Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Tmem183a-201ENSMUST00000049470 3149 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Scn11aQ9R053 Trim68-205ENSMUST00000210855 2301 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Scn11aQ9R053 Tcf25-205ENSMUST00000212470 2572 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Scn11aQ9R053 Hic2-202ENSMUST00000115698 2765 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Scn11aQ9R053 Ccdc69-202ENSMUST00000108880 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Scn11aQ9R053 Gm37933-201ENSMUST00000193964 981 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Scn11aQ9R053 Gm8515-201ENSMUST00000194852 576 ntBASIC17.54■□□□□ 0.4
Scn11aQ9R053 Il31-203ENSMUST00000198901 984 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Scn11aQ9R053 Gm29682-201ENSMUST00000210896 1251 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Scn11aQ9R053 Cox6b1-201ENSMUST00000075738 618 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Scn11aQ9R053 Gm36839-201ENSMUST00000222088 2093 ntTSL 5 BASIC17.54■□□□□ 0.4
Scn11aQ9R053 Unc93b1-203ENSMUST00000162708 2266 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
Scn11aQ9R053 Krt18-201ENSMUST00000023803 1400 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Scn11aQ9R053 Rplp0-201ENSMUST00000086519 1358 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Scn11aQ9R053 Krt20-201ENSMUST00000017743 1927 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Scn11aQ9R053 Pdia2-201ENSMUST00000039113 1721 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Scn11aQ9R053 Disp2-202ENSMUST00000063975 1505 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Scn11aQ9R053 Gm6263-201ENSMUST00000120029 1342 ntBASIC17.54■□□□□ 0.4
Scn11aQ9R053 Phyhip-201ENSMUST00000003561 2838 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Scn11aQ9R053 Mapk14-204ENSMUST00000114754 3592 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Scn11aQ9R053 Adcy3-202ENSMUST00000124505 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Scn11aQ9R053 Ntan1-202ENSMUST00000115805 984 ntTSL 3 BASIC17.53■□□□□ 0.4
Scn11aQ9R053 Hist3h2bb-ps-201ENSMUST00000117558 465 ntBASIC17.53■□□□□ 0.4
Scn11aQ9R053 Gm12859-201ENSMUST00000117834 427 ntBASIC17.53■□□□□ 0.4
Scn11aQ9R053 Mir1897-201ENSMUST00000122581 272 ntBASIC17.53■□□□□ 0.4
Scn11aQ9R053 Atpif1-203ENSMUST00000152993 462 ntTSL 2 BASIC17.53■□□□□ 0.4
Scn11aQ9R053 Gm15853-201ENSMUST00000160268 556 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Scn11aQ9R053 Mettl26-203ENSMUST00000163356 534 ntTSL 5 BASIC17.53■□□□□ 0.4
Scn11aQ9R053 AC121598.1-201ENSMUST00000228224 1019 ntBASIC17.53■□□□□ 0.4
Scn11aQ9R053 Rxra-202ENSMUST00000100251 1952 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Scn11aQ9R053 AC124751.1-201ENSMUST00000222716 1408 ntBASIC17.53■□□□□ 0.4
Scn11aQ9R053 Rhcg-201ENSMUST00000032766 2090 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Scn11aQ9R053 Ydjc-203ENSMUST00000115706 3097 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Scn11aQ9R053 Pex5-202ENSMUST00000080557 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Scn11aQ9R053 Adgrg5-205ENSMUST00000166802 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Scn11aQ9R053 Ush1c-202ENSMUST00000078680 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Scn11aQ9R053 Rgl2-201ENSMUST00000047503 3252 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Scn11aQ9R053 Mmp11-202ENSMUST00000120281 1793 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Scn11aQ9R053 Galnt17-202ENSMUST00000160609 2875 ntTSL 5 BASIC17.53■□□□□ 0.4
Scn11aQ9R053 Espnl-202ENSMUST00000176156 2886 ntTSL 5 BASIC17.53■□□□□ 0.4
Scn11aQ9R053 Snrnp27-202ENSMUST00000113683 1005 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Scn11aQ9R053 Gm7820-201ENSMUST00000121012 1052 ntBASIC17.53■□□□□ 0.4
Scn11aQ9R053 1700029H14Rik-204ENSMUST00000151400 1216 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
Scn11aQ9R053 Gstt1-201ENSMUST00000001713 1037 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Scn11aQ9R053 Gm17344-202ENSMUST00000173980 621 ntTSL 5 BASIC17.53■□□□□ 0.4
Scn11aQ9R053 Agrp-202ENSMUST00000194091 734 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
Scn11aQ9R053 AA619741-201ENSMUST00000195095 646 ntBASIC17.53■□□□□ 0.4
Scn11aQ9R053 AI467606-202ENSMUST00000206102 832 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
Scn11aQ9R053 Olfr750-201ENSMUST00000048478 1132 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
Scn11aQ9R053 Pdia2-202ENSMUST00000120333 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
