Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Dnajc9-201ENSMUST00000022345 1631 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Rfx1P48377 Snx19-201ENSMUST00000164099 5762 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Rfx1P48377 Pcsk4-201ENSMUST00000020340 2539 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Rfx1P48377 Alpl-201ENSMUST00000030551 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Rfx1P48377 Ulk1-211ENSMUST00000200299 3581 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
Rfx1P48377 Zbtb20-203ENSMUST00000114691 2891 ntAPPRIS ALT1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Rfx1P48377 Actg1-204ENSMUST00000106215 1827 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Rfx1P48377 Asb10-203ENSMUST00000119657 1536 ntTSL 5 BASIC17.93■□□□□ 0.46
Rfx1P48377 Gm34419-201ENSMUST00000211383 1387 ntTSL 5 BASIC17.93■□□□□ 0.46
Rfx1P48377 Spg20-204ENSMUST00000118118 3981 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
Rfx1P48377 Ralyl-206ENSMUST00000193117 2933 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
Rfx1P48377 Epha1-203ENSMUST00000204357 2948 ntTSL 5 BASIC17.93■□□□□ 0.46
Rfx1P48377 Abi3-201ENSMUST00000059026 4006 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Rfx1P48377 Tmem184a-201ENSMUST00000044002 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
Rfx1P48377 Grm7-201ENSMUST00000071076 3127 ntAPPRIS ALT1 TSL 5 BASIC17.93■□□□□ 0.46
Rfx1P48377 Ints14-201ENSMUST00000037504 2837 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Rfx1P48377 Mtfp1-201ENSMUST00000004868 1411 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Rfx1P48377 Syne3-201ENSMUST00000067005 5097 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
Rfx1P48377 Gm4459-201ENSMUST00000118750 468 ntBASIC17.93■□□□□ 0.46
Rfx1P48377 Gm23634-201ENSMUST00000175071 91 ntBASIC17.93■□□□□ 0.46
Rfx1P48377 Dnmt3a-ps1-201ENSMUST00000192011 1271 ntBASIC17.93■□□□□ 0.46
Rfx1P48377 Tsc22d4-203ENSMUST00000100540 2730 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Rfx1P48377 Kcnc1-201ENSMUST00000025202 7760 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Rfx1P48377 Gm43205-201ENSMUST00000198622 1968 ntBASIC17.93■□□□□ 0.46
Rfx1P48377 Dbndd2-201ENSMUST00000017878 1338 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
Rfx1P48377 Nupr1l-201ENSMUST00000178355 1827 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
Rfx1P48377 Rbbp8nl-201ENSMUST00000038529 2319 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Rfx1P48377 Gm10010-201ENSMUST00000071101 2346 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Rfx1P48377 AC167013.2-201ENSMUST00000228520 2684 ntBASIC17.93■□□□□ 0.46
Rfx1P48377 Vwa2-201ENSMUST00000026068 4049 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Rfx1P48377 Proser2-202ENSMUST00000114942 4398 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Rfx1P48377 Aen-201ENSMUST00000107421 2007 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
Rfx1P48377 Casc3-204ENSMUST00000169695 3741 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Rfx1P48377 Dmtn-202ENSMUST00000022695 4080 ntTSL 5 BASIC17.93■□□□□ 0.46
Rfx1P48377 Pelp1-201ENSMUST00000019065 3435 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Rfx1P48377 Ube2f-204ENSMUST00000178627 1363 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Rfx1P48377 Nodal-201ENSMUST00000049339 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Rfx1P48377 Pomgnt1-202ENSMUST00000106496 2613 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Rfx1P48377 Atp6v1c2-201ENSMUST00000020884 1569 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Rfx1P48377 Adamts2-201ENSMUST00000040523 7266 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Rfx1P48377 Gins2-201ENSMUST00000034278 3900 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Rfx1P48377 Riox2-201ENSMUST00000023407 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Rfx1P48377 Gm29501-201ENSMUST00000186133 530 ntTSL 5 BASIC17.92■□□□□ 0.46
Rfx1P48377 AC122024.2-201ENSMUST00000220086 871 ntBASIC17.92■□□□□ 0.46
Rfx1P48377 Ak6-201ENSMUST00000022135 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Rfx1P48377 AC171004.1-201ENSMUST00000221723 664 ntTSL 3 BASIC17.92■□□□□ 0.46
Rfx1P48377 A930016O22Rik-201ENSMUST00000047020 1214 ntTSL 2 BASIC17.92■□□□□ 0.46
Rfx1P48377 Hist1h2af-201ENSMUST00000073261 399 ntAPPRIS P1 BASIC17.92■□□□□ 0.46
Rfx1P48377 Ccdc103-201ENSMUST00000021307 1841 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Rfx1P48377 Trank1-201ENSMUST00000078626 10520 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
Rfx1P48377 Map3k9-202ENSMUST00000222322 3303 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
Rfx1P48377 Usp42-201ENSMUST00000053287 5151 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
Rfx1P48377 CT010456.1-201ENSMUST00000222465 1688 ntTSL 5 BASIC17.92■□□□□ 0.46
Rfx1P48377 Bcs1l-201ENSMUST00000027358 1890 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Rfx1P48377 Cyp2w1-201ENSMUST00000031521 1512 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
Rfx1P48377 Prmt5-201ENSMUST00000023873 2691 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Rfx1P48377 Emb-201ENSMUST00000022242 2923 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Rfx1P48377 Gm11946-201ENSMUST00000123459 3941 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Rfx1P48377 Arl6-202ENSMUST00000099646 1554 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Rfx1P48377 Unc93b1-204ENSMUST00000165711 1991 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
Rfx1P48377 Rara-203ENSMUST00000107474 2380 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
Rfx1P48377 Mtcl1-211ENSMUST00000177034 5441 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
Rfx1P48377 Ncln-202ENSMUST00000118498 2841 ntAPPRIS ALT1 TSL 5 BASIC17.91■□□□□ 0.46
Rfx1P48377 Slc35c2-204ENSMUST00000109300 2008 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Rfx1P48377 Mfrp-202ENSMUST00000161381 4254 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
Rfx1P48377 Pcdh20-201ENSMUST00000061628 5241 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Rfx1P48377 Tm4sf4-201ENSMUST00000029377 1496 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Rfx1P48377 Thap3-202ENSMUST00000105665 832 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
Rfx1P48377 Gm15165-201ENSMUST00000118140 502 ntBASIC17.91■□□□□ 0.46
Rfx1P48377 Gm15890-201ENSMUST00000161024 770 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Rfx1P48377 Mrps12-204ENSMUST00000171183 883 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
Rfx1P48377 Gm6728-201ENSMUST00000178117 1065 ntBASIC17.91■□□□□ 0.46
Rfx1P48377 Gm27742-201ENSMUST00000184667 60 ntBASIC17.91■□□□□ 0.46
Rfx1P48377 Smim22-208ENSMUST00000185147 399 ntAPPRIS ALT2 TSL 2 BASIC17.91■□□□□ 0.46
Rfx1P48377 A430033K04Rik-201ENSMUST00000032590 1109 ntTSL 5 BASIC17.91■□□□□ 0.46
Rfx1P48377 Rpl36al-201ENSMUST00000054544 526 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Rfx1P48377 2310039H08Rik-201ENSMUST00000071430 773 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
Rfx1P48377 Synm-204ENSMUST00000208231 4457 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
Rfx1P48377 Kcnk6-201ENSMUST00000085818 4084 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Rfx1P48377 Gatm-201ENSMUST00000028624 2389 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Rfx1P48377 Cfap69-205ENSMUST00000135252 2188 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
Rfx1P48377 Aarsd1-201ENSMUST00000070395 1516 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Rfx1P48377 Serp1-201ENSMUST00000029385 4611 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Rfx1P48377 Asap1-216ENSMUST00000177083 4415 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
Rfx1P48377 Kif1c-203ENSMUST00000102554 6684 ntAPPRIS P2 TSL 5 BASIC17.91■□□□□ 0.46
Rfx1P48377 Fbxo27-202ENSMUST00000108280 2031 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Rfx1P48377 Doc2b-201ENSMUST00000021209 4361 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Rfx1P48377 Gm10710-201ENSMUST00000047876 3971 ntBASIC17.9■□□□□ 0.46
Rfx1P48377 Oxtr-201ENSMUST00000053306 4704 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Rfx1P48377 Jakmip1-212ENSMUST00000174629 1941 ntTSL 5 BASIC17.9■□□□□ 0.46
Rfx1P48377 Phtf2-201ENSMUST00000118174 4840 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Rfx1P48377 Mast3-201ENSMUST00000166004 5305 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
Rfx1P48377 Efs-201ENSMUST00000022813 2705 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Rfx1P48377 Tnfrsf11a-201ENSMUST00000027559 5027 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Rfx1P48377 Tmem9b-202ENSMUST00000118571 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
Rfx1P48377 Srpx-202ENSMUST00000115543 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
Rfx1P48377 Gm8344-201ENSMUST00000119813 856 ntBASIC17.9■□□□□ 0.46
Rfx1P48377 Tsc22d1-208ENSMUST00000142683 797 ntTSL 3 BASIC17.9■□□□□ 0.46
Rfx1P48377 Tsfm-207ENSMUST00000152054 655 ntTSL 3 BASIC17.9■□□□□ 0.46
Rfx1P48377 Vsig2-201ENSMUST00000002008 1166 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Retrieved 100 of 76,532 protein–RNA pairs in 32.4 ms