Protein–RNA interactions for Protein: P63158

Hmgb1, High mobility group protein B1, mousemouse

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb1P63158 Cds1-201ENSMUST00000031273 3924 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Hmgb1P63158 Ltv1-201ENSMUST00000019950 2297 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Hmgb1P63158 Rgs3-201ENSMUST00000065870 4698 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Hmgb1P63158 Zfp212-201ENSMUST00000009411 2801 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Hmgb1P63158 Sox5-202ENSMUST00000077160 2526 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Hmgb1P63158 Kdm6b-201ENSMUST00000094077 6654 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
Hmgb1P63158 Gm45504-201ENSMUST00000211407 2107 ntBASIC16.45■□□□□ 0.22
Hmgb1P63158 Gjb3-202ENSMUST00000106091 1623 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Hmgb1P63158 Fdx1-202ENSMUST00000214013 2759 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Hmgb1P63158 Adgrd2-ps-201ENSMUST00000118797 2662 ntBASIC16.44■□□□□ 0.22
Hmgb1P63158 Nyap1-204ENSMUST00000212152 2499 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
Hmgb1P63158 Tle1-202ENSMUST00000072695 3644 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
Hmgb1P63158 Mapk9-210ENSMUST00000178543 4677 ntAPPRIS ALT1 TSL 5 BASIC16.44■□□□□ 0.22
Hmgb1P63158 Cct6b-202ENSMUST00000100722 1871 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Hmgb1P63158 Cdk18-201ENSMUST00000027697 4355 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Hmgb1P63158 Gm36445-203ENSMUST00000209951 1597 ntTSL 5 BASIC16.44■□□□□ 0.22
Hmgb1P63158 Reps2-202ENSMUST00000112334 7675 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
Hmgb1P63158 Kcnn1-208ENSMUST00000212611 2528 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
Hmgb1P63158 Proca1-203ENSMUST00000108317 1359 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
Hmgb1P63158 P2rx6-203ENSMUST00000171002 1353 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Hmgb1P63158 Gm45188-201ENSMUST00000207592 1369 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Hmgb1P63158 Mdk-204ENSMUST00000111309 771 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
Hmgb1P63158 Rhox2h-201ENSMUST00000115162 779 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Hmgb1P63158 4930481A15Rik-201ENSMUST00000128542 2106 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Hmgb1P63158 Gm11467-201ENSMUST00000129407 674 ntTSL 3 BASIC16.44■□□□□ 0.22
Hmgb1P63158 Ptger1-201ENSMUST00000019608 4694 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Hmgb1P63158 Kcnk16-201ENSMUST00000024155 916 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
Hmgb1P63158 Cdkl3-201ENSMUST00000063303 2765 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
Hmgb1P63158 4930513N10Rik-203ENSMUST00000145562 2803 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Hmgb1P63158 Klhl26-202ENSMUST00000166976 2734 ntTSL 2 BASIC16.44■□□□□ 0.22
Hmgb1P63158 Kcnh4-202ENSMUST00000107363 3948 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
Hmgb1P63158 Rabepk-203ENSMUST00000118108 1431 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
Hmgb1P63158 Rhot1-202ENSMUST00000055056 4260 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
Hmgb1P63158 Plin5-201ENSMUST00000019808 1986 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Hmgb1P63158 Micall2-201ENSMUST00000044642 3346 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Hmgb1P63158 Zbtb20-202ENSMUST00000114690 2759 ntAPPRIS ALT1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Hmgb1P63158 Rbm22-201ENSMUST00000025506 2210 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Hmgb1P63158 Gtf2h5-201ENSMUST00000039487 2245 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Hmgb1P63158 Cpne6-201ENSMUST00000074225 2201 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
Hmgb1P63158 Slc39a11-202ENSMUST00000071539 2664 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
Hmgb1P63158 Agbl5-213ENSMUST00000201917 3579 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
Hmgb1P63158 Ephx3-202ENSMUST00000162117 1590 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
Hmgb1P63158 Actg1-204ENSMUST00000106215 1827 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Hmgb1P63158 Elac1-201ENSMUST00000041138 4971 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Hmgb1P63158 Mansc4-201ENSMUST00000100780 1125 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
Hmgb1P63158 Hnrnpa1l2-ps-201ENSMUST00000129154 964 ntBASIC16.43■□□□□ 0.22
Hmgb1P63158 Gm7230-201ENSMUST00000173026 815 ntBASIC16.43■□□□□ 0.22
Hmgb1P63158 Gm29019-202ENSMUST00000188623 564 ntTSL 2 BASIC16.43■□□□□ 0.22
Hmgb1P63158 Gm44930-202ENSMUST00000208733 689 ntTSL 5 BASIC16.43■□□□□ 0.22
Hmgb1P63158 Atp6v0c-202ENSMUST00000098862 796 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
