Protein–RNA interactions for Protein: Q05722

Col9a1, Collagen alpha-1(IX) chain, mousemouse

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col9a1Q05722 Gm11682-201ENSMUST00000144689 516 ntTSL 3 BASIC14.63□□□□□ -0.07
Col9a1Q05722 4930456L15Rik-201ENSMUST00000145577 1185 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Col9a1Q05722 2010001A14Rik-203ENSMUST00000152790 714 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Col9a1Q05722 Gm43758-201ENSMUST00000199500 367 ntBASIC14.63□□□□□ -0.07
Col9a1Q05722 Gm7446-201ENSMUST00000221035 1240 ntBASIC14.63□□□□□ -0.07
Col9a1Q05722 Gm45930-201ENSMUST00000221330 292 ntBASIC14.63□□□□□ -0.07
Col9a1Q05722 AC110817.1-201ENSMUST00000225706 605 ntBASIC14.63□□□□□ -0.07
Col9a1Q05722 Prss41-201ENSMUST00000024926 1128 ntAPPRIS P2 TSL 1 (best) BASIC14.63□□□□□ -0.07
Col9a1Q05722 Tmem210-201ENSMUST00000028340 516 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Col9a1Q05722 Dnajc17-201ENSMUST00000038439 1008 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Col9a1Q05722 Upk3bl-201ENSMUST00000006303 1045 ntAPPRIS P2 TSL 1 (best) BASIC14.63□□□□□ -0.07
Col9a1Q05722 Hirip3-201ENSMUST00000037248 2766 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Col9a1Q05722 Lrrc57-202ENSMUST00000102497 1962 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Col9a1Q05722 Gm8096-201ENSMUST00000209921 1591 ntBASIC14.63□□□□□ -0.07
Col9a1Q05722 Arid1a-205ENSMUST00000145664 8187 ntAPPRIS ALT2 TSL 2 BASIC14.63□□□□□ -0.07
Col9a1Q05722 Tmem132e-201ENSMUST00000054245 4386 ntAPPRIS P2 TSL 1 (best) BASIC14.63□□□□□ -0.07
Col9a1Q05722 Rbm12b2-202ENSMUST00000095143 3147 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Col9a1Q05722 Slit3-201ENSMUST00000069837 5228 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Col9a1Q05722 Pak4-202ENSMUST00000108283 2899 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Col9a1Q05722 AC164565.1-201ENSMUST00000217520 1484 ntBASIC14.63□□□□□ -0.07
Col9a1Q05722 Dvl2-201ENSMUST00000019362 2968 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Col9a1Q05722 Rab34-203ENSMUST00000108322 1685 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Col9a1Q05722 9230020A06Rik-203ENSMUST00000214621 1682 ntTSL 5 BASIC14.62□□□□□ -0.07
Col9a1Q05722 Tbcel-201ENSMUST00000066148 5000 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Col9a1Q05722 Spsb4-201ENSMUST00000055433 2720 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Col9a1Q05722 Btbd2-201ENSMUST00000003434 3026 ntAPPRIS P2 TSL 5 BASIC14.62□□□□□ -0.07
Col9a1Q05722 Man2a2-201ENSMUST00000098346 6554 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Col9a1Q05722 Bud23-203ENSMUST00000111205 1169 ntAPPRIS ALT2 TSL 3 BASIC14.62□□□□□ -0.07
Col9a1Q05722 Selenot-ps-201ENSMUST00000119098 593 ntBASIC14.62□□□□□ -0.07
Col9a1Q05722 Gm12201-201ENSMUST00000120657 1234 ntBASIC14.62□□□□□ -0.07
Col9a1Q05722 Drap1-210ENSMUST00000148219 727 ntTSL 3 BASIC14.62□□□□□ -0.07
Col9a1Q05722 Gm11210-201ENSMUST00000150203 422 ntTSL 3 BASIC14.62□□□□□ -0.07
Col9a1Q05722 Ly6g6e-203ENSMUST00000172678 750 ntAPPRIS P2 TSL 3 BASIC14.62□□□□□ -0.07
Col9a1Q05722 Cdk3-ps-202ENSMUST00000174177 915 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
Col9a1Q05722 Pid1-204ENSMUST00000176559 1564 ntTSL 2 BASIC14.62□□□□□ -0.07
Col9a1Q05722 Gm5354-201ENSMUST00000182417 973 ntBASIC14.62□□□□□ -0.07
Col9a1Q05722 Gm27514-201ENSMUST00000183692 110 ntBASIC14.62□□□□□ -0.07
Col9a1Q05722 Mir7654-201ENSMUST00000185082 70 ntBASIC14.62□□□□□ -0.07
Col9a1Q05722 Ggnbp2-201ENSMUST00000018547 2478 ntTSL 5 BASIC14.62□□□□□ -0.07
Col9a1Q05722 Gm4131-201ENSMUST00000186010 1264 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
Col9a1Q05722 Gm28722-201ENSMUST00000187630 1036 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Col9a1Q05722 Gm28923-201ENSMUST00000187755 322 ntBASIC14.62□□□□□ -0.07
Col9a1Q05722 Gm38139-201ENSMUST00000195806 704 ntTSL 2 BASIC14.62□□□□□ -0.07
Col9a1Q05722 Gm43118-201ENSMUST00000199149 775 ntBASIC14.62□□□□□ -0.07
Col9a1Q05722 AC158987.1-201ENSMUST00000214586 961 ntTSL 5 BASIC14.62□□□□□ -0.07
Col9a1Q05722 Phxr2-201ENSMUST00000060761 1159 ntAPPRIS P1 BASIC14.62□□□□□ -0.07
Col9a1Q05722 Rhox2a-201ENSMUST00000063340 795 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Col9a1Q05722 Gm6091-201ENSMUST00000098307 165 ntBASIC14.62□□□□□ -0.07
Col9a1Q05722 Rec114-201ENSMUST00000098674 883 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Col9a1Q05722 Frmd5-203ENSMUST00000121219 2262 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Col9a1Q05722 Ppp1r3f-201ENSMUST00000115742 3066 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
