Protein–RNA interactions for Protein: Q9EPU0

Upf1, Regulator of nonsense transcripts 1, mousemouse

Known RBP Predictions only

Length 1,124 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf1Q9EPU0 Dcaf8-206ENSMUST00000192704 2859 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Upf1Q9EPU0 Pacs2-207ENSMUST00000223502 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
Upf1Q9EPU0 Sirt5-207ENSMUST00000221515 1793 ntTSL 5 BASIC16.84■□□□□ 0.29
Upf1Q9EPU0 Cpne6-207ENSMUST00000171643 2016 ntAPPRIS P3 TSL 5 BASIC16.84■□□□□ 0.29
Upf1Q9EPU0 Zkscan2-203ENSMUST00000128217 2218 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Upf1Q9EPU0 Gm21949-201ENSMUST00000182006 2369 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
Upf1Q9EPU0 Myh7b-201ENSMUST00000092995 6163 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
Upf1Q9EPU0 Sbk3-201ENSMUST00000133272 1086 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
Upf1Q9EPU0 Gm2383-201ENSMUST00000181461 807 ntBASIC16.84■□□□□ 0.29
Upf1Q9EPU0 Hmgcll1-207ENSMUST00000183979 1136 ntTSL 5 BASIC16.84■□□□□ 0.29
Upf1Q9EPU0 Cma2-201ENSMUST00000089555 947 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Upf1Q9EPU0 Ccnc-203ENSMUST00000108240 1406 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Upf1Q9EPU0 Mcu-202ENSMUST00000020312 2872 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
Upf1Q9EPU0 Trim3-201ENSMUST00000057525 3016 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Upf1Q9EPU0 Fnbp1-204ENSMUST00000100208 1859 ntTSL 5 BASIC16.84■□□□□ 0.29
Upf1Q9EPU0 Tmod2-208ENSMUST00000215614 1921 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Upf1Q9EPU0 Rnf13-205ENSMUST00000198214 2027 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Upf1Q9EPU0 Haus8-201ENSMUST00000035960 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
Upf1Q9EPU0 Eif2d-202ENSMUST00000068805 2009 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
Upf1Q9EPU0 Cyb5d2-201ENSMUST00000079681 2393 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Upf1Q9EPU0 Fam46a-202ENSMUST00000187711 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.29
Upf1Q9EPU0 Rhobtb3-201ENSMUST00000022078 4980 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
Upf1Q9EPU0 4933409G03Rik-201ENSMUST00000102713 1263 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.28
Upf1Q9EPU0 Tmem40-202ENSMUST00000112946 1554 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
Upf1Q9EPU0 Fbxw2-205ENSMUST00000113078 1872 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Upf1Q9EPU0 Gm14263-201ENSMUST00000117955 746 ntBASIC16.83■□□□□ 0.28
Upf1Q9EPU0 Isg20-202ENSMUST00000118867 697 ntAPPRIS P1 TSL 3 BASIC16.83■□□□□ 0.28
Upf1Q9EPU0 Sgce-207ENSMUST00000126151 1522 ntTSL 5 BASIC16.83■□□□□ 0.28
Upf1Q9EPU0 4933427I22Rik-201ENSMUST00000138672 393 ntTSL 3 BASIC16.83■□□□□ 0.28
Upf1Q9EPU0 Gm13075-202ENSMUST00000149247 1621 ntTSL 5 BASIC16.83■□□□□ 0.28
Upf1Q9EPU0 Gm12349-201ENSMUST00000153030 657 ntTSL 3 BASIC16.83■□□□□ 0.28
Upf1Q9EPU0 Acp5-203ENSMUST00000165735 1376 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Upf1Q9EPU0 Taf6l-206ENSMUST00000176610 2203 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Upf1Q9EPU0 Gm29152-201ENSMUST00000189284 325 ntTSL 5 BASIC16.83■□□□□ 0.28
Upf1Q9EPU0 Gm37259-201ENSMUST00000193903 849 ntBASIC16.83■□□□□ 0.28
Upf1Q9EPU0 Rps4l-202ENSMUST00000204242 789 ntBASIC16.83■□□□□ 0.28
Upf1Q9EPU0 Efcab10-201ENSMUST00000020878 673 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Upf1Q9EPU0 Ccdc159-204ENSMUST00000216710 1126 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
Upf1Q9EPU0 Dmtn-207ENSMUST00000228001 2437 ntBASIC16.83■□□□□ 0.28
Upf1Q9EPU0 Prelid3a-201ENSMUST00000025411 2167 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Upf1Q9EPU0 Yif1a-201ENSMUST00000025811 1493 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Upf1Q9EPU0 Cd2bp2-201ENSMUST00000035771 1309 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Upf1Q9EPU0 Tmem127-201ENSMUST00000035871 4811 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Upf1Q9EPU0 Zfp384-202ENSMUST00000054553 2451 ntTSL 5 BASIC16.83■□□□□ 0.28
Upf1Q9EPU0 Phgdh-201ENSMUST00000065793 1893 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Upf1Q9EPU0 Hs6st1-201ENSMUST00000088174 3719 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Upf1Q9EPU0 Mkrn3-201ENSMUST00000094340 2547 ntAPPRIS P1 BASIC16.83■□□□□ 0.28
Upf1Q9EPU0 Atp6v0a2-201ENSMUST00000037865 5345 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Upf1Q9EPU0 Brpf1-202ENSMUST00000113119 4826 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
