Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Cyb5r1-201ENSMUST00000027726 1837 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Brf1Q8CFK2 Akirin1-201ENSMUST00000102636 3052 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Brf1Q8CFK2 Cyb5r3-201ENSMUST00000018186 2422 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Brf1Q8CFK2 Rbm7-202ENSMUST00000213276 2629 ntTSL 2 BASIC18.11■□□□□ 0.49
Brf1Q8CFK2 March4-201ENSMUST00000047786 4553 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Brf1Q8CFK2 Sema3b-202ENSMUST00000102529 2875 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Brf1Q8CFK2 Atp11b-201ENSMUST00000029257 4868 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Brf1Q8CFK2 Cdk16-201ENSMUST00000033380 3120 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Brf1Q8CFK2 Fam84b-201ENSMUST00000100635 5565 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Brf1Q8CFK2 Tmem217-201ENSMUST00000114683 904 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Brf1Q8CFK2 Gm5177-201ENSMUST00000183092 997 ntBASIC18.11■□□□□ 0.49
Brf1Q8CFK2 Gm44596-201ENSMUST00000204223 647 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
Brf1Q8CFK2 Gm44945-201ENSMUST00000206764 1187 ntBASIC18.11■□□□□ 0.49
Brf1Q8CFK2 Pard6a-202ENSMUST00000098444 1273 ntTSL 2 BASIC18.11■□□□□ 0.49
Brf1Q8CFK2 Mis18a-201ENSMUST00000099554 1333 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Brf1Q8CFK2 Sphk1-211ENSMUST00000141798 1532 ntAPPRIS P4 TSL 1 (best) BASIC18.11■□□□□ 0.49
Brf1Q8CFK2 Tbx3-202ENSMUST00000079719 4982 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Brf1Q8CFK2 Tmem82-201ENSMUST00000053263 1671 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Brf1Q8CFK2 2210011K15Rik-201ENSMUST00000190690 1741 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Brf1Q8CFK2 Tmem255a-203ENSMUST00000089056 1745 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Brf1Q8CFK2 Acox1-201ENSMUST00000066587 3987 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
Brf1Q8CFK2 Xpo1-202ENSMUST00000102869 6004 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Brf1Q8CFK2 Pcdha7-201ENSMUST00000192631 5337 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Brf1Q8CFK2 Top3b-201ENSMUST00000023465 3073 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Brf1Q8CFK2 Abcf2-201ENSMUST00000030795 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Brf1Q8CFK2 Adarb1-202ENSMUST00000098374 6584 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Brf1Q8CFK2 Prss41-204ENSMUST00000151797 1743 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Brf1Q8CFK2 2310011J03Rik-201ENSMUST00000020341 1649 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Brf1Q8CFK2 Gm13344-201ENSMUST00000137714 1557 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Brf1Q8CFK2 Ren1-201ENSMUST00000094556 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Brf1Q8CFK2 Mtus2-204ENSMUST00000110514 1532 ntTSL 5 BASIC18.1■□□□□ 0.49
Brf1Q8CFK2 Arl11-201ENSMUST00000055159 1482 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Brf1Q8CFK2 Inip-202ENSMUST00000107526 1438 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Brf1Q8CFK2 1500011B03Rik-202ENSMUST00000112160 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Brf1Q8CFK2 Phb2-201ENSMUST00000004375 1318 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
Brf1Q8CFK2 Tmem254c-202ENSMUST00000100819 1211 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Brf1Q8CFK2 Dnajc24-201ENSMUST00000102555 1197 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Brf1Q8CFK2 Gm11779-201ENSMUST00000118541 368 ntBASIC18.1■□□□□ 0.49
Brf1Q8CFK2 Slc39a1-ps-201ENSMUST00000120862 969 ntBASIC18.1■□□□□ 0.49
Brf1Q8CFK2 Sardhos-201ENSMUST00000170435 265 ntTSL 3 BASIC18.1■□□□□ 0.49
Brf1Q8CFK2 Mir7036b-201ENSMUST00000184791 63 ntBASIC18.1■□□□□ 0.49
Brf1Q8CFK2 Cmtm3-204ENSMUST00000212081 850 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
Brf1Q8CFK2 Mrpl20-201ENSMUST00000030942 764 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Brf1Q8CFK2 St8sia1-201ENSMUST00000032421 8991 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Brf1Q8CFK2 Ccdc13-202ENSMUST00000135986 2640 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
Brf1Q8CFK2 Rbm15-201ENSMUST00000061772 4343 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Brf1Q8CFK2 Rab23-201ENSMUST00000088287 4322 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Brf1Q8CFK2 Il11ra1-202ENSMUST00000108040 1837 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
Brf1Q8CFK2 Nabp1-201ENSMUST00000027279 2838 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Brf1Q8CFK2 Adnp-201ENSMUST00000057793 4917 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
