Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Ighv2-3-201ENSMUST00000178229 347 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
Scn4aQ9ER60 Ldlrad2-201ENSMUST00000178923 429 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
Scn4aQ9ER60 Gm5441-202ENSMUST00000190132 449 ntTSL 2 BASIC20.09■□□□□ 0.81
Scn4aQ9ER60 Scoc-203ENSMUST00000212031 409 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
Scn4aQ9ER60 Mobp-207ENSMUST00000215512 498 ntTSL 2 BASIC20.09■□□□□ 0.81
Scn4aQ9ER60 CT033793.1-201ENSMUST00000216883 565 ntTSL 5 BASIC20.09■□□□□ 0.81
Scn4aQ9ER60 AC153144.2-201ENSMUST00000221766 451 ntTSL 5 BASIC20.09■□□□□ 0.81
Scn4aQ9ER60 Mrps22-201ENSMUST00000035034 1197 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Scn4aQ9ER60 Ppia-206ENSMUST00000213200 1450 ntTSL 5 BASIC20.09■□□□□ 0.81
Scn4aQ9ER60 Gm40765-201ENSMUST00000218612 1469 ntTSL 5 BASIC20.09■□□□□ 0.81
Scn4aQ9ER60 Slc37a4-203ENSMUST00000213388 2344 ntAPPRIS P2 TSL 1 (best) BASIC20.09■□□□□ 0.81
Scn4aQ9ER60 Apol7a-201ENSMUST00000010745 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Scn4aQ9ER60 Acvr2b-205ENSMUST00000215746 3175 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Scn4aQ9ER60 2810006K23Rik-202ENSMUST00000111477 1637 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Scn4aQ9ER60 Dao-203ENSMUST00000161610 1633 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Scn4aQ9ER60 Acy1-201ENSMUST00000024031 1529 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Scn4aQ9ER60 Neu4-202ENSMUST00000190212 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
Scn4aQ9ER60 Mff-201ENSMUST00000073025 1706 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Scn4aQ9ER60 Dancr-204ENSMUST00000132389 2347 ntBASIC20.09■□□□□ 0.81
Scn4aQ9ER60 Ghdc-201ENSMUST00000017891 2462 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Scn4aQ9ER60 Bmp4-201ENSMUST00000074077 2064 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Scn4aQ9ER60 Mir6979-201ENSMUST00000183927 56 ntBASIC20.09■□□□□ 0.81
Scn4aQ9ER60 Gm18916-201ENSMUST00000198264 1246 ntBASIC20.09■□□□□ 0.81
Scn4aQ9ER60 Gm44985-201ENSMUST00000206202 1016 ntBASIC20.09■□□□□ 0.81
Scn4aQ9ER60 Gm33056-201ENSMUST00000213234 1120 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Scn4aQ9ER60 Tmem210-201ENSMUST00000028340 516 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Scn4aQ9ER60 Tmem263-201ENSMUST00000095383 3616 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Scn4aQ9ER60 Senp3-202ENSMUST00000066760 2219 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Scn4aQ9ER60 Dmc1-201ENSMUST00000023065 2192 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Scn4aQ9ER60 Slc17a9-201ENSMUST00000094218 2275 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.81
Scn4aQ9ER60 Nt5c3b-203ENSMUST00000107397 1348 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
Scn4aQ9ER60 Art3-208ENSMUST00000121096 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.8
Scn4aQ9ER60 Gm14263-201ENSMUST00000117955 746 ntBASIC20.08■□□□□ 0.8
Scn4aQ9ER60 Tmem262-201ENSMUST00000143303 545 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Scn4aQ9ER60 Gm37008-201ENSMUST00000195712 319 ntBASIC20.08■□□□□ 0.8
Scn4aQ9ER60 AU022133-201ENSMUST00000200601 873 ntBASIC20.08■□□□□ 0.8
Scn4aQ9ER60 4930479H17Rik-201ENSMUST00000208824 292 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
Scn4aQ9ER60 Olfr171-201ENSMUST00000079891 945 ntAPPRIS P2 BASIC20.08■□□□□ 0.8
Scn4aQ9ER60 Riox2-203ENSMUST00000120674 1753 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
Scn4aQ9ER60 Slc29a1-203ENSMUST00000097317 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.8
Scn4aQ9ER60 Gm13327-201ENSMUST00000133391 2741 ntTSL 5 BASIC20.08■□□□□ 0.8
Scn4aQ9ER60 Cpxm1-201ENSMUST00000028897 2366 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Scn4aQ9ER60 Fam71f1-204ENSMUST00000166462 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Scn4aQ9ER60 Mis18bp1-208ENSMUST00000222244 2053 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Scn4aQ9ER60 Gm11290-201ENSMUST00000124833 396 ntTSL 3 BASIC20.07■□□□□ 0.8
Scn4aQ9ER60 Gm14235-201ENSMUST00000142445 366 ntTSL 3 BASIC20.07■□□□□ 0.8
Scn4aQ9ER60 Gm43094-201ENSMUST00000196549 921 ntBASIC20.07■□□□□ 0.8
Scn4aQ9ER60 Gm29705-201ENSMUST00000212598 474 ntBASIC20.07■□□□□ 0.8
Scn4aQ9ER60 Tldc2-201ENSMUST00000099140 608 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
