Protein–RNA interactions for Protein: Q8CDG3

Vcpip1, Deubiquitinating protein VCIP135, mousemouse

Predictions only

Length 1,220 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vcpip1Q8CDG3 Eif5a-207ENSMUST00000108610 1409 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Vcpip1Q8CDG3 4933434E20Rik-203ENSMUST00000068798 1500 ntTSL 5 BASIC16.09■□□□□ 0.17
Vcpip1Q8CDG3 Prrg4-201ENSMUST00000028593 2872 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Vcpip1Q8CDG3 Ccdc103-201ENSMUST00000021307 1841 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
Vcpip1Q8CDG3 Zfyve27-201ENSMUST00000099443 2573 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.17
Vcpip1Q8CDG3 Fam161a-205ENSMUST00000172602 1935 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
Vcpip1Q8CDG3 Nes-203ENSMUST00000160694 5958 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
Vcpip1Q8CDG3 Mfsd6l-201ENSMUST00000053211 2060 ntAPPRIS P1 BASIC16.08■□□□□ 0.16
Vcpip1Q8CDG3 Frs3os-201ENSMUST00000136531 978 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Vcpip1Q8CDG3 Abhd18-206ENSMUST00000203650 797 ntTSL 5 BASIC16.08■□□□□ 0.16
Vcpip1Q8CDG3 Pard6a-204ENSMUST00000212352 1234 ntTSL 2 BASIC16.08■□□□□ 0.16
Vcpip1Q8CDG3 Ndufb9-201ENSMUST00000022980 704 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Vcpip1Q8CDG3 Cort-201ENSMUST00000030815 677 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Vcpip1Q8CDG3 9130401M01Rik-201ENSMUST00000100655 1341 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Vcpip1Q8CDG3 Gm3928-201ENSMUST00000121141 1307 ntBASIC16.08■□□□□ 0.16
Vcpip1Q8CDG3 Rbm22-201ENSMUST00000025506 2210 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Vcpip1Q8CDG3 Amn1-201ENSMUST00000095319 1369 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
Vcpip1Q8CDG3 Gm16976-202ENSMUST00000127408 1515 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Vcpip1Q8CDG3 1700051A21Rik-201ENSMUST00000147937 1516 ntTSL 5 BASIC16.08■□□□□ 0.16
Vcpip1Q8CDG3 Tssc4-201ENSMUST00000060433 1519 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Vcpip1Q8CDG3 Gm2061-201ENSMUST00000180623 2761 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Vcpip1Q8CDG3 Bend4-201ENSMUST00000169190 7935 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.16
Vcpip1Q8CDG3 Rbfox3-201ENSMUST00000017576 3150 ntAPPRIS P4 TSL 1 (best) BASIC16.08■□□□□ 0.16
Vcpip1Q8CDG3 Mtfr2-201ENSMUST00000169712 1991 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Vcpip1Q8CDG3 Ifrd1-201ENSMUST00000001672 3378 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Vcpip1Q8CDG3 Il11ra1-201ENSMUST00000098132 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Vcpip1Q8CDG3 Ankrd24-201ENSMUST00000119336 3561 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
Vcpip1Q8CDG3 Six3os1-212ENSMUST00000177220 5601 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Vcpip1Q8CDG3 Fam160b1-201ENSMUST00000036407 5630 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Vcpip1Q8CDG3 Mark2-209ENSMUST00000165965 2874 ntAPPRIS P4 TSL 1 (best) BASIC16.07■□□□□ 0.16
Vcpip1Q8CDG3 Acot3-201ENSMUST00000021653 3431 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
Vcpip1Q8CDG3 Tmem254c-202ENSMUST00000100819 1211 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Vcpip1Q8CDG3 Gm25990-201ENSMUST00000102440 86 ntBASIC16.07■□□□□ 0.16
Vcpip1Q8CDG3 Park7-203ENSMUST00000105674 937 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
Vcpip1Q8CDG3 Tex30-206ENSMUST00000133677 935 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Vcpip1Q8CDG3 1700023H06Rik-201ENSMUST00000161006 1044 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Vcpip1Q8CDG3 Gm18489-201ENSMUST00000172565 551 ntBASIC16.07■□□□□ 0.16
Vcpip1Q8CDG3 Coa3-201ENSMUST00000017332 886 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Vcpip1Q8CDG3 Gm26549-201ENSMUST00000181112 1209 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Vcpip1Q8CDG3 Gsdmcl2-204ENSMUST00000186026 736 ntBASIC16.07■□□□□ 0.16
Vcpip1Q8CDG3 Gsdmcl1-202ENSMUST00000190937 735 ntBASIC16.07■□□□□ 0.16
Vcpip1Q8CDG3 Hmgb1-rs17-201ENSMUST00000210634 972 ntBASIC16.07■□□□□ 0.16
Vcpip1Q8CDG3 AC161829.1-201ENSMUST00000220298 281 ntBASIC16.07■□□□□ 0.16
Vcpip1Q8CDG3 Rps4l-201ENSMUST00000071745 943 ntBASIC16.07■□□□□ 0.16
Vcpip1Q8CDG3 Pdlim4-202ENSMUST00000093109 962 ntTSL 5 BASIC16.07■□□□□ 0.16
Vcpip1Q8CDG3 Gins4-201ENSMUST00000033950 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Vcpip1Q8CDG3 Mtfp1-201ENSMUST00000004868 1411 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Vcpip1Q8CDG3 Gm38575-203ENSMUST00000215824 1490 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Vcpip1Q8CDG3 Clns1a-201ENSMUST00000026506 1504 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Vcpip1Q8CDG3 Gm26702-201ENSMUST00000181730 4570 ntTSL 5 BASIC16.07■□□□□ 0.16
