Protein–RNA interactions for Protein: Q8BY87

Usp47, Ubiquitin carboxyl-terminal hydrolase 47, mousemouse

Predictions only

Length 1,376 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp47Q8BY87 Gjb3-202ENSMUST00000106091 1623 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Usp47Q8BY87 AC174678.1-201ENSMUST00000228007 2749 ntBASIC21.07■□□□□ 0.96
Usp47Q8BY87 Edem1-201ENSMUST00000089162 5817 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Usp47Q8BY87 Gm7063-201ENSMUST00000186840 981 ntBASIC21.07■□□□□ 0.96
Usp47Q8BY87 Ighv8-7-201ENSMUST00000194349 297 ntBASIC21.07■□□□□ 0.96
Usp47Q8BY87 4933437G19Rik-201ENSMUST00000197910 1178 ntBASIC21.07■□□□□ 0.96
Usp47Q8BY87 1700128F08Rik-202ENSMUST00000213708 717 ntBASIC21.07■□□□□ 0.96
Usp47Q8BY87 Tmc8-203ENSMUST00000117781 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
Usp47Q8BY87 Fgf17-202ENSMUST00000227123 1336 ntBASIC21.07■□□□□ 0.96
Usp47Q8BY87 Selplg-201ENSMUST00000100874 1855 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Usp47Q8BY87 Chn1-203ENSMUST00000112024 4050 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Usp47Q8BY87 Chn1-210ENSMUST00000180045 4050 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Usp47Q8BY87 2810408A11Rik-202ENSMUST00000100969 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
Usp47Q8BY87 Prelid1-201ENSMUST00000021942 2644 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Usp47Q8BY87 Arhgef1-201ENSMUST00000047873 3212 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
Usp47Q8BY87 Rhd-201ENSMUST00000030627 1514 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Usp47Q8BY87 Farp2-202ENSMUST00000122402 2816 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Usp47Q8BY87 Jakmip3-201ENSMUST00000106111 1571 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
Usp47Q8BY87 Foxq1-201ENSMUST00000042118 4843 ntAPPRIS P1 BASIC21.06■□□□□ 0.96
Usp47Q8BY87 Anapc7-203ENSMUST00000122010 2950 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
Usp47Q8BY87 Eda-202ENSMUST00000113775 5088 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Usp47Q8BY87 Mrpl58-203ENSMUST00000106539 2522 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Usp47Q8BY87 Eif2ak3-201ENSMUST00000034093 4513 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Usp47Q8BY87 Gm9824-201ENSMUST00000178707 561 ntBASIC21.06■□□□□ 0.96
Usp47Q8BY87 Gm26771-201ENSMUST00000180472 1082 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Usp47Q8BY87 2310001H17Rik-206ENSMUST00000205051 676 ntTSL 3 BASIC21.06■□□□□ 0.96
Usp47Q8BY87 Plpp4-203ENSMUST00000205896 714 ntTSL 5 BASIC21.06■□□□□ 0.96
Usp47Q8BY87 AC158804.1-201ENSMUST00000219046 541 ntTSL 3 BASIC21.06■□□□□ 0.96
Usp47Q8BY87 Alkbh7-201ENSMUST00000002737 917 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Usp47Q8BY87 Lce1c-201ENSMUST00000047055 724 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Usp47Q8BY87 Tef-201ENSMUST00000023024 4079 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Usp47Q8BY87 Patz1-202ENSMUST00000093402 3173 ntTSL 2 BASIC21.06■□□□□ 0.96
Usp47Q8BY87 Abcf2-201ENSMUST00000030795 2569 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Usp47Q8BY87 Men1-203ENSMUST00000079327 2639 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
Usp47Q8BY87 P2ry2-206ENSMUST00000208340 2693 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Usp47Q8BY87 Adnp-202ENSMUST00000088001 4932 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Usp47Q8BY87 Trp53-206ENSMUST00000171247 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
Usp47Q8BY87 Gm39244-202ENSMUST00000210837 1857 ntTSL 5 BASIC21.05■□□□□ 0.96
Usp47Q8BY87 Rell1-204ENSMUST00000154169 3241 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Usp47Q8BY87 Tmem229a-201ENSMUST00000127247 5157 ntAPPRIS P1 BASIC21.05■□□□□ 0.96
Usp47Q8BY87 Impdh1-207ENSMUST00000162099 2580 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Usp47Q8BY87 Casp8-201ENSMUST00000027189 2585 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
Usp47Q8BY87 Galnt18-201ENSMUST00000049430 2575 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Usp47Q8BY87 D630044L22Rik-201ENSMUST00000181174 2964 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Usp47Q8BY87 Abhd11-202ENSMUST00000111216 972 ntTSL 3 BASIC21.05■□□□□ 0.96
Usp47Q8BY87 Gm15693-201ENSMUST00000120470 637 ntBASIC21.05■□□□□ 0.96
Usp47Q8BY87 Gm15199-201ENSMUST00000129933 542 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Usp47Q8BY87 Gm20646-202ENSMUST00000199521 660 ntTSL 3 BASIC21.05■□□□□ 0.96
Usp47Q8BY87 Gm34964-201ENSMUST00000207398 417 ntTSL 5 BASIC21.05■□□□□ 0.96
