Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 Hnrnpa3-202ENSMUST00000111961 1734 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
Trim40Q3UWA4 Stk33-202ENSMUST00000106745 2410 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Trim40Q3UWA4 Agap1-201ENSMUST00000027521 11921 ntAPPRIS P4 TSL 1 (best) BASIC14.08□□□□□ -0.16
Trim40Q3UWA4 Gssos2-201ENSMUST00000130859 727 ntTSL 3 BASIC14.08□□□□□ -0.16
Trim40Q3UWA4 Gm7507-201ENSMUST00000183053 1008 ntBASIC14.08□□□□□ -0.16
Trim40Q3UWA4 Gm37280-201ENSMUST00000194583 375 ntTSL 3 BASIC14.08□□□□□ -0.16
Trim40Q3UWA4 Gm10252-201ENSMUST00000209541 832 ntBASIC14.08□□□□□ -0.16
Trim40Q3UWA4 Uchl3-201ENSMUST00000002289 903 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Trim40Q3UWA4 Tbpl1-201ENSMUST00000095794 1195 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Trim40Q3UWA4 Sall2-202ENSMUST00000135523 4773 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
Trim40Q3UWA4 Pcyox1l-201ENSMUST00000025472 2017 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Trim40Q3UWA4 Sntb2-203ENSMUST00000212524 9945 ntAPPRIS P2 TSL 1 (best) BASIC14.08□□□□□ -0.16
Trim40Q3UWA4 Ercc6l2-202ENSMUST00000021926 1592 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Trim40Q3UWA4 Lysmd3-202ENSMUST00000224300 4250 ntAPPRIS P1 BASIC14.08□□□□□ -0.16
Trim40Q3UWA4 Synm-201ENSMUST00000051389 6953 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
Trim40Q3UWA4 Rsbn1l-201ENSMUST00000036489 5550 ntAPPRIS P2 TSL 5 BASIC14.08□□□□□ -0.16
Trim40Q3UWA4 Pomgnt1-202ENSMUST00000106496 2613 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Trim40Q3UWA4 Trappc9-203ENSMUST00000168191 3127 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
Trim40Q3UWA4 Grm7-201ENSMUST00000071076 3127 ntAPPRIS ALT1 TSL 5 BASIC14.08□□□□□ -0.16
Trim40Q3UWA4 Pde7b-205ENSMUST00000169404 1697 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
Trim40Q3UWA4 Tmem254b-201ENSMUST00000022418 1447 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Trim40Q3UWA4 Etv3-202ENSMUST00000119109 5309 ntAPPRIS P2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Trim40Q3UWA4 Os9-201ENSMUST00000080975 2458 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
Trim40Q3UWA4 Rasal3-207ENSMUST00000137458 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Trim40Q3UWA4 Rxra-202ENSMUST00000100251 1952 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Trim40Q3UWA4 Igsf21-201ENSMUST00000039331 1979 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Trim40Q3UWA4 Dmpk-201ENSMUST00000032568 2761 ntAPPRIS P3 TSL 5 BASIC14.07□□□□□ -0.16
Trim40Q3UWA4 Mme-206ENSMUST00000194150 3345 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Trim40Q3UWA4 2410002F23Rik-218ENSMUST00000188382 2301 ntAPPRIS P2 TSL 5 BASIC14.07□□□□□ -0.16
Trim40Q3UWA4 Ly9-201ENSMUST00000004827 2098 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Trim40Q3UWA4 Sirt5-206ENSMUST00000221481 1548 ntTSL 5 BASIC14.07□□□□□ -0.16
Trim40Q3UWA4 Rad23a-202ENSMUST00000109761 1842 ntAPPRIS ALT1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Trim40Q3UWA4 Hmgn2-204ENSMUST00000105893 973 ntTSL 3 BASIC14.07□□□□□ -0.16
Trim40Q3UWA4 Pdxdc1-203ENSMUST00000115803 1268 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
Trim40Q3UWA4 Gm7556-201ENSMUST00000201178 1084 ntBASIC14.07□□□□□ -0.16
Trim40Q3UWA4 Hsph1-211ENSMUST00000202361 3802 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Trim40Q3UWA4 Gm10358-201ENSMUST00000212864 1250 ntAPPRIS P1 BASIC14.07□□□□□ -0.16
Trim40Q3UWA4 D230030E09Rik-201ENSMUST00000222459 884 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Trim40Q3UWA4 Gmnn-201ENSMUST00000006898 1127 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Trim40Q3UWA4 Gm9987-201ENSMUST00000069768 567 ntBASIC14.07□□□□□ -0.16
Trim40Q3UWA4 Vps26b-201ENSMUST00000034470 3575 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Trim40Q3UWA4 Myo1c-204ENSMUST00000108431 4718 ntAPPRIS P2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Trim40Q3UWA4 Ddx4-202ENSMUST00000099166 3012 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Trim40Q3UWA4 Il2rb-202ENSMUST00000163494 1894 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Trim40Q3UWA4 Cdt1-201ENSMUST00000006760 2189 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Trim40Q3UWA4 Fzd7-201ENSMUST00000114246 4532 ntAPPRIS P1 BASIC14.07□□□□□ -0.16
Trim40Q3UWA4 Ankrd33b-204ENSMUST00000123325 7466 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Trim40Q3UWA4 Hnrnpa2b1-204ENSMUST00000203220 1638 ntAPPRIS P2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Trim40Q3UWA4 Eif4g3-215ENSMUST00000203828 5289 ntTSL 5 BASIC14.07□□□□□ -0.16