Brf1Q8CFK2 Parp16-205ENSMUST00000216702 1643 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Brf1Q8CFK2 Ttyh1-203ENSMUST00000119661 2512 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Brf1Q8CFK2 L2hgdh-201ENSMUST00000021370 3340 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Brf1Q8CFK2 Pttg1ip-201ENSMUST00000009435 2294 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
Brf1Q8CFK2 Derl1-201ENSMUST00000022993 3175 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Brf1Q8CFK2 Pptc7-202ENSMUST00000119015 2233 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
Brf1Q8CFK2 Tbc1d1-203ENSMUST00000119756 4760 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
Brf1Q8CFK2 Vps25-203ENSMUST00000100414 1220 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Brf1Q8CFK2 Gm16156-201ENSMUST00000141168 713 ntTSL 3 BASIC18.09■□□□□ 0.49
Brf1Q8CFK2 AC090659.1-201ENSMUST00000224334 768 ntBASIC18.09■□□□□ 0.49
Brf1Q8CFK2 Cox7a2l-201ENSMUST00000025095 1078 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Brf1Q8CFK2 BC031181-201ENSMUST00000040284 1047 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Brf1Q8CFK2 Lmna-203ENSMUST00000120377 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
Brf1Q8CFK2 Hars-201ENSMUST00000001416 1987 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Brf1Q8CFK2 Cux2-201ENSMUST00000086317 5113 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Brf1Q8CFK2 Ankrd27-202ENSMUST00000186245 1926 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Brf1Q8CFK2 Slc2a6-202ENSMUST00000102890 1887 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Brf1Q8CFK2 Scyl1-201ENSMUST00000025890 2637 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Brf1Q8CFK2 Ralgds-203ENSMUST00000113893 3683 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
Brf1Q8CFK2 Apba3-211ENSMUST00000220297 2268 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
Brf1Q8CFK2 Chtf8-202ENSMUST00000175940 2890 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Brf1Q8CFK2 Lrrc56-201ENSMUST00000047093 2197 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.49
Brf1Q8CFK2 Arhgef18-201ENSMUST00000004684 5271 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Brf1Q8CFK2 Mterf4-202ENSMUST00000112942 1525 ntTSL 2 BASIC18.08■□□□□ 0.49
Brf1Q8CFK2 Rhd-201ENSMUST00000030627 1514 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Brf1Q8CFK2 Trp53rkb-203ENSMUST00000151826 4426 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Brf1Q8CFK2 Nfya-206ENSMUST00000160319 1407 ntTSL 5 BASIC18.08■□□□□ 0.49
Brf1Q8CFK2 N6amt1-202ENSMUST00000118115 1951 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
Brf1Q8CFK2 Cdadc1-204ENSMUST00000171683 1892 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
Brf1Q8CFK2 Sumo3-202ENSMUST00000099538 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
Brf1Q8CFK2 Ppp4r4-201ENSMUST00000021631 3964 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.49
Brf1Q8CFK2 Wnk1-202ENSMUST00000060043 10575 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
Brf1Q8CFK2 Cd164l2-201ENSMUST00000105910 986 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Brf1Q8CFK2 Dnajc8-206ENSMUST00000105940 772 ntTSL 5 BASIC18.08■□□□□ 0.48
Brf1Q8CFK2 Higd1b-202ENSMUST00000107072 497 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.48
Brf1Q8CFK2 Higd1b-203ENSMUST00000107073 530 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
Brf1Q8CFK2 Zfp74-203ENSMUST00000108211 1278 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
Brf1Q8CFK2 Gm15758-201ENSMUST00000161681 695 ntTSL 5 BASIC18.08■□□□□ 0.48
Brf1Q8CFK2 Hoxb8-203ENSMUST00000168043 1141 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.48
Brf1Q8CFK2 Hddc3-206ENSMUST00000206074 565 ntTSL 2 BASIC18.08■□□□□ 0.48
Brf1Q8CFK2 Gm36584-201ENSMUST00000209046 708 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
Brf1Q8CFK2 Higd1b-201ENSMUST00000021302 735 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Brf1Q8CFK2 Tfeb-201ENSMUST00000024786 2296 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
Brf1Q8CFK2 Map6d1-201ENSMUST00000040880 3273 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Brf1Q8CFK2 Gm29208-203ENSMUST00000213687 2219 ntTSL 5 BASIC18.08■□□□□ 0.48
Brf1Q8CFK2 Zfp574-201ENSMUST00000053410 3145 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Brf1Q8CFK2 Zfp90-201ENSMUST00000034382 2632 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Brf1Q8CFK2 G3bp2-202ENSMUST00000164378 3026 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
Brf1Q8CFK2 Traf7-210ENSMUST00000176353 2503 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
Brf1Q8CFK2 Scaf4-201ENSMUST00000039280 4165 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
Retrieved 100 of 76,532 protein–RNA pairs in 28.1 ms