Scn4aQ9ER60 Eif4enif1-203ENSMUST00000110049 3614 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Scn4aQ9ER60 Ppp2r5c-204ENSMUST00000221074 1971 ntTSL 5 BASIC20.07■□□□□ 0.8
Scn4aQ9ER60 Actg1-204ENSMUST00000106215 1827 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Scn4aQ9ER60 Gm21038-201ENSMUST00000222205 1383 ntBASIC20.07■□□□□ 0.8
Scn4aQ9ER60 Adcy9-203ENSMUST00000120080 4974 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
Scn4aQ9ER60 Ascc1-202ENSMUST00000164083 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Scn4aQ9ER60 Gm18336-201ENSMUST00000180787 2298 ntAPPRIS P1 BASIC20.07■□□□□ 0.8
Scn4aQ9ER60 Glra1-203ENSMUST00000108853 1797 ntTSL 5 BASIC20.06■□□□□ 0.8
Scn4aQ9ER60 Zfp57-201ENSMUST00000069250 1749 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
Scn4aQ9ER60 Hnrnpm-201ENSMUST00000087582 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
Scn4aQ9ER60 Tcf3-202ENSMUST00000020379 2829 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
Scn4aQ9ER60 Marcks-201ENSMUST00000092584 4048 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Scn4aQ9ER60 4930524O07Rik-203ENSMUST00000193135 2289 ntBASIC20.06■□□□□ 0.8
Scn4aQ9ER60 Deaf1-209ENSMUST00000211537 2882 ntTSL 2 BASIC20.06■□□□□ 0.8
Scn4aQ9ER60 Oprl1-203ENSMUST00000108766 1241 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Scn4aQ9ER60 Gm12203-201ENSMUST00000118235 598 ntBASIC20.06■□□□□ 0.8
Scn4aQ9ER60 Gm12209-201ENSMUST00000120089 596 ntBASIC20.06■□□□□ 0.8
Scn4aQ9ER60 Gm2991-201ENSMUST00000173338 480 ntBASIC20.06■□□□□ 0.8
Scn4aQ9ER60 Gm6082-201ENSMUST00000215204 454 ntBASIC20.06■□□□□ 0.8
Scn4aQ9ER60 3300002I08Rik-201ENSMUST00000051153 650 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Scn4aQ9ER60 Atp5f1-201ENSMUST00000118209 1604 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
Scn4aQ9ER60 Noc4l-201ENSMUST00000042147 2075 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Scn4aQ9ER60 Rbm47-203ENSMUST00000113724 2186 ntAPPRIS P3 TSL 5 BASIC20.06■□□□□ 0.8
Scn4aQ9ER60 Pnkp-202ENSMUST00000098478 1550 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Scn4aQ9ER60 Klhdc10-201ENSMUST00000068240 3951 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Scn4aQ9ER60 Saysd1-201ENSMUST00000059666 2315 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Scn4aQ9ER60 Mbp-204ENSMUST00000080658 2063 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Scn4aQ9ER60 Celf6-204ENSMUST00000121266 2610 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Scn4aQ9ER60 Gm4271-201ENSMUST00000174444 973 ntBASIC20.05■□□□□ 0.8
Scn4aQ9ER60 Gm4804-201ENSMUST00000182234 999 ntBASIC20.05■□□□□ 0.8
Scn4aQ9ER60 Gm26728-201ENSMUST00000185268 595 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Scn4aQ9ER60 Aym1-201ENSMUST00000066573 528 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
Scn4aQ9ER60 6430531B16Rik-201ENSMUST00000097970 1161 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
Scn4aQ9ER60 Atpaf2-201ENSMUST00000108721 1813 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Scn4aQ9ER60 Ankra2-208ENSMUST00000226100 1476 ntBASIC20.05■□□□□ 0.8
Scn4aQ9ER60 Synm-205ENSMUST00000208815 2697 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
Scn4aQ9ER60 Zrsr2-202ENSMUST00000112289 2735 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
Scn4aQ9ER60 Ewsr1-202ENSMUST00000073308 2269 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
Scn4aQ9ER60 Ubqln4-201ENSMUST00000008748 3330 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Scn4aQ9ER60 Cyp4f18-201ENSMUST00000003574 1702 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Scn4aQ9ER60 Mir686-201ENSMUST00000102174 109 ntBASIC20.04■□□□□ 0.8
Scn4aQ9ER60 Gm12241-201ENSMUST00000118330 726 ntBASIC20.04■□□□□ 0.8
Scn4aQ9ER60 Atp6v0e-201ENSMUST00000015719 794 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Scn4aQ9ER60 Myl10-202ENSMUST00000196068 911 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Scn4aQ9ER60 Myl10-203ENSMUST00000196436 598 ntTSL 3 BASIC20.04■□□□□ 0.8
Scn4aQ9ER60 Myl10-204ENSMUST00000197186 607 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Scn4aQ9ER60 Gm4971-201ENSMUST00000205991 1108 ntBASIC20.04■□□□□ 0.8
Scn4aQ9ER60 Gm3222-201ENSMUST00000071282 990 ntBASIC20.04■□□□□ 0.8
Scn4aQ9ER60 Gm16168-201ENSMUST00000161091 1359 ntTSL 3 BASIC20.04■□□□□ 0.8
Scn4aQ9ER60 Add2-203ENSMUST00000203279 1454 ntTSL 2 BASIC20.04■□□□□ 0.8
Scn4aQ9ER60 B3gntl1-201ENSMUST00000062654 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
Retrieved 100 of 76,532 protein–RNA pairs in 27.5 ms