Trim40Q3UWA4 4930402H24Rik-202ENSMUST00000110243 1984 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Trim40Q3UWA4 Ptprn2-201ENSMUST00000070733 3201 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Trim40Q3UWA4 Gckr-201ENSMUST00000072228 2014 ntAPPRIS P2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Trim40Q3UWA4 Zfp689-202ENSMUST00000106299 1417 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Trim40Q3UWA4 Map7d1-201ENSMUST00000061143 3351 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
Trim40Q3UWA4 Gck-202ENSMUST00000109822 1786 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Trim40Q3UWA4 Gtdc1-202ENSMUST00000100127 2422 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Trim40Q3UWA4 Ckb-201ENSMUST00000001304 1472 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Trim40Q3UWA4 Necab3-201ENSMUST00000000895 1829 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
Trim40Q3UWA4 Trim32-201ENSMUST00000050850 3194 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Trim40Q3UWA4 Hnrnpr-204ENSMUST00000131671 2543 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Trim40Q3UWA4 Commd7-201ENSMUST00000071852 3210 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Trim40Q3UWA4 Pard3b-202ENSMUST00000075374 8392 ntAPPRIS P2 TSL 5 BASIC14.06□□□□□ -0.16
Trim40Q3UWA4 Rnf121-202ENSMUST00000096639 2249 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Trim40Q3UWA4 Ubtf-209ENSMUST00000173870 2936 ntAPPRIS P3 TSL 5 BASIC14.06□□□□□ -0.16
Trim40Q3UWA4 Safb2-201ENSMUST00000075510 3277 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Trim40Q3UWA4 Elmsan1-202ENSMUST00000110294 7156 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
Trim40Q3UWA4 Pctp-201ENSMUST00000020864 2723 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Trim40Q3UWA4 F420014N23Rik-202ENSMUST00000219079 659 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Trim40Q3UWA4 Kiss1r-202ENSMUST00000219745 979 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Trim40Q3UWA4 AC125350.1-201ENSMUST00000225115 903 ntBASIC14.06□□□□□ -0.16
Trim40Q3UWA4 AC159093.1-201ENSMUST00000227779 380 ntBASIC14.06□□□□□ -0.16
Trim40Q3UWA4 Ppp1r27-201ENSMUST00000026121 771 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Trim40Q3UWA4 Pspn-201ENSMUST00000002740 474 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Trim40Q3UWA4 Spsb2-202ENSMUST00000052727 1219 ntAPPRIS P1 TSL 3 BASIC14.06□□□□□ -0.16
Trim40Q3UWA4 Fam174a-202ENSMUST00000186780 3460 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Trim40Q3UWA4 Ubxn11-201ENSMUST00000070246 2014 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
Trim40Q3UWA4 Scn4b-201ENSMUST00000060125 4982 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Trim40Q3UWA4 Gm14029-201ENSMUST00000151051 1348 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Trim40Q3UWA4 Hes6-201ENSMUST00000086851 1335 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Trim40Q3UWA4 Slc8a3-201ENSMUST00000064594 4379 ntAPPRIS ALT1 TSL 5 BASIC14.06□□□□□ -0.16
Trim40Q3UWA4 Catip-201ENSMUST00000097697 2101 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
Trim40Q3UWA4 Ralyl-206ENSMUST00000193117 2933 ntAPPRIS P1 TSL 2 BASIC14.06□□□□□ -0.16
Trim40Q3UWA4 Nr2f1-205ENSMUST00000150498 2588 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Trim40Q3UWA4 Acin1-201ENSMUST00000022793 4735 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
Trim40Q3UWA4 Lmx1b-201ENSMUST00000041730 4790 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Trim40Q3UWA4 Sftpb-204ENSMUST00000183018 1490 ntAPPRIS P2 TSL 5 BASIC14.06□□□□□ -0.16
Trim40Q3UWA4 Gm10457-201ENSMUST00000222619 1906 ntTSL 2 BASIC14.05□□□□□ -0.16
Trim40Q3UWA4 Olfr1156-203ENSMUST00000216726 3271 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
Trim40Q3UWA4 Emb-201ENSMUST00000022242 2923 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Trim40Q3UWA4 Cdk6-201ENSMUST00000042410 2470 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Trim40Q3UWA4 Phtf2-201ENSMUST00000118174 4840 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Trim40Q3UWA4 Ifnar2-202ENSMUST00000089042 2580 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Trim40Q3UWA4 Tex13b-201ENSMUST00000044179 2116 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Trim40Q3UWA4 Zfyve27-207ENSMUST00000169536 5611 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
Trim40Q3UWA4 Rbm22-201ENSMUST00000025506 2210 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Trim40Q3UWA4 Pdk2-201ENSMUST00000038431 2246 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Trim40Q3UWA4 Hnrnph3-203ENSMUST00000119814 682 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Trim40Q3UWA4 Ccl27a-219ENSMUST00000173865 657 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Trim40Q3UWA4 Gm38282-201ENSMUST00000192751 695 ntTSL 5 BASIC14.05□□□□□ -0.16
Trim40Q3UWA4 Npcd-201ENSMUST00000023060 1162 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Retrieved 100 of 76,532 protein–RNA pairs in 45.8 ms