Hmgb1P63158 Gm26608-201ENSMUST00000180740 1954 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Hmgb1P63158 Hnrnpr-202ENSMUST00000105850 2683 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Hmgb1P63158 Tjp2-201ENSMUST00000099558 4591 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Hmgb1P63158 Cspg5-201ENSMUST00000035058 3870 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
Hmgb1P63158 Orai3-203ENSMUST00000121504 2141 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Hmgb1P63158 Fen1-204ENSMUST00000156291 2373 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
Hmgb1P63158 Kdm8-201ENSMUST00000033010 2389 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Hmgb1P63158 Psen2-201ENSMUST00000010753 2004 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
Hmgb1P63158 Mospd2-201ENSMUST00000004715 2015 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Hmgb1P63158 Gm17108-201ENSMUST00000168625 2877 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Hmgb1P63158 Brd7-201ENSMUST00000034085 3625 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Hmgb1P63158 Tbk1-201ENSMUST00000020316 3024 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Hmgb1P63158 Slc22a18-202ENSMUST00000105917 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Hmgb1P63158 Serp1-201ENSMUST00000029385 4611 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Hmgb1P63158 4930558J18Rik-201ENSMUST00000181949 2052 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Hmgb1P63158 Acly-202ENSMUST00000107385 1741 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Hmgb1P63158 Gm12620-201ENSMUST00000119791 1986 ntBASIC16.42■□□□□ 0.22
Hmgb1P63158 Gm12612-201ENSMUST00000140182 1986 ntBASIC16.42■□□□□ 0.22
Hmgb1P63158 Nsg2-201ENSMUST00000020537 2239 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Hmgb1P63158 Bst1-201ENSMUST00000101237 2856 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Hmgb1P63158 Slc7a7-209ENSMUST00000226753 2126 ntAPPRIS P1 BASIC16.42■□□□□ 0.22
Hmgb1P63158 Hnrnpa2b1-201ENSMUST00000069949 1647 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Hmgb1P63158 Drap1-202ENSMUST00000113673 744 ntTSL 2 BASIC16.42■□□□□ 0.22
Hmgb1P63158 Fosb-206ENSMUST00000208446 1090 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Hmgb1P63158 Dlgap1-211ENSMUST00000148486 5276 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Hmgb1P63158 Dot1l-201ENSMUST00000105336 6808 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Hmgb1P63158 Rnf44-211ENSMUST00000134862 3797 ntTSL 5 BASIC16.42■□□□□ 0.22
Hmgb1P63158 Ccdc103-201ENSMUST00000021307 1841 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Hmgb1P63158 Rxra-202ENSMUST00000100251 1952 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Hmgb1P63158 Tor1aip1-201ENSMUST00000027738 1952 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
Hmgb1P63158 Kmt5b-206ENSMUST00000113973 6130 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
Hmgb1P63158 Trank1-201ENSMUST00000078626 10520 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
Hmgb1P63158 Sp2-203ENSMUST00000107624 3055 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Hmgb1P63158 Lrrc41-201ENSMUST00000030471 3065 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Hmgb1P63158 Slc2a6-202ENSMUST00000102890 1887 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Hmgb1P63158 Slc7a15-204ENSMUST00000165657 1467 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Hmgb1P63158 Slc7a15-202ENSMUST00000095863 1467 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Hmgb1P63158 Mybl1-201ENSMUST00000088658 4980 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Hmgb1P63158 Loxl2-201ENSMUST00000022660 5316 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Hmgb1P63158 Comtd1-202ENSMUST00000124549 2314 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Hmgb1P63158 Pom121l2-202ENSMUST00000117882 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Hmgb1P63158 Fam76b-201ENSMUST00000059579 3702 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Hmgb1P63158 Hacd4-201ENSMUST00000030221 2089 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Hmgb1P63158 Spock1-203ENSMUST00000185905 2794 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Hmgb1P63158 Dnajc27-202ENSMUST00000049584 2934 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
Hmgb1P63158 Dusp13-208ENSMUST00000183698 1019 ntTSL 5 BASIC16.41■□□□□ 0.22
Hmgb1P63158 6430573P05Rik-202ENSMUST00000192648 597 ntTSL 3 BASIC16.41■□□□□ 0.22
Hmgb1P63158 4930442P19Rik-201ENSMUST00000193163 1240 ntBASIC16.41■□□□□ 0.22
Hmgb1P63158 Timm10b-211ENSMUST00000210350 529 ntAPPRIS ALT2 TSL 2 BASIC16.41■□□□□ 0.22
Hmgb1P63158 Mrpl17-201ENSMUST00000033170 1028 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Retrieved 100 of 76,532 protein–RNA pairs in 24.4 ms