Protein–RNA interactions for Protein: Q9CWT6

Ddx28, Probable ATP-dependent RNA helicase DDX28, mousemouse

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx28Q9CWT6 Spns1-203ENSMUST00000119846 2017 ntTSL 5 BASIC14.07□□□□□ -0.16
Ddx28Q9CWT6 Pitpnm1-202ENSMUST00000100022 4512 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Ddx28Q9CWT6 Cxcl16-201ENSMUST00000019064 2699 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Ddx28Q9CWT6 Lman2-201ENSMUST00000021940 4315 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Ddx28Q9CWT6 Ubb-201ENSMUST00000019649 1499 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Ddx28Q9CWT6 Vps72-201ENSMUST00000009102 1456 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Ddx28Q9CWT6 Slc44a2-210ENSMUST00000217461 3478 ntAPPRIS ALT1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Ddx28Q9CWT6 4930513N10Rik-203ENSMUST00000145562 2803 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Ddx28Q9CWT6 Slc43a1-201ENSMUST00000028469 2539 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
Ddx28Q9CWT6 Pdhb-201ENSMUST00000022268 1513 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Ddx28Q9CWT6 Zbtb33-202ENSMUST00000115142 2567 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Ddx28Q9CWT6 Loxl1-201ENSMUST00000061799 3297 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Ddx28Q9CWT6 Csnk1d-201ENSMUST00000018274 3675 ntAPPRIS P4 TSL 1 (best) BASIC14.06□□□□□ -0.16
Ddx28Q9CWT6 A330040F15Rik-202ENSMUST00000224046 1918 ntBASIC14.06□□□□□ -0.16
Ddx28Q9CWT6 Gm7669-201ENSMUST00000210184 1603 ntBASIC14.06□□□□□ -0.16
Ddx28Q9CWT6 Zfp612-202ENSMUST00000212754 4863 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Ddx28Q9CWT6 Cchcr1-201ENSMUST00000045956 2748 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
Ddx28Q9CWT6 Unc5a-202ENSMUST00000109994 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
Ddx28Q9CWT6 Gm12895-201ENSMUST00000122214 226 ntBASIC14.06□□□□□ -0.16
Ddx28Q9CWT6 Gm25745-201ENSMUST00000174945 133 ntBASIC14.06□□□□□ -0.16
Ddx28Q9CWT6 Jpx-202ENSMUST00000182447 712 ntTSL 3 BASIC14.06□□□□□ -0.16
Ddx28Q9CWT6 Gm27867-201ENSMUST00000184778 125 ntBASIC14.06□□□□□ -0.16
Ddx28Q9CWT6 Psmg3-201ENSMUST00000031531 883 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Ddx28Q9CWT6 Sirpa-203ENSMUST00000103202 3982 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
Ddx28Q9CWT6 Slc24a3-202ENSMUST00000110007 4048 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
Ddx28Q9CWT6 Gdf10-201ENSMUST00000168727 5210 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Ddx28Q9CWT6 Rnf11-201ENSMUST00000030284 4061 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Ddx28Q9CWT6 Riox2-201ENSMUST00000023407 2159 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Ddx28Q9CWT6 Ntrk2-209ENSMUST00000225950 2640 ntBASIC14.06□□□□□ -0.16
Ddx28Q9CWT6 Camta2-203ENSMUST00000108544 4632 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Ddx28Q9CWT6 Gnas-211ENSMUST00000109096 2465 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Ddx28Q9CWT6 Myo9b-201ENSMUST00000071935 7082 ntAPPRIS P3 TSL 5 BASIC14.05□□□□□ -0.16
Ddx28Q9CWT6 Zfp821-203ENSMUST00000212000 2081 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Ddx28Q9CWT6 Med20-201ENSMUST00000024778 2054 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Ddx28Q9CWT6 Prkag1-201ENSMUST00000168846 1638 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Ddx28Q9CWT6 Arhgap26-201ENSMUST00000097593 7898 ntAPPRIS P2 TSL 5 BASIC14.05□□□□□ -0.16
Ddx28Q9CWT6 Tmem30a-202ENSMUST00000120690 3627 ntAPPRIS ALT2 TSL 5 BASIC14.05□□□□□ -0.16
Ddx28Q9CWT6 Gm45003-201ENSMUST00000205875 2158 ntBASIC14.05□□□□□ -0.16
Ddx28Q9CWT6 Hmgn1-201ENSMUST00000050884 2174 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Ddx28Q9CWT6 Prnp-201ENSMUST00000091288 2184 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Ddx28Q9CWT6 Slc41a1-201ENSMUST00000086559 4697 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Ddx28Q9CWT6 Nat9-203ENSMUST00000103040 1204 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Ddx28Q9CWT6 Nat9-204ENSMUST00000103041 953 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
Ddx28Q9CWT6 Gmnn-202ENSMUST00000110382 963 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Ddx28Q9CWT6 Gm12497-201ENSMUST00000138778 237 ntBASIC14.05□□□□□ -0.16
Ddx28Q9CWT6 Washc3-203ENSMUST00000182183 838 ntAPPRIS ALT2 TSL 2 BASIC14.05□□□□□ -0.16
Ddx28Q9CWT6 Dnmt3a-ps1-201ENSMUST00000192011 1271 ntBASIC14.05□□□□□ -0.16
Ddx28Q9CWT6 Tecr-201ENSMUST00000019382 1158 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Ddx28Q9CWT6 AC171004.1-201ENSMUST00000221723 664 ntTSL 3 BASIC14.05□□□□□ -0.16
