Protein–RNA interactions for Protein: P11260

Lire1, LINE-1 retrotransposable element ORF1 protein, mousemouse

Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lire1P11260 Degs1-201ENSMUST00000035295 2048 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Lire1P11260 Cdyl2-201ENSMUST00000109102 2411 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Lire1P11260 Pld3-201ENSMUST00000117095 2282 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Lire1P11260 Pofut2-201ENSMUST00000020493 2290 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Lire1P11260 Ermard-202ENSMUST00000061688 2120 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Lire1P11260 Cidec-202ENSMUST00000113089 1720 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Lire1P11260 Bnc1-201ENSMUST00000026096 4646 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Lire1P11260 Pde4d-207ENSMUST00000120664 4207 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Lire1P11260 Brd3-203ENSMUST00000113941 5289 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
Lire1P11260 Pgap2-203ENSMUST00000120119 1979 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Lire1P11260 Ccr9-202ENSMUST00000163559 3004 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Lire1P11260 BC003965-201ENSMUST00000088307 3022 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
Lire1P11260 Ube2j1-202ENSMUST00000124992 3530 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Lire1P11260 Sctr-202ENSMUST00000189037 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Lire1P11260 Mapk9-210ENSMUST00000178543 4677 ntAPPRIS ALT1 TSL 5 BASIC14.18□□□□□ -0.14
Lire1P11260 Mapk9-201ENSMUST00000020634 4675 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
Lire1P11260 Elf4-202ENSMUST00000114958 6088 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Lire1P11260 Vldlr-208ENSMUST00000172302 3855 ntAPPRIS ALT1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Lire1P11260 AC154527.4-201ENSMUST00000224364 1667 ntBASIC14.18□□□□□ -0.14
Lire1P11260 Tfap2a-201ENSMUST00000021787 3487 ntAPPRIS ALT1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Lire1P11260 Nfatc1-204ENSMUST00000170905 4896 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Lire1P11260 Crybb1-202ENSMUST00000112375 793 ntAPPRIS P1 TSL 3 BASIC14.18□□□□□ -0.14
Lire1P11260 Prss45-202ENSMUST00000146794 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Lire1P11260 Ccl27a-217ENSMUST00000155240 343 ntTSL 2 BASIC14.18□□□□□ -0.14
Lire1P11260 1700039E22Rik-201ENSMUST00000174082 770 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Lire1P11260 Gm2756-201ENSMUST00000195851 400 ntBASIC14.18□□□□□ -0.14
Lire1P11260 Gm44264-201ENSMUST00000203049 742 ntTSL 3 BASIC14.18□□□□□ -0.14
Lire1P11260 Abhd18-206ENSMUST00000203650 797 ntTSL 5 BASIC14.18□□□□□ -0.14
Lire1P11260 Ap2s1-204ENSMUST00000205607 372 ntTSL 3 BASIC14.18□□□□□ -0.14
Lire1P11260 Timm10b-211ENSMUST00000210350 529 ntAPPRIS ALT2 TSL 2 BASIC14.18□□□□□ -0.14
Lire1P11260 5830454E08Rik-202ENSMUST00000213974 744 ntBASIC14.18□□□□□ -0.14
Lire1P11260 Psmb5-202ENSMUST00000227257 622 ntBASIC14.18□□□□□ -0.14
Lire1P11260 Lsmem1-201ENSMUST00000095760 1213 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Lire1P11260 Tacc3-201ENSMUST00000074849 2669 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Lire1P11260 Gm26752-201ENSMUST00000181086 1537 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Lire1P11260 Ggnbp1-201ENSMUST00000053683 1525 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
Lire1P11260 Mink1-203ENSMUST00000079244 4829 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Lire1P11260 Plch2-207ENSMUST00000139976 5322 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
Lire1P11260 Rgs6-208ENSMUST00000186458 5588 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Lire1P11260 Ptp4a3-204ENSMUST00000167582 2640 ntTSL 5 BASIC14.18□□□□□ -0.14
Lire1P11260 Tatdn2-205ENSMUST00000204753 2645 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Lire1P11260 Clstn1-202ENSMUST00000105691 4459 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Lire1P11260 Gm4756-201ENSMUST00000207585 1716 ntTSL 5 BASIC14.18□□□□□ -0.14
Lire1P11260 Mtss1-201ENSMUST00000080371 4938 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Lire1P11260 4933433G15Rik-201ENSMUST00000180533 1481 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Lire1P11260 Gm6588-201ENSMUST00000100882 2313 ntAPPRIS P1 BASIC14.18□□□□□ -0.14
Lire1P11260 Mbp-202ENSMUST00000062446 2186 ntAPPRIS P4 TSL 1 (best) BASIC14.17□□□□□ -0.14
Lire1P11260 Islr2-205ENSMUST00000170421 4071 ntAPPRIS P3 TSL 3 BASIC14.17□□□□□ -0.14
Lire1P11260 Adam22-203ENSMUST00000088744 9245 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
