Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Nup88-202ENSMUST00000108530 2389 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Brf1Q8CFK2 AI661453-201ENSMUST00000037701 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Brf1Q8CFK2 Mccc2-201ENSMUST00000022148 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Brf1Q8CFK2 Dok7-201ENSMUST00000050709 2498 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Brf1Q8CFK2 Slc3a2-202ENSMUST00000170157 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Brf1Q8CFK2 Aen-201ENSMUST00000107421 2007 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Brf1Q8CFK2 Dgki-203ENSMUST00000101532 4596 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
Brf1Q8CFK2 Trem2-202ENSMUST00000113237 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Brf1Q8CFK2 Gm16198-201ENSMUST00000118766 670 ntBASIC18.07■□□□□ 0.48
Brf1Q8CFK2 Chchd7-205ENSMUST00000120732 711 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Brf1Q8CFK2 Fau-202ENSMUST00000178310 571 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Brf1Q8CFK2 1810026B05Rik-205ENSMUST00000184855 409 ntTSL 3 BASIC18.07■□□□□ 0.48
Brf1Q8CFK2 Gm45747-201ENSMUST00000212203 999 ntBASIC18.07■□□□□ 0.48
Brf1Q8CFK2 Vsig2-206ENSMUST00000215957 851 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Brf1Q8CFK2 AC159295.1-201ENSMUST00000225326 940 ntBASIC18.07■□□□□ 0.48
Brf1Q8CFK2 Fmr1nb-201ENSMUST00000069731 799 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Brf1Q8CFK2 2510009E07Rik-201ENSMUST00000053336 5164 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Brf1Q8CFK2 Mmp14-201ENSMUST00000089688 2596 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Brf1Q8CFK2 Csrnp1-203ENSMUST00000214058 2241 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Brf1Q8CFK2 Gm9768-201ENSMUST00000206007 2861 ntBASIC18.07■□□□□ 0.48
Brf1Q8CFK2 Trappc12-203ENSMUST00000170994 2818 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Brf1Q8CFK2 Elavl3-201ENSMUST00000003501 5014 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Brf1Q8CFK2 Mrpl58-203ENSMUST00000106539 2522 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Brf1Q8CFK2 Rrnad1-206ENSMUST00000160074 1620 ntTSL 5 BASIC18.06■□□□□ 0.48
Brf1Q8CFK2 Trafd1-202ENSMUST00000120784 2425 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Brf1Q8CFK2 Epo-202ENSMUST00000111038 855 ntAPPRIS P3 TSL 5 BASIC18.06■□□□□ 0.48
Brf1Q8CFK2 Grip1os3-202ENSMUST00000146294 957 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Brf1Q8CFK2 Gm27002-201ENSMUST00000182789 620 ntTSL 2 BASIC18.06■□□□□ 0.48
Brf1Q8CFK2 AC174742.1-201ENSMUST00000218272 304 ntBASIC18.06■□□□□ 0.48
Brf1Q8CFK2 Thap2-203ENSMUST00000218989 527 ntBASIC18.06■□□□□ 0.48
Brf1Q8CFK2 Tspan18-201ENSMUST00000028646 1203 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Brf1Q8CFK2 Tbcc-201ENSMUST00000040434 1164 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
Brf1Q8CFK2 Acat3-201ENSMUST00000043923 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Brf1Q8CFK2 Rimkla-201ENSMUST00000049994 4097 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Brf1Q8CFK2 Bicc1-201ENSMUST00000014473 3231 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Brf1Q8CFK2 Prdm4-207ENSMUST00000220032 3962 ntTSL 5 BASIC18.06■□□□□ 0.48
Brf1Q8CFK2 Gata4-202ENSMUST00000118022 3374 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
Brf1Q8CFK2 Htr7-205ENSMUST00000166074 3079 ntTSL 5 BASIC18.06■□□□□ 0.48
Brf1Q8CFK2 Gm21009-201ENSMUST00000197169 1669 ntBASIC18.06■□□□□ 0.48
Brf1Q8CFK2 Camk2g-217ENSMUST00000226630 1937 ntBASIC18.06■□□□□ 0.48
Brf1Q8CFK2 Cdon-202ENSMUST00000119129 7503 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
Brf1Q8CFK2 Nipal3-201ENSMUST00000102549 5153 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
Brf1Q8CFK2 Uros-203ENSMUST00000106145 1644 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Brf1Q8CFK2 Orai3-203ENSMUST00000121504 2141 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Brf1Q8CFK2 Hgfac-201ENSMUST00000030985 2135 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Brf1Q8CFK2 Osbpl10-201ENSMUST00000046627 1872 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Brf1Q8CFK2 Traf3ip1-201ENSMUST00000047242 3474 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Brf1Q8CFK2 Fam160b1-201ENSMUST00000036407 5630 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Brf1Q8CFK2 Gm3373-202ENSMUST00000177556 1955 ntAPPRIS P5 TSL 5 BASIC18.05■□□□□ 0.48
Brf1Q8CFK2 Gm3500-201ENSMUST00000177986 1955 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