Scn11aQ9R053 Gm21983-201ENSMUST00000154724 1690 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
Scn11aQ9R053 Chd5-205ENSMUST00000164662 9375 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
Scn11aQ9R053 Rnf103-202ENSMUST00000114178 3431 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Scn11aQ9R053 Rnaseh2a-203ENSMUST00000109738 2044 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Scn11aQ9R053 Gm20743-201ENSMUST00000191735 1576 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Scn11aQ9R053 Gm15321-201ENSMUST00000121290 288 ntBASIC17.52■□□□□ 0.4
Scn11aQ9R053 Nudcd2-203ENSMUST00000127382 727 ntTSL 2 BASIC17.52■□□□□ 0.4
Scn11aQ9R053 Gm13994-201ENSMUST00000137397 513 ntTSL 5 BASIC17.52■□□□□ 0.4
Scn11aQ9R053 5430431A17Rik-201ENSMUST00000206342 795 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Scn11aQ9R053 Wdr45-225ENSMUST00000208443 1172 ntTSL 5 BASIC17.52■□□□□ 0.4
Scn11aQ9R053 Mobp-207ENSMUST00000215512 498 ntTSL 2 BASIC17.52■□□□□ 0.4
Scn11aQ9R053 Tspan3-203ENSMUST00000215906 842 ntTSL 3 BASIC17.52■□□□□ 0.4
Scn11aQ9R053 2610008E11Rik-204ENSMUST00000220220 799 ntTSL 2 BASIC17.52■□□□□ 0.4
Scn11aQ9R053 Gpr137-205ENSMUST00000166115 1845 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Scn11aQ9R053 Dnase1l2-202ENSMUST00000119932 1629 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Scn11aQ9R053 Gm43352-201ENSMUST00000196419 3065 ntBASIC17.52■□□□□ 0.39
Scn11aQ9R053 Atp6v0a1-203ENSMUST00000103110 2716 ntTSL 5 BASIC17.51■□□□□ 0.39
Scn11aQ9R053 Ctnnbip1-202ENSMUST00000105692 634 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Scn11aQ9R053 Gm15420-201ENSMUST00000133274 382 ntTSL 3 BASIC17.51■□□□□ 0.39
Scn11aQ9R053 Flt3l-201ENSMUST00000146760 1075 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Scn11aQ9R053 4930592C13Rik-201ENSMUST00000196791 661 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Scn11aQ9R053 Cnpy2-201ENSMUST00000026446 763 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
Scn11aQ9R053 Gm26882-201ENSMUST00000181611 1537 ntTSL 5 BASIC17.51■□□□□ 0.39
Scn11aQ9R053 Aars-201ENSMUST00000034441 5750 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Scn11aQ9R053 Gm6297-201ENSMUST00000181475 2146 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Scn11aQ9R053 Zfp639-205ENSMUST00000193287 2211 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Scn11aQ9R053 Cldn14-201ENSMUST00000050962 1457 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Scn11aQ9R053 6030408B16Rik-202ENSMUST00000191426 1947 ntAPPRIS P5 TSL 1 (best) BASIC17.51■□□□□ 0.39
Scn11aQ9R053 Psmd12-201ENSMUST00000021063 1904 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Scn11aQ9R053 Ints8-203ENSMUST00000108319 3220 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Scn11aQ9R053 Tdrd12-205ENSMUST00000205407 1412 ntTSL 5 BASIC17.51■□□□□ 0.39
Scn11aQ9R053 Hacd3-201ENSMUST00000036615 2709 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Scn11aQ9R053 Cep63-201ENSMUST00000093791 2696 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Scn11aQ9R053 Hars-201ENSMUST00000001416 1987 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Scn11aQ9R053 Psmc3-202ENSMUST00000067663 1636 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Scn11aQ9R053 Gm11478-201ENSMUST00000117851 599 ntBASIC17.51■□□□□ 0.39
Scn11aQ9R053 1700042O10Rik-201ENSMUST00000151032 1075 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Scn11aQ9R053 Ascl5-201ENSMUST00000180436 567 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
Scn11aQ9R053 2900022M07Rik-201ENSMUST00000193912 1017 ntBASIC17.51■□□□□ 0.39
Scn11aQ9R053 Gm9229-201ENSMUST00000222777 126 ntBASIC17.51■□□□□ 0.39
Scn11aQ9R053 Rpl13a-ps1-201ENSMUST00000071866 612 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
Scn11aQ9R053 Kcnip2-203ENSMUST00000086993 1005 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Scn11aQ9R053 4930558J18Rik-201ENSMUST00000181949 2052 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Scn11aQ9R053 Klhl26-204ENSMUST00000209567 2615 ntTSL 3 BASIC17.5■□□□□ 0.39
Scn11aQ9R053 Eif2a-201ENSMUST00000029387 2299 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Scn11aQ9R053 Slc45a4-204ENSMUST00000132607 2457 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Scn11aQ9R053 Lonrf3-201ENSMUST00000016383 2911 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Scn11aQ9R053 Csgalnact2-201ENSMUST00000049344 3661 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Scn11aQ9R053 Gm26917-202ENSMUST00000192833 3329 ntBASIC17.5■□□□□ 0.39
Scn11aQ9R053 Ppp1r13b-201ENSMUST00000054815 4389 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Retrieved 100 of 76,532 protein–RNA pairs in 39 ms