Col9a1Q05722 Nptx2-201ENSMUST00000071782 2536 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Col9a1Q05722 St3gal2-201ENSMUST00000034197 4396 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Col9a1Q05722 Crebbp-201ENSMUST00000023165 10820 ntAPPRIS P2 TSL 1 (best) BASIC14.61□□□□□ -0.07
Col9a1Q05722 Slfnl1-201ENSMUST00000062990 1762 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Col9a1Q05722 Cd27-202ENSMUST00000112281 832 ntTSL 3 BASIC14.61□□□□□ -0.07
Col9a1Q05722 Gm11814-201ENSMUST00000119515 929 ntBASIC14.61□□□□□ -0.07
Col9a1Q05722 Gm14126-201ENSMUST00000122345 395 ntBASIC14.61□□□□□ -0.07
Col9a1Q05722 AC102542.1-201ENSMUST00000225204 1138 ntBASIC14.61□□□□□ -0.07
Col9a1Q05722 Tcf21-201ENSMUST00000049930 1267 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Col9a1Q05722 Prr23a2-201ENSMUST00000071302 881 ntAPPRIS P1 BASIC14.61□□□□□ -0.07
Col9a1Q05722 Coro6-203ENSMUST00000079770 1298 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Col9a1Q05722 Sarm1-202ENSMUST00000108287 4868 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Col9a1Q05722 Aire-216ENSMUST00000156417 1627 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Col9a1Q05722 Hnrnpa2b1-201ENSMUST00000069949 1647 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Col9a1Q05722 Asph-204ENSMUST00000084915 2884 ntTSL 5 BASIC14.61□□□□□ -0.07
Col9a1Q05722 Pkp4-202ENSMUST00000102754 4614 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
Col9a1Q05722 Enpp1-202ENSMUST00000105520 6777 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
Col9a1Q05722 Cyp4x1os-201ENSMUST00000153951 2003 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Col9a1Q05722 Lias-202ENSMUST00000122026 1668 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Col9a1Q05722 Rab7-203ENSMUST00000113597 1859 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Col9a1Q05722 Gm37811-201ENSMUST00000192416 2601 ntBASIC14.61□□□□□ -0.07
Col9a1Q05722 Spag16-201ENSMUST00000065425 2126 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col9a1Q05722 Rpf1-203ENSMUST00000199079 1978 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Col9a1Q05722 Hsd3b3-203ENSMUST00000107018 1443 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Col9a1Q05722 Nfya-206ENSMUST00000160319 1407 ntTSL 5 BASIC14.6□□□□□ -0.07
Col9a1Q05722 Gm8839-201ENSMUST00000121279 1645 ntBASIC14.6□□□□□ -0.07
Col9a1Q05722 Tlk2-201ENSMUST00000015107 3212 ntAPPRIS P3 TSL 5 BASIC14.6□□□□□ -0.07
Col9a1Q05722 Zfp157-203ENSMUST00000110912 886 ntTSL 3 BASIC14.6□□□□□ -0.07
Col9a1Q05722 Gm12384-201ENSMUST00000119228 919 ntBASIC14.6□□□□□ -0.07
Col9a1Q05722 Esp36-201ENSMUST00000172814 1117 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col9a1Q05722 Esp36-202ENSMUST00000177882 1117 ntAPPRIS P2 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col9a1Q05722 Txnl4b-202ENSMUST00000178445 830 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col9a1Q05722 Gm29649-201ENSMUST00000185649 419 ntBASIC14.6□□□□□ -0.07
Col9a1Q05722 Gm29127-201ENSMUST00000188304 517 ntBASIC14.6□□□□□ -0.07
Col9a1Q05722 Gm43947-201ENSMUST00000203019 959 ntBASIC14.6□□□□□ -0.07
Col9a1Q05722 Gm44968-201ENSMUST00000207652 1171 ntTSL 5 BASIC14.6□□□□□ -0.07
Col9a1Q05722 Olfr54-201ENSMUST00000072152 942 ntAPPRIS P1 BASIC14.6□□□□□ -0.07
Col9a1Q05722 Olfr1375-201ENSMUST00000073543 942 ntAPPRIS P1 BASIC14.6□□□□□ -0.07
Col9a1Q05722 Cma2-201ENSMUST00000089555 947 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col9a1Q05722 Polr2g-201ENSMUST00000096261 868 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col9a1Q05722 Aqp8-201ENSMUST00000033023 1487 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col9a1Q05722 Gpr18-201ENSMUST00000055475 1498 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col9a1Q05722 Ush1c-208ENSMUST00000177212 1696 ntAPPRIS ALT2 TSL 5 BASIC14.6□□□□□ -0.07
Col9a1Q05722 Eefsec-201ENSMUST00000165242 2679 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col9a1Q05722 Rnf169-201ENSMUST00000080817 7147 ntAPPRIS P1 TSL 5 BASIC14.6□□□□□ -0.07
Col9a1Q05722 Nrl-201ENSMUST00000062232 2504 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col9a1Q05722 Iqsec2-207ENSMUST00000168786 5993 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col9a1Q05722 Pdlim7-206ENSMUST00000131306 1915 ntTSL 2 BASIC14.6□□□□□ -0.07
Col9a1Q05722 R3hcc1-201ENSMUST00000118374 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
Retrieved 100 of 76,532 protein–RNA pairs in 57.2 ms