Brf1Q8CFK2 Aimp2-202ENSMUST00000100483 1073 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Brf1Q8CFK2 Dhdds-203ENSMUST00000105886 1015 ntTSL 5 BASIC18.05■□□□□ 0.48
Brf1Q8CFK2 1110004F10Rik-203ENSMUST00000106608 927 ntTSL 3 BASIC18.05■□□□□ 0.48
Brf1Q8CFK2 Nosip-202ENSMUST00000107829 972 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Brf1Q8CFK2 Dlk1-203ENSMUST00000109842 1129 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Brf1Q8CFK2 Cenpp-201ENSMUST00000021818 1144 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Brf1Q8CFK2 Pold4-201ENSMUST00000025773 910 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Brf1Q8CFK2 Aimp2-201ENSMUST00000031613 1185 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Brf1Q8CFK2 Gm5357-201ENSMUST00000212720 1924 ntBASIC18.05■□□□□ 0.48
Brf1Q8CFK2 Tigd5-201ENSMUST00000192937 4801 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
Brf1Q8CFK2 Krt14-201ENSMUST00000007272 1698 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Brf1Q8CFK2 Mapk8ip3-203ENSMUST00000115229 5603 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
Brf1Q8CFK2 Irf3-202ENSMUST00000107834 1429 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Brf1Q8CFK2 Gpam-201ENSMUST00000061856 3832 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Brf1Q8CFK2 Mdm1-202ENSMUST00000163238 2461 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Brf1Q8CFK2 Usp4-201ENSMUST00000035237 3662 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
Brf1Q8CFK2 Psmd4-203ENSMUST00000117355 1756 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Brf1Q8CFK2 Map3k12-207ENSMUST00000169377 4210 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Brf1Q8CFK2 Fam83g-202ENSMUST00000093019 4778 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Brf1Q8CFK2 Fbxl8-201ENSMUST00000036221 1901 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Brf1Q8CFK2 Ghdc-201ENSMUST00000017891 2462 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Brf1Q8CFK2 Mok-202ENSMUST00000070565 1693 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Brf1Q8CFK2 Fis1-202ENSMUST00000111094 948 ntTSL 2 BASIC18.04■□□□□ 0.48
Brf1Q8CFK2 Gm15467-201ENSMUST00000120582 445 ntBASIC18.04■□□□□ 0.48
Brf1Q8CFK2 Tpt1-205ENSMUST00000142061 996 ntTSL 5 BASIC18.04■□□□□ 0.48
Brf1Q8CFK2 Gm43397-201ENSMUST00000196422 481 ntTSL 3 BASIC18.04■□□□□ 0.48
Brf1Q8CFK2 Gm43514-201ENSMUST00000198852 424 ntBASIC18.04■□□□□ 0.48
Brf1Q8CFK2 Ndufs6-204ENSMUST00000223293 757 ntTSL 2 BASIC18.04■□□□□ 0.48
Brf1Q8CFK2 1700019N19Rik-201ENSMUST00000028299 970 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Brf1Q8CFK2 Map6-203ENSMUST00000122101 3233 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Brf1Q8CFK2 Arhgef1-218ENSMUST00000206508 3195 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Brf1Q8CFK2 Chac1-201ENSMUST00000028780 1637 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Brf1Q8CFK2 Kri1-201ENSMUST00000038671 2598 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Brf1Q8CFK2 Tmem241-202ENSMUST00000055447 2597 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Brf1Q8CFK2 Gpr37l1-201ENSMUST00000027682 2269 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Brf1Q8CFK2 Gm26578-201ENSMUST00000181702 4611 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Brf1Q8CFK2 1700029J07Rik-202ENSMUST00000098786 1340 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Brf1Q8CFK2 Adam23-201ENSMUST00000087374 6426 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
Brf1Q8CFK2 Arhgef2-223ENSMUST00000176804 3086 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
Brf1Q8CFK2 Faf1-201ENSMUST00000102724 4468 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Brf1Q8CFK2 Arhgap11a-204ENSMUST00000110949 4458 ntAPPRIS P2 TSL 5 BASIC18.03■□□□□ 0.48
Brf1Q8CFK2 Grin1os-201ENSMUST00000129723 2891 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Brf1Q8CFK2 Dnajc1-209ENSMUST00000166495 5497 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Brf1Q8CFK2 Cyb561a3-201ENSMUST00000168445 1474 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
Brf1Q8CFK2 Zdhhc18-201ENSMUST00000084238 4580 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
Brf1Q8CFK2 Gm14494-201ENSMUST00000118786 435 ntBASIC18.03■□□□□ 0.48
Brf1Q8CFK2 Gm15593-201ENSMUST00000122085 1008 ntBASIC18.03■□□□□ 0.48
Brf1Q8CFK2 Gm28308-201ENSMUST00000128102 752 ntAPPRIS P1 TSL 3 BASIC18.03■□□□□ 0.48
Brf1Q8CFK2 Ascl5-201ENSMUST00000180436 567 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
Brf1Q8CFK2 Gm44492-201ENSMUST00000197012 141 ntBASIC18.03■□□□□ 0.48
Retrieved 100 of 76,532 protein–RNA pairs in 48 ms