Lire1P11260 Pcdhb22-201ENSMUST00000097609 2266 ntTSL 2 BASIC14.17□□□□□ -0.14
Lire1P11260 Mettl21a-202ENSMUST00000114079 2030 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Lire1P11260 Ano7-201ENSMUST00000058682 2963 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Lire1P11260 Ankra2-201ENSMUST00000022164 1755 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Lire1P11260 Nagpa-201ENSMUST00000023911 2143 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Lire1P11260 Inhba-202ENSMUST00000164993 1529 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Lire1P11260 Rmi2-201ENSMUST00000037913 3742 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Lire1P11260 Alas1-207ENSMUST00000141118 3399 ntAPPRIS P2 TSL 5 BASIC14.17□□□□□ -0.14
Lire1P11260 Dnase2a-202ENSMUST00000109744 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Lire1P11260 Kptn-201ENSMUST00000006178 1630 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Lire1P11260 Gm25990-201ENSMUST00000102440 86 ntBASIC14.17□□□□□ -0.14
Lire1P11260 1110004F10Rik-203ENSMUST00000106608 927 ntTSL 3 BASIC14.17□□□□□ -0.14
Lire1P11260 Gm11750-201ENSMUST00000146016 583 ntTSL 5 BASIC14.17□□□□□ -0.14
Lire1P11260 Tmem208-201ENSMUST00000015000 785 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Lire1P11260 Ubl5-204ENSMUST00000160682 489 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
Lire1P11260 Gm5264-201ENSMUST00000190584 848 ntBASIC14.17□□□□□ -0.14
Lire1P11260 Ly6g6f-201ENSMUST00000038507 1141 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Lire1P11260 Gss-203ENSMUST00000130881 1724 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Lire1P11260 Slc48a1-201ENSMUST00000117892 2536 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Lire1P11260 Tssc4-206ENSMUST00000177841 1364 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
Lire1P11260 Ttc3-201ENSMUST00000117648 7417 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
Lire1P11260 Htr7-202ENSMUST00000164639 3057 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Lire1P11260 Pde4b-208ENSMUST00000106911 3020 ntAPPRIS ALT1 TSL 5 BASIC14.17□□□□□ -0.14
Lire1P11260 Nos1ap-202ENSMUST00000160456 3022 ntAPPRIS P2 TSL 5 BASIC14.17□□□□□ -0.14
Lire1P11260 Rnf145-201ENSMUST00000019333 3570 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Lire1P11260 Cgn-203ENSMUST00000153263 2210 ntTSL 2 BASIC14.17□□□□□ -0.14
Lire1P11260 Stx5a-201ENSMUST00000010254 1780 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
Lire1P11260 Irf7-202ENSMUST00000097952 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Lire1P11260 Nfasc-201ENSMUST00000043189 5072 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Lire1P11260 Acp7-201ENSMUST00000040112 1978 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Lire1P11260 Chrm4-201ENSMUST00000045537 1440 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
Lire1P11260 Zfp365-201ENSMUST00000064656 4259 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Lire1P11260 Dohh-201ENSMUST00000072751 1444 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Lire1P11260 Phactr3-201ENSMUST00000103065 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Lire1P11260 Cwc27-201ENSMUST00000022228 2071 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Lire1P11260 Rad51-201ENSMUST00000028795 3368 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Lire1P11260 Pard6b-201ENSMUST00000052125 3399 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Lire1P11260 Ptn-201ENSMUST00000101534 1614 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Lire1P11260 F830212C03Rik-201ENSMUST00000191701 2285 ntBASIC14.16□□□□□ -0.14
Lire1P11260 Tgfa-201ENSMUST00000032066 4527 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Lire1P11260 Kdm5c-202ENSMUST00000112584 5900 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
Lire1P11260 Arhgef17-201ENSMUST00000107032 10190 ntAPPRIS P2 TSL 5 BASIC14.16□□□□□ -0.14
Lire1P11260 Cacnb2-202ENSMUST00000114719 2117 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Lire1P11260 Gm15467-201ENSMUST00000120582 445 ntBASIC14.16□□□□□ -0.14
Lire1P11260 Oip5-202ENSMUST00000123818 1082 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Lire1P11260 Psmb1-201ENSMUST00000014913 1036 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Lire1P11260 Sirpa-213ENSMUST00000163034 677 ntTSL 3 BASIC14.16□□□□□ -0.14
Lire1P11260 Gm43332-201ENSMUST00000202511 1044 ntBASIC14.16□□□□□ -0.14
Lire1P11260 A330070K13Rik-201ENSMUST00000063656 633 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Lire1P11260 Aurkaip1-201ENSMUST00000084097 1159 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Lire1P11260 Psma5-201ENSMUST00000090569 1239 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 72.8 ms