Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Rhpn2-201ENSMUST00000032705 3508 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Col8a1Q00780 Miip-206ENSMUST00000172710 1769 ntAPPRIS P2 TSL 5 BASIC12.76□□□□□ -0.37
Col8a1Q00780 P2rx4-201ENSMUST00000031429 2702 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Col8a1Q00780 Sphk1-206ENSMUST00000106388 1891 ntAPPRIS ALT2 TSL 5 BASIC12.76□□□□□ -0.37
Col8a1Q00780 Tfap2c-201ENSMUST00000030391 2838 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Col8a1Q00780 Pak4-202ENSMUST00000108283 2899 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Col8a1Q00780 Cgn-202ENSMUST00000107273 5016 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
Col8a1Q00780 Spock3-204ENSMUST00000119068 3201 ntAPPRIS P3 TSL 5 BASIC12.76□□□□□ -0.37
Col8a1Q00780 Cspp1-203ENSMUST00000118263 2162 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Col8a1Q00780 Agtr1a-201ENSMUST00000066412 2199 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Col8a1Q00780 Elf2-201ENSMUST00000062009 3353 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Col8a1Q00780 Tfeb-204ENSMUST00000113288 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Col8a1Q00780 Rundc3b-201ENSMUST00000047485 3677 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
Col8a1Q00780 Trappc10-201ENSMUST00000000384 5047 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Col8a1Q00780 Ngf-202ENSMUST00000106925 1187 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Col8a1Q00780 Slc31a2-203ENSMUST00000107468 743 ntAPPRIS ALT1 TSL 5 BASIC12.76□□□□□ -0.37
Col8a1Q00780 Nosip-202ENSMUST00000107829 972 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Col8a1Q00780 Rgs19-203ENSMUST00000108771 1110 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Col8a1Q00780 Rgs19-205ENSMUST00000108776 1216 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Col8a1Q00780 Rgs20-203ENSMUST00000119256 883 ntAPPRIS ALT2 TSL 3 BASIC12.76□□□□□ -0.37
Col8a1Q00780 Gm11543-201ENSMUST00000120758 370 ntBASIC12.76□□□□□ -0.37
Col8a1Q00780 A530058N18Rik-202ENSMUST00000134129 411 ntTSL 3 BASIC12.76□□□□□ -0.37
Col8a1Q00780 Gstt4-202ENSMUST00000160211 964 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Col8a1Q00780 Emp3-202ENSMUST00000164119 784 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Col8a1Q00780 Gm7286-201ENSMUST00000182691 1007 ntBASIC12.76□□□□□ -0.37
Col8a1Q00780 Gm45059-201ENSMUST00000205558 1077 ntBASIC12.76□□□□□ -0.37
Col8a1Q00780 Vmn2r-ps89-201ENSMUST00000209195 1010 ntBASIC12.76□□□□□ -0.37
Col8a1Q00780 Cradd-202ENSMUST00000217809 1115 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Col8a1Q00780 AC154239.3-201ENSMUST00000226933 674 ntBASIC12.76□□□□□ -0.37
Col8a1Q00780 Armc12-201ENSMUST00000025060 1083 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Col8a1Q00780 Olfr750-201ENSMUST00000048478 1132 ntAPPRIS P1 BASIC12.76□□□□□ -0.37
Col8a1Q00780 Cited1-201ENSMUST00000050551 901 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Col8a1Q00780 Fthl17c-201ENSMUST00000075792 850 ntAPPRIS P1 BASIC12.76□□□□□ -0.37
Col8a1Q00780 Kit-204ENSMUST00000144270 5241 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Col8a1Q00780 Egfl7-212ENSMUST00000166920 1391 ntAPPRIS P4 TSL 1 (best) BASIC12.76□□□□□ -0.37
Col8a1Q00780 Gch1-201ENSMUST00000089959 2775 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Col8a1Q00780 Stk11-202ENSMUST00000105370 1474 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Col8a1Q00780 Trmu-201ENSMUST00000023019 1526 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Col8a1Q00780 Ttc13-202ENSMUST00000117624 3096 ntTSL 5 BASIC12.76□□□□□ -0.37
Col8a1Q00780 Anxa3-201ENSMUST00000031447 1595 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Col8a1Q00780 Hmga1b-201ENSMUST00000105046 1626 ntAPPRIS P1 BASIC12.76□□□□□ -0.37
Col8a1Q00780 Ube2j2-201ENSMUST00000024056 3483 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Col8a1Q00780 Zfp862-ps-203ENSMUST00000203848 1776 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Col8a1Q00780 Gnb3-201ENSMUST00000024206 1846 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Col8a1Q00780 Patz1-205ENSMUST00000110043 3702 ntAPPRIS P1 TSL 5 BASIC12.76□□□□□ -0.37
Col8a1Q00780 Serinc2-203ENSMUST00000122374 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Col8a1Q00780 Plekhb1-207ENSMUST00000116287 1911 ntAPPRIS ALT1 TSL 3 BASIC12.76□□□□□ -0.37