Usp47Q8BY87 Gdpd3-201ENSMUST00000032944 1148 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Usp47Q8BY87 Stk33-203ENSMUST00000121378 1304 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Usp47Q8BY87 Mtus2-204ENSMUST00000110514 1532 ntTSL 5 BASIC21.05■□□□□ 0.96
Usp47Q8BY87 Gm20743-201ENSMUST00000191735 1576 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Usp47Q8BY87 4930556H04Rik-201ENSMUST00000222451 1675 ntBASIC21.05■□□□□ 0.96
Usp47Q8BY87 Prss41-204ENSMUST00000151797 1743 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Usp47Q8BY87 Gapvd1-203ENSMUST00000113099 5758 ntAPPRIS ALT2 TSL 5 BASIC21.05■□□□□ 0.96
Usp47Q8BY87 Hdgfl1-201ENSMUST00000055915 1993 ntAPPRIS P1 BASIC21.05■□□□□ 0.96
Usp47Q8BY87 Phospho2-202ENSMUST00000112266 2194 ntAPPRIS P1 TSL 3 BASIC21.05■□□□□ 0.96
Usp47Q8BY87 Nkd2-202ENSMUST00000118096 2801 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
Usp47Q8BY87 Unc93b1-203ENSMUST00000162708 2266 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
Usp47Q8BY87 Arhgef25-201ENSMUST00000019611 2218 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Usp47Q8BY87 Hars-201ENSMUST00000001416 1987 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Usp47Q8BY87 Ceacam16-201ENSMUST00000014830 1635 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Usp47Q8BY87 Dlgap4-204ENSMUST00000109566 1595 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
Usp47Q8BY87 Hnrnpa2b1-210ENSMUST00000204188 1518 ntTSL 5 BASIC21.04■□□□□ 0.96
Usp47Q8BY87 Thap6-204ENSMUST00000193925 1337 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Usp47Q8BY87 Ppp1r1a-201ENSMUST00000023133 1306 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Usp47Q8BY87 Metrnl-202ENSMUST00000106089 1101 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
Usp47Q8BY87 Sept1-201ENSMUST00000106313 1285 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
Usp47Q8BY87 Gm15920-201ENSMUST00000118998 402 ntBASIC21.04■□□□□ 0.96
Usp47Q8BY87 Nfya-203ENSMUST00000159063 1255 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Usp47Q8BY87 Gm10044-204ENSMUST00000170177 659 ntTSL 3 BASIC21.04■□□□□ 0.96
Usp47Q8BY87 Gm22175-201ENSMUST00000175007 78 ntBASIC21.04■□□□□ 0.96
Usp47Q8BY87 Gm45098-201ENSMUST00000207179 657 ntBASIC21.04■□□□□ 0.96
Usp47Q8BY87 Gm32351-201ENSMUST00000220503 438 ntTSL 5 BASIC21.04■□□□□ 0.96
Usp47Q8BY87 Rtl8c-201ENSMUST00000063384 401 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
Usp47Q8BY87 Rtn1-202ENSMUST00000078505 3629 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Usp47Q8BY87 Ppp1cb-201ENSMUST00000015100 5962 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Usp47Q8BY87 Rnf138-202ENSMUST00000072847 3002 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Usp47Q8BY87 Cbfa2t3-202ENSMUST00000064674 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
Usp47Q8BY87 Ctage5-213ENSMUST00000176464 4434 ntTSL 5 BASIC21.04■□□□□ 0.96
Usp47Q8BY87 Ube2d3-210ENSMUST00000197539 2515 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
Usp47Q8BY87 Rnaseh2a-203ENSMUST00000109738 2044 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Usp47Q8BY87 Plekha7-210ENSMUST00000182834 5257 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Usp47Q8BY87 Pbk-201ENSMUST00000022612 1720 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Usp47Q8BY87 Snai3-201ENSMUST00000006762 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Usp47Q8BY87 Dact1-201ENSMUST00000061273 3650 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Usp47Q8BY87 Stk40-201ENSMUST00000094761 3492 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Usp47Q8BY87 Capg-203ENSMUST00000114072 1388 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Usp47Q8BY87 Cdk12-203ENSMUST00000107539 5912 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
Usp47Q8BY87 Eif2a-201ENSMUST00000029387 2299 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Usp47Q8BY87 Auts2-212ENSMUST00000178555 309 ntBASIC21.03■□□□□ 0.96
Usp47Q8BY87 Arf5-201ENSMUST00000020717 1116 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Usp47Q8BY87 Lin37-201ENSMUST00000043975 998 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Usp47Q8BY87 Trpc1-204ENSMUST00000189137 4559 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
Usp47Q8BY87 Thop1-201ENSMUST00000005057 2832 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Usp47Q8BY87 Gm10584-201ENSMUST00000207036 2628 ntBASIC21.03■□□□□ 0.96
Usp47Q8BY87 Cdcp2-202ENSMUST00000221740 1623 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
Usp47Q8BY87 Cyp2t4-201ENSMUST00000108385 1599 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
Usp47Q8BY87 Sp2-203ENSMUST00000107624 3055 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.96
Retrieved 100 of 76,532 protein–RNA pairs in 10.4 ms