Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Ube2i-208ENSMUST00000173084 1286 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Usp40Q8BWR4 Gm31816-201ENSMUST00000209388 1294 ntTSL 5 BASIC20.51■□□□□ 0.87
Usp40Q8BWR4 AC125206.2-201ENSMUST00000217454 574 ntBASIC20.51■□□□□ 0.87
Usp40Q8BWR4 Ggh-201ENSMUST00000098242 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Usp40Q8BWR4 Higd1a-201ENSMUST00000060251 2232 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Usp40Q8BWR4 Palm3-201ENSMUST00000055077 2452 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Usp40Q8BWR4 Rabggta-205ENSMUST00000227061 2882 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
Usp40Q8BWR4 Fam81a-201ENSMUST00000034749 3703 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Usp40Q8BWR4 Zfp764-201ENSMUST00000059199 2508 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Usp40Q8BWR4 Folr1-204ENSMUST00000106985 1313 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
Usp40Q8BWR4 Ets1-201ENSMUST00000034534 5080 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Usp40Q8BWR4 Mindy1-212ENSMUST00000168223 1812 ntTSL 5 BASIC20.5■□□□□ 0.87
Usp40Q8BWR4 Tmtc4-201ENSMUST00000037726 3416 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Usp40Q8BWR4 C2cd2l-206ENSMUST00000214602 2808 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Usp40Q8BWR4 Lrrc45-201ENSMUST00000026139 2492 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Usp40Q8BWR4 Atp6v0a1-203ENSMUST00000103110 2716 ntTSL 5 BASIC20.5■□□□□ 0.87
Usp40Q8BWR4 Pqlc1-204ENSMUST00000129043 1864 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
Usp40Q8BWR4 Fam219a-201ENSMUST00000108049 3296 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Usp40Q8BWR4 Prkab1-202ENSMUST00000111999 2026 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
Usp40Q8BWR4 Klhl31-201ENSMUST00000057781 6494 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Usp40Q8BWR4 Lcn5-202ENSMUST00000100312 660 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
Usp40Q8BWR4 Igfbp4-204ENSMUST00000140772 742 ntTSL 2 BASIC20.5■□□□□ 0.87
Usp40Q8BWR4 2410080I02Rik-201ENSMUST00000142712 414 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Usp40Q8BWR4 Pkig-209ENSMUST00000164399 983 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
Usp40Q8BWR4 Vdac2-209ENSMUST00000173456 956 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
Usp40Q8BWR4 Prok2-204ENSMUST00000203738 695 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Usp40Q8BWR4 Aif1-201ENSMUST00000025257 847 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
Usp40Q8BWR4 Dkkl1-201ENSMUST00000033057 1149 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
Usp40Q8BWR4 Gstp2-201ENSMUST00000042700 770 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Usp40Q8BWR4 Kcnj6-202ENSMUST00000099508 3086 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Usp40Q8BWR4 Gm17396-201ENSMUST00000172075 1655 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Usp40Q8BWR4 Tdg-ps-201ENSMUST00000051363 2968 ntBASIC20.5■□□□□ 0.87
Usp40Q8BWR4 Ttll9-202ENSMUST00000103155 1552 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
Usp40Q8BWR4 Cpxm1-201ENSMUST00000028897 2366 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Usp40Q8BWR4 Ptpn6-210ENSMUST00000174265 1743 ntTSL 5 BASIC20.5■□□□□ 0.87
Usp40Q8BWR4 Oas1a-201ENSMUST00000080322 1885 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Usp40Q8BWR4 Gldc-201ENSMUST00000025778 3754 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Usp40Q8BWR4 Gm21981-201ENSMUST00000143789 2721 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
Usp40Q8BWR4 Nlk-201ENSMUST00000142739 4444 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Usp40Q8BWR4 Eif4a3-201ENSMUST00000026667 1509 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Usp40Q8BWR4 Prkag2-203ENSMUST00000114975 2205 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Usp40Q8BWR4 Snph-203ENSMUST00000109875 4910 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
Usp40Q8BWR4 Gm16137-201ENSMUST00000161571 664 ntTSL 5 BASIC20.49■□□□□ 0.87
Usp40Q8BWR4 Gm27533-201ENSMUST00000183800 152 ntBASIC20.49■□□□□ 0.87
Usp40Q8BWR4 Gm33337-201ENSMUST00000219594 228 ntTSL 3 BASIC20.49■□□□□ 0.87
Usp40Q8BWR4 CT025535.1-201ENSMUST00000227172 491 ntBASIC20.49■□□□□ 0.87
Usp40Q8BWR4 Pabpn1l-201ENSMUST00000093059 1148 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
Usp40Q8BWR4 Khsrp-201ENSMUST00000007814 3990 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Usp40Q8BWR4 Fam160a2-203ENSMUST00000118726 2855 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
