528 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.47
Brf1Q8CFK2 Nup54-201ENSMUST00000038514 2352 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Brf1Q8CFK2 Lman2l-204ENSMUST00000125304 3378 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Brf1Q8CFK2 Rbm22-201ENSMUST00000025506 2210 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Brf1Q8CFK2 4930438A08Rik-201ENSMUST00000108834 2093 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.47
Brf1Q8CFK2 Ybx1-201ENSMUST00000079644 1628 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Brf1Q8CFK2 Cttn-202ENSMUST00000103079 3286 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
Brf1Q8CFK2 Sybu-202ENSMUST00000110267 3127 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
Brf1Q8CFK2 Brd3-203ENSMUST00000113941 5289 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
Brf1Q8CFK2 Nrros-201ENSMUST00000099991 2548 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
Brf1Q8CFK2 Eif5-201ENSMUST00000050993 1969 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
Brf1Q8CFK2 Tubgcp4-215ENSMUST00000186659 2915 ntAPPRIS ALT1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Brf1Q8CFK2 C920006O11Rik-201ENSMUST00000180974 1444 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Brf1Q8CFK2 Gm21586-201ENSMUST00000107988 264 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Brf1Q8CFK2 Gm21953-201ENSMUST00000108002 264 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
Brf1Q8CFK2 Nudt1-204ENSMUST00000110826 606 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Brf1Q8CFK2 Znhit1-204ENSMUST00000111091 1070 ntTSL 5 BASIC18.01■□□□□ 0.47
Brf1Q8CFK2 Gm9385-201ENSMUST00000117563 472 ntBASIC18.01■□□□□ 0.47
Brf1Q8CFK2 Izumo1r-203ENSMUST00000117620 1095 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Brf1Q8CFK2 Slc7a10-203ENSMUST00000135452 629 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Brf1Q8CFK2 Rpl26-206ENSMUST00000167436 606 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
Brf1Q8CFK2 Olfr1344-201ENSMUST00000168341 1061 ntAPPRIS P1 BASIC18.01■□□□□ 0.47
Brf1Q8CFK2 Mir3113-201ENSMUST00000175478 76 ntBASIC18.01■□□□□ 0.47
Brf1Q8CFK2 1600014C10Rik-207ENSMUST00000179503 784 ntTSL 5 BASIC18.01■□□□□ 0.47
Brf1Q8CFK2 Gm20878-208ENSMUST00000181518 264 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
Brf1Q8CFK2 Gm27301-201ENSMUST00000184012 127 ntBASIC18.01■□□□□ 0.47
Brf1Q8CFK2 A430093F15Rik-205ENSMUST00000188480 509 ntTSL 3 BASIC18.01■□□□□ 0.47
Brf1Q8CFK2 Gm29202-201ENSMUST00000191263 422 ntTSL 5 BASIC18.01■□□□□ 0.47
Brf1Q8CFK2 Ogfod2-207ENSMUST00000196627 532 ntTSL 3 BASIC18.01■□□□□ 0.47
Brf1Q8CFK2 Vmn2r-ps89-201ENSMUST00000209195 1010 ntBASIC18.01■□□□□ 0.47
Brf1Q8CFK2 Treml1-204ENSMUST00000224001 1220 ntAPPRIS P2 BASIC18.01■□□□□ 0.47
Brf1Q8CFK2 Ano8-201ENSMUST00000093450 3653 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
Brf1Q8CFK2 Pcolce-201ENSMUST00000031731 1626 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
Brf1Q8CFK2 Sbf2-213ENSMUST00000171218 1476 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Brf1Q8CFK2 Rcn3-201ENSMUST00000019683 1462 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Brf1Q8CFK2 Rcn3-208ENSMUST00000211352 1453 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Brf1Q8CFK2 Aifm1-202ENSMUST00000114945 2221 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
Brf1Q8CFK2 Gatsl3-201ENSMUST00000020699 1574 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Brf1Q8CFK2 Atg9a-208ENSMUST00000189702 4110 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
Brf1Q8CFK2 Nipal2-201ENSMUST00000040791 4331 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Brf1Q8CFK2 Gm11906-201ENSMUST00000124792 680 ntTSL 5 BASIC18■□□□□ 0.47
Brf1Q8CFK2 Dbi-207ENSMUST00000151708 491 ntTSL 1 (best) BASIC18■□□□□ 0.47
Brf1Q8CFK2 Gm26769-201ENSMUST00000180469 619 ntTSL 3 BASIC18■□□□□ 0.47
Brf1Q8CFK2 Gm27244-201ENSMUST00000184260 380 ntTSL 5 BASIC18■□□□□ 0.47
Brf1Q8CFK2 Gm5264-201ENSMUST00000190584 848 ntBASIC18■□□□□ 0.47
Brf1Q8CFK2 Gm29520-201ENSMUST00000191209 1067 ntTSL 5 BASIC18■□□□□ 0.47
Brf1Q8CFK2 2010107E04Rik-203ENSMUST00000222874 612 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
Brf1Q8CFK2 Bloc1s5-203ENSMUST00000224902 612 ntBASIC18■□□□□ 0.47
Brf1Q8CFK2 Neurl2-201ENSMUST00000042775 1014 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Brf1Q8CFK2 Gm10605-202ENSMUST00000183019 3198 ntBASIC18■□□□□ 0.47
Brf1Q8CFK2 Syp-201ENSMUST00000069520 2591 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Brf1Q8CFK2 Akirin2-201ENSMUST00000084299 1397 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Retrieved 100 of 76,532 protein–RNA pairs in 28 ms