Col8a1Q00780 Gm128-201ENSMUST00000090815 1959 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Col8a1Q00780 Mis18bp1-208ENSMUST00000222244 2053 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Col8a1Q00780 Itm2c-201ENSMUST00000027425 2230 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Col8a1Q00780 Slc16a3-202ENSMUST00000100130 2386 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Col8a1Q00780 Fubp1-205ENSMUST00000196695 2374 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Col8a1Q00780 Atg5-201ENSMUST00000039286 2352 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Col8a1Q00780 9530068E07Rik-201ENSMUST00000036952 2467 ntAPPRIS P2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Col8a1Q00780 Gigyf1-201ENSMUST00000031727 5440 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Col8a1Q00780 Fubp3-202ENSMUST00000113482 3268 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Col8a1Q00780 Foxo3-203ENSMUST00000105502 6848 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Col8a1Q00780 Rfx5-207ENSMUST00000137088 4333 ntAPPRIS P1 TSL 5 BASIC12.75□□□□□ -0.37
Col8a1Q00780 Tbc1d8-201ENSMUST00000054462 4451 ntAPPRIS P2 TSL 1 (best) BASIC12.75□□□□□ -0.37
Col8a1Q00780 Pi4kb-202ENSMUST00000107251 2895 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Col8a1Q00780 Gm13015-201ENSMUST00000118674 204 ntBASIC12.75□□□□□ -0.37
Col8a1Q00780 Akirin1-ps-201ENSMUST00000119676 458 ntBASIC12.75□□□□□ -0.37
Col8a1Q00780 Csnk1e-202ENSMUST00000120859 1391 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Col8a1Q00780 Cd209f-202ENSMUST00000138439 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
Col8a1Q00780 Gm15384-201ENSMUST00000138832 486 ntTSL 5 BASIC12.75□□□□□ -0.37
Col8a1Q00780 Cd209f-203ENSMUST00000145007 1186 ntAPPRIS P2 TSL 1 (best) BASIC12.75□□□□□ -0.37
Col8a1Q00780 Zpr1-206ENSMUST00000156440 2984 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Col8a1Q00780 Mettl26-204ENSMUST00000169085 324 ntTSL 5 BASIC12.75□□□□□ -0.37
Col8a1Q00780 Gm10499-201ENSMUST00000174094 934 ntBASIC12.75□□□□□ -0.37
Col8a1Q00780 Gsg1l2-202ENSMUST00000181566 1158 ntAPPRIS P1 TSL 5 BASIC12.75□□□□□ -0.37
Col8a1Q00780 Gm5914-202ENSMUST00000182863 375 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Col8a1Q00780 Il6st-206ENSMUST00000183886 3004 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Col8a1Q00780 Gm8602-201ENSMUST00000184045 607 ntBASIC12.75□□□□□ -0.37
Col8a1Q00780 Gm27838-201ENSMUST00000184829 128 ntBASIC12.75□□□□□ -0.37
Col8a1Q00780 Gm28630-201ENSMUST00000187806 498 ntBASIC12.75□□□□□ -0.37
Col8a1Q00780 Sctr-202ENSMUST00000189037 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
Col8a1Q00780 Gm31728-201ENSMUST00000192164 435 ntTSL 3 BASIC12.75□□□□□ -0.37
Col8a1Q00780 Gm45605-201ENSMUST00000210265 4269 ntBASIC12.75□□□□□ -0.37
Col8a1Q00780 Anapc2-201ENSMUST00000028341 3004 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Col8a1Q00780 Rwdd2a-201ENSMUST00000034988 1355 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Col8a1Q00780 Tmem88-201ENSMUST00000050140 1582 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Col8a1Q00780 Olfr324-201ENSMUST00000054683 1122 ntAPPRIS P2 BASIC12.75□□□□□ -0.37
Col8a1Q00780 Gm6180-201ENSMUST00000065243 498 ntBASIC12.75□□□□□ -0.37
Col8a1Q00780 4933415F23Rik-201ENSMUST00000073179 1781 ntAPPRIS P1 BASIC12.75□□□□□ -0.37
Col8a1Q00780 Klhl40-201ENSMUST00000098272 2370 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Col8a1Q00780 Kcnq4-201ENSMUST00000030376 3919 ntAPPRIS P1 TSL 5 BASIC12.75□□□□□ -0.37
Col8a1Q00780 Fbxl18-201ENSMUST00000035985 2831 ntAPPRIS P2 TSL 1 (best) BASIC12.75□□□□□ -0.37
Col8a1Q00780 Aptx-202ENSMUST00000068125 5383 ntAPPRIS P4 TSL 1 (best) BASIC12.75□□□□□ -0.37
Col8a1Q00780 Pomgnt2-206ENSMUST00000216669 2504 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Col8a1Q00780 Large2-215ENSMUST00000176810 2477 ntAPPRIS ALT2 TSL 5 BASIC12.74□□□□□ -0.37
Col8a1Q00780 Map2k5-201ENSMUST00000034920 2310 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Col8a1Q00780 Arhgap11a-204ENSMUST00000110949 4458 ntAPPRIS P2 TSL 5 BASIC12.74□□□□□ -0.37
Col8a1Q00780 Insr-201ENSMUST00000091291 9355 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Col8a1Q00780 Fam84b-201ENSMUST00000100635 5565 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Col8a1Q00780 Stra8-201ENSMUST00000031876 1803 ntAPPRIS P2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Col8a1Q00780 Trank1-201ENSMUST00000078626 10520 ntAPPRIS P1 TSL 5 BASIC12.74□□□□□ -0.37
Col8a1Q00780 Cend1-202ENSMUST00000124444 1733 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Col8a1Q00780 Stard7-202ENSMUST00000110375 3116 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Col8a1Q00780 Gm16867-201ENSMUST00000179116 3084 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Col8a1Q00780 Ndufs2-202ENSMUST00000111318 1545 ntTSL 5 BASIC12.74□□□□□ -0.37
Retrieved 100 of 76,532 protein–RNA pairs in 30.8 ms