Protein–RNA interactions for Protein: Q05722

Col9a1, Collagen alpha-1(IX) chain, mousemouse

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col9a1Q05722 Gm13342-201ENSMUST00000121055 207 ntBASIC14.66□□□□□ -0.06
Col9a1Q05722 Gm15738-202ENSMUST00000140892 427 ntTSL 2 BASIC14.66□□□□□ -0.06
Col9a1Q05722 2810433D01Rik-202ENSMUST00000154798 1045 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Col9a1Q05722 Gm14209-201ENSMUST00000154946 462 ntTSL 5 BASIC14.66□□□□□ -0.06
Col9a1Q05722 Neat1-203ENSMUST00000174829 1030 ntTSL 5 BASIC14.66□□□□□ -0.06
Col9a1Q05722 Mir6979-201ENSMUST00000183927 56 ntBASIC14.66□□□□□ -0.06
Col9a1Q05722 Gm11523-203ENSMUST00000184482 802 ntTSL 3 BASIC14.66□□□□□ -0.06
Col9a1Q05722 Gm38000-201ENSMUST00000192390 1215 ntBASIC14.66□□□□□ -0.06
Col9a1Q05722 Spc24-204ENSMUST00000216057 627 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Col9a1Q05722 Gm36198-201ENSMUST00000217490 416 ntTSL 3 BASIC14.66□□□□□ -0.06
Col9a1Q05722 AC125539.1-201ENSMUST00000227423 622 ntBASIC14.66□□□□□ -0.06
Col9a1Q05722 Ndufb4-201ENSMUST00000023514 971 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Col9a1Q05722 Pde6g-201ENSMUST00000026452 900 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Col9a1Q05722 Sclt1-201ENSMUST00000026866 3005 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
Col9a1Q05722 Map3k1-201ENSMUST00000109267 6978 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
Col9a1Q05722 Ing1-207ENSMUST00000211007 2241 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Col9a1Q05722 T-201ENSMUST00000074667 2046 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Col9a1Q05722 F830208F22Rik-202ENSMUST00000143732 2891 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Col9a1Q05722 Smtn-201ENSMUST00000020718 1747 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Col9a1Q05722 Sirt3-202ENSMUST00000106048 1416 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
Col9a1Q05722 Vax2os-201ENSMUST00000123402 1435