Vcpip1Q8CDG3 Lrrc32-203ENSMUST00000205956 4576 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
Vcpip1Q8CDG3 Acly-202ENSMUST00000107385 1741 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Vcpip1Q8CDG3 Aen-201ENSMUST00000107421 2007 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
Vcpip1Q8CDG3 Syndig1-201ENSMUST00000109934 2081 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
Vcpip1Q8CDG3 Ggn-204ENSMUST00000208330 2205 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
Vcpip1Q8CDG3 Pld3-202ENSMUST00000117611 2297 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Vcpip1Q8CDG3 AC162938.1-201ENSMUST00000213140 2323 ntBASIC16.07■□□□□ 0.16
Vcpip1Q8CDG3 Nfkbie-201ENSMUST00000024742 2422 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Vcpip1Q8CDG3 Klf15-203ENSMUST00000203039 2482 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
Vcpip1Q8CDG3 Limk1-201ENSMUST00000015137 3331 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Vcpip1Q8CDG3 Selenon-201ENSMUST00000060435 3445 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
Vcpip1Q8CDG3 4930402H24Rik-202ENSMUST00000110243 1984 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Vcpip1Q8CDG3 Mapk8ip3-203ENSMUST00000115229 5603 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
Vcpip1Q8CDG3 Ntng1-205ENSMUST00000106575 1620 ntAPPRIS ALT1 TSL 5 BASIC16.06■□□□□ 0.16
Vcpip1Q8CDG3 Ntng1-202ENSMUST00000072596 1620 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Vcpip1Q8CDG3 Ttc9c-201ENSMUST00000088092 1585 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Vcpip1Q8CDG3 Add1-203ENSMUST00000114335 4547 ntTSL 5 BASIC16.06■□□□□ 0.16
Vcpip1Q8CDG3 Arl11-201ENSMUST00000055159 1482 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Vcpip1Q8CDG3 Gm42802-201ENSMUST00000202475 456 ntTSL 2 BASIC16.06■□□□□ 0.16
Vcpip1Q8CDG3 Lat-206ENSMUST00000206793 1215 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
Vcpip1Q8CDG3 Mrpl34-201ENSMUST00000048914 607 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Vcpip1Q8CDG3 Cd300c-201ENSMUST00000061637 690 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
Vcpip1Q8CDG3 Cd300c-202ENSMUST00000092466 700 ntAPPRIS P5 TSL 5 BASIC16.06■□□□□ 0.16
Vcpip1Q8CDG3 Zbtb14-201ENSMUST00000062369 3625 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Vcpip1Q8CDG3 Nr3c2-203ENSMUST00000109912 5675 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Vcpip1Q8CDG3 Plod2-203ENSMUST00000160359 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Vcpip1Q8CDG3 Rbbp9-201ENSMUST00000028915 2170 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Vcpip1Q8CDG3 Nptn-201ENSMUST00000085651 2024 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Vcpip1Q8CDG3 Sacs-201ENSMUST00000089394 3345 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Vcpip1Q8CDG3 Sirpa-202ENSMUST00000099113 3342 ntTSL 3 BASIC16.06■□□□□ 0.16
Vcpip1Q8CDG3 Chaf1b-202ENSMUST00000117099 1894 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
Vcpip1Q8CDG3 4933415F23Rik-201ENSMUST00000073179 1781 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
Vcpip1Q8CDG3 A830012C17Rik-201ENSMUST00000131498 1665 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Vcpip1Q8CDG3 Atp6v0d1-201ENSMUST00000013304 1629 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Vcpip1Q8CDG3 Cbs-201ENSMUST00000067801 2497 ntAPPRIS P4 TSL 1 (best) BASIC16.05■□□□□ 0.16
Vcpip1Q8CDG3 Cfl1-202ENSMUST00000209469 2354 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Vcpip1Q8CDG3 Penk-201ENSMUST00000070375 1449 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Vcpip1Q8CDG3 Hbb-bh0-201ENSMUST00000124800 129 ntBASIC16.05■□□□□ 0.16
Vcpip1Q8CDG3 Emp3-202ENSMUST00000164119 784 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Vcpip1Q8CDG3 Atp5o-201ENSMUST00000023677 838 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Vcpip1Q8CDG3 A330070K13Rik-201ENSMUST00000063656 633 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Vcpip1Q8CDG3 Gm5145-201ENSMUST00000095633 837 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
Vcpip1Q8CDG3 Tubgcp4-215ENSMUST00000186659 2915 ntAPPRIS ALT1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Vcpip1Q8CDG3 Rnf44-201ENSMUST00000037422 3734 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Vcpip1Q8CDG3 Atf7-202ENSMUST00000108828 2887 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Vcpip1Q8CDG3 Slc18b1-206ENSMUST00000179321 2843 ntTSL 5 BASIC16.05■□□□□ 0.16
Vcpip1Q8CDG3 Lpcat2-201ENSMUST00000046290 2811 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Vcpip1Q8CDG3 Actg1-204ENSMUST00000106215 1827 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Vcpip1Q8CDG3 Srrm3-204ENSMUST00000144211 3932 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Vcpip1Q8CDG3 Tmbim6-201ENSMUST00000023749 2452 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Retrieved 100 of 76,532 protein–RNA pairs in 33.1 ms