Ddx28Q9CWT6 Hbb-bt-201ENSMUST00000098192 703 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Ddx28Q9CWT6 Ldlrap1-201ENSMUST00000037828 6549 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Ddx28Q9CWT6 Cgnl1-203ENSMUST00000122065 4487 ntAPPRIS P2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Ddx28Q9CWT6 CT030684.3-201ENSMUST00000227308 2445 ntBASIC14.05□□□□□ -0.16
Ddx28Q9CWT6 Fbxl8-201ENSMUST00000036221 1901 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Ddx28Q9CWT6 Mis12-206ENSMUST00000164220 1416 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Ddx28Q9CWT6 Pqlc2-205ENSMUST00000172747 1405 ntAPPRIS P2 TSL 5 BASIC14.05□□□□□ -0.16
Ddx28Q9CWT6 Anxa2-201ENSMUST00000034756 1447 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Ddx28Q9CWT6 Sox11-201ENSMUST00000079063 8311 ntAPPRIS P1 BASIC14.05□□□□□ -0.16
Ddx28Q9CWT6 Scp2-201ENSMUST00000030340 2640 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Ddx28Q9CWT6 Gm11946-201ENSMUST00000123459 3941 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Ddx28Q9CWT6 Stard7-201ENSMUST00000110374 1530 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Ddx28Q9CWT6 H2-K1-201ENSMUST00000025181 1605 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
Ddx28Q9CWT6 Ccdc157-201ENSMUST00000093381 5015 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Ddx28Q9CWT6 Pex12-202ENSMUST00000108146 2389 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Ddx28Q9CWT6 Xpot-201ENSMUST00000039810 5992 ntTSL 5 BASIC14.04□□□□□ -0.16
Ddx28Q9CWT6 Frmd4b-203ENSMUST00000113355 4913 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Ddx28Q9CWT6 Phldb1-210ENSMUST00000134465 5244 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
Ddx28Q9CWT6 Thap3-202ENSMUST00000105665 832 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Ddx28Q9CWT6 Gm26871-202ENSMUST00000180774 695 ntTSL 2 BASIC14.04□□□□□ -0.16
Ddx28Q9CWT6 Mthfsl-204ENSMUST00000186863 725 ntTSL 2 BASIC14.04□□□□□ -0.16
Ddx28Q9CWT6 Hs3st2-202ENSMUST00000206880 1149 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Ddx28Q9CWT6 AL669916.2-201ENSMUST00000213219 358 ntTSL 2 BASIC14.04□□□□□ -0.16
Ddx28Q9CWT6 Gm9857-201ENSMUST00000050914 393 ntAPPRIS P1 BASIC14.04□□□□□ -0.16
Ddx28Q9CWT6 Ahnak-201ENSMUST00000092955 1046 ntAPPRIS ALT2 TSL 2 BASIC14.04□□□□□ -0.16
Ddx28Q9CWT6 Cdk2-201ENSMUST00000026415 2240 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Ddx28Q9CWT6 Safb-201ENSMUST00000095224 3106 ntAPPRIS P2 TSL 5 BASIC14.04□□□□□ -0.16
Ddx28Q9CWT6 Dgki-203ENSMUST00000101532 4596 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
Ddx28Q9CWT6 Gm45844-204ENSMUST00000209833 1524 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
Ddx28Q9CWT6 Axdnd1-204ENSMUST00000178036 3586 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
Ddx28Q9CWT6 Sesn1-201ENSMUST00000041438 2600 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
Ddx28Q9CWT6 Oxtr-201ENSMUST00000053306 4704 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Ddx28Q9CWT6 Cdr2l-201ENSMUST00000053288 3700 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Ddx28Q9CWT6 Ccbe1-202ENSMUST00000130300 1631 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Ddx28Q9CWT6 Mif4gd-203ENSMUST00000106507 1656 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Ddx28Q9CWT6 Tcp11-202ENSMUST00000043925 1746 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
Ddx28Q9CWT6 Rimkla-201ENSMUST00000049994 4097 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Ddx28Q9CWT6 Asf1b-201ENSMUST00000005607 1788 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Ddx28Q9CWT6 2810402E24Rik-201ENSMUST00000190699 3040 ntBASIC14.04□□□□□ -0.16
Ddx28Q9CWT6 Cyp2u1-201ENSMUST00000106337 4378 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Ddx28Q9CWT6 Camk2b-205ENSMUST00000093355 1973 ntTSL 5 BASIC14.03□□□□□ -0.16
Ddx28Q9CWT6 Zfp36l2-201ENSMUST00000060366 3530 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Ddx28Q9CWT6 Mbp-202ENSMUST00000062446 2186 ntAPPRIS P4 TSL 1 (best) BASIC14.03□□□□□ -0.16
Ddx28Q9CWT6 Eef2kmt-201ENSMUST00000064635 2170 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Ddx28Q9CWT6 Armcx1-202ENSMUST00000051256 2253 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Ddx28Q9CWT6 Vcan-201ENSMUST00000109543 2321 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Ddx28Q9CWT6 Denr-201ENSMUST00000023869 2339 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Ddx28Q9CWT6 Tsku-206ENSMUST00000179780 2404 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Ddx28Q9CWT6 Chodl-201ENSMUST00000023568 2535 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Ddx28Q9CWT6 Lgals8-202ENSMUST00000099821 2792 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Ddx28Q9CWT6 Spock2-201ENSMUST00000121820 5238 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Retrieved 100 of 76,532 protein–RNA pairs in 39.1 ms