Upf1Q9EPU0 Klhl2-201ENSMUST00000034017 3412 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.28
Upf1Q9EPU0 Camkk2-211ENSMUST00000200109 2751 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
Upf1Q9EPU0 Gm45774-201ENSMUST00000211992 2665 ntBASIC16.83■□□□□ 0.28
Upf1Q9EPU0 Sctr-201ENSMUST00000072886 2012 ntAPPRIS P3 TSL 2 BASIC16.82■□□□□ 0.28
Upf1Q9EPU0 Rhpn1-201ENSMUST00000023244 1932 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
Upf1Q9EPU0 Cntln-201ENSMUST00000047023 5528 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
Upf1Q9EPU0 Camk2d-228ENSMUST00000200171 5396 ntTSL 5 BASIC16.82■□□□□ 0.28
Upf1Q9EPU0 Pex11g-202ENSMUST00000111081 666 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Upf1Q9EPU0 Mrpl2-203ENSMUST00000113430 991 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
Upf1Q9EPU0 Wsb2-ps-201ENSMUST00000117937 1217 ntBASIC16.82■□□□□ 0.28
Upf1Q9EPU0 Gm12749-201ENSMUST00000122138 1159 ntBASIC16.82■□□□□ 0.28
Upf1Q9EPU0 Zfp125-202ENSMUST00000144811 704 ntTSL 5 BASIC16.82■□□□□ 0.28
Upf1Q9EPU0 Gm16124-201ENSMUST00000146938 516 ntTSL 2 BASIC16.82■□□□□ 0.28
Upf1Q9EPU0 2010001A14Rik-203ENSMUST00000152790 714 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Upf1Q9EPU0 Dpy30-202ENSMUST00000164832 799 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Upf1Q9EPU0 AC153872.1-201ENSMUST00000199539 128 ntBASIC16.82■□□□□ 0.28
Upf1Q9EPU0 Gm15411-202ENSMUST00000201913 668 ntTSL 3 BASIC16.82■□□□□ 0.28
Upf1Q9EPU0 Pomc-202ENSMUST00000218089 977 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Upf1Q9EPU0 Ormdl2-204ENSMUST00000219524 724 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
Upf1Q9EPU0 Cts7-204ENSMUST00000225321 1257 ntBASIC16.82■□□□□ 0.28
Upf1Q9EPU0 Psma7-201ENSMUST00000029082 914 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Upf1Q9EPU0 Rhox2a-201ENSMUST00000063340 795 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Upf1Q9EPU0 Mtus2-202ENSMUST00000085554 1009 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Upf1Q9EPU0 Zfp746-203ENSMUST00000203609 3648 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
Upf1Q9EPU0 Rhbdd3-202ENSMUST00000101610 2333 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Upf1Q9EPU0 Sh2b3-201ENSMUST00000040308 2530 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
Upf1Q9EPU0 Chit1-201ENSMUST00000086475 1688 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Upf1Q9EPU0 Man2a2-201ENSMUST00000098346 6554 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Upf1Q9EPU0 Cyp2d10-201ENSMUST00000072776 1647 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Upf1Q9EPU0 Mag-201ENSMUST00000040548 2419 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Upf1Q9EPU0 Klhdc10-201ENSMUST00000068240 3951 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Upf1Q9EPU0 Zbtb45-201ENSMUST00000051390 2171 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Upf1Q9EPU0 Mink1-201ENSMUST00000072237 4994 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
Upf1Q9EPU0 Necap2-201ENSMUST00000030760 1906 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Upf1Q9EPU0 2610306M01Rik-201ENSMUST00000185414 1042 ntBASIC16.81■□□□□ 0.28
Upf1Q9EPU0 Gm42627-201ENSMUST00000197347 224 ntBASIC16.81■□□□□ 0.28
Upf1Q9EPU0 AC133598.1-201ENSMUST00000224327 660 ntBASIC16.81■□□□□ 0.28
Upf1Q9EPU0 Oxt-201ENSMUST00000028764 537 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Upf1Q9EPU0 S1pr5-201ENSMUST00000122088 2500 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
Upf1Q9EPU0 Gm16863-201ENSMUST00000181476 2431 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Upf1Q9EPU0 Ptgfrn-201ENSMUST00000102694 5902 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Upf1Q9EPU0 Ttyh3-202ENSMUST00000197452 4576 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Upf1Q9EPU0 Cep57-208ENSMUST00000147115 2262 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Upf1Q9EPU0 Gm14634-201ENSMUST00000139163 1662 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Upf1Q9EPU0 Rnf128-201ENSMUST00000113026 2750 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Upf1Q9EPU0 Ntng1-205ENSMUST00000106575 1620 ntAPPRIS ALT1 TSL 5 BASIC16.81■□□□□ 0.28
Upf1Q9EPU0 Ntng1-202ENSMUST00000072596 1620 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Upf1Q9EPU0 Auh-202ENSMUST00000110031 3235 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Upf1Q9EPU0 Cyp2d11-201ENSMUST00000170255 1590 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
Upf1Q9EPU0 Zbtb25-205ENSMUST00000176509 1591 ntTSL 2 BASIC16.81■□□□□ 0.28
Upf1Q9EPU0 Pcdh7-201ENSMUST00000068110 5611 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
Retrieved 100 of 76,532 protein–RNA pairs in 49.3 ms