Usp40Q8BWR4 Zfp444-201ENSMUST00000054680 2467 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Usp40Q8BWR4 Snx8-201ENSMUST00000031539 2627 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
Usp40Q8BWR4 Lrch3-210ENSMUST00000170201 2902 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
Usp40Q8BWR4 2210016F16Rik-201ENSMUST00000022032 3051 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Usp40Q8BWR4 Rsu1-202ENSMUST00000114791 1604 ntTSL 5 BASIC20.49■□□□□ 0.87
Usp40Q8BWR4 Smad1-203ENSMUST00000109885 3775 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Usp40Q8BWR4 Unc13b-201ENSMUST00000079978 6354 ntAPPRIS P2 TSL 5 BASIC20.48■□□□□ 0.87
Usp40Q8BWR4 Zswim8-201ENSMUST00000022358 6073 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
Usp40Q8BWR4 Cxcr3-201ENSMUST00000056614 1731 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Usp40Q8BWR4 Fnip2-201ENSMUST00000076136 3775 ntAPPRIS P2 TSL 5 BASIC20.48■□□□□ 0.87
Usp40Q8BWR4 Krtap1-3-201ENSMUST00000104930 879 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
Usp40Q8BWR4 Hist3h2bb-ps-201ENSMUST00000117558 465 ntBASIC20.48■□□□□ 0.87
Usp40Q8BWR4 Mir6977-201ENSMUST00000184960 64 ntBASIC20.48■□□□□ 0.87
Usp40Q8BWR4 Wdyhv1-203ENSMUST00000226889 394 ntBASIC20.48■□□□□ 0.87
Usp40Q8BWR4 Slc43a3-201ENSMUST00000090726 2583 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Usp40Q8BWR4 Acbd5-203ENSMUST00000114526 3725 ntAPPRIS P4 TSL 1 (best) BASIC20.48■□□□□ 0.87
Usp40Q8BWR4 Cdcp2-202ENSMUST00000221740 1623 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
Usp40Q8BWR4 Gnas-211ENSMUST00000109096 2465 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Usp40Q8BWR4 Atat1-203ENSMUST00000077494 1340 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
Usp40Q8BWR4 Rcbtb2-226ENSMUST00000171767 2692 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Usp40Q8BWR4 Arpp19-201ENSMUST00000007800 4046 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Usp40Q8BWR4 Kat2a-201ENSMUST00000006973 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
Usp40Q8BWR4 Agfg1-201ENSMUST00000063380 2896 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Usp40Q8BWR4 Miip-202ENSMUST00000119975 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
Usp40Q8BWR4 Myod1-201ENSMUST00000072514 1861 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Usp40Q8BWR4 Fgf13-203ENSMUST00000119833 2237 ntTSL 5 BASIC20.47■□□□□ 0.87
Usp40Q8BWR4 Mindy4-203ENSMUST00000204842 2211 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Usp40Q8BWR4 Etnk1-201ENSMUST00000032413 6433 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Usp40Q8BWR4 Gm15559-201ENSMUST00000132267 2260 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Usp40Q8BWR4 Gm10814-201ENSMUST00000180505 1933 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Usp40Q8BWR4 Wipi1-201ENSMUST00000047186 3338 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Usp40Q8BWR4 Stambp-206ENSMUST00000206400 2144 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Usp40Q8BWR4 Gm26681-201ENSMUST00000180851 1440 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Usp40Q8BWR4 Ints8-203ENSMUST00000108319 3220 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Usp40Q8BWR4 Dyx1c1-202ENSMUST00000098567 1612 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
Usp40Q8BWR4 Tle2-205ENSMUST00000135211 2746 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
Usp40Q8BWR4 Fis1-203ENSMUST00000111097 601 ntTSL 2 BASIC20.47■□□□□ 0.87
Usp40Q8BWR4 Rpl9-202ENSMUST00000118543 1193 ntTSL 2 BASIC20.47■□□□□ 0.87
Usp40Q8BWR4 Gm11724-201ENSMUST00000125577 472 ntTSL 2 BASIC20.47■□□□□ 0.87
Usp40Q8BWR4 1700060J05Rik-201ENSMUST00000138377 1060 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Usp40Q8BWR4 Gm27437-201ENSMUST00000183429 107 ntBASIC20.47■□□□□ 0.87
Usp40Q8BWR4 Fis1-201ENSMUST00000019198 786 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Usp40Q8BWR4 Gm9063-201ENSMUST00000223299 582 ntBASIC20.47■□□□□ 0.87
Usp40Q8BWR4 Tm9sf1-204ENSMUST00000121937 2398 ntTSL 5 BASIC20.47■□□□□ 0.87
Usp40Q8BWR4 Tef-201ENSMUST00000023024 4079 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Usp40Q8BWR4 Tmem28-201ENSMUST00000096363 3909 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
Usp40Q8BWR4 Itpripl1-201ENSMUST00000110386 1898 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Usp40Q8BWR4 Tubb3-201ENSMUST00000071134 1868 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Usp40Q8BWR4 Chchd5-201ENSMUST00000035481 1325 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Usp40Q8BWR4 Kcnj8-201ENSMUST00000032374 2269 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Usp40Q8BWR4 Cxxc5-201ENSMUST00000060722 2271 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Retrieved 100 of 76,532 protein–RNA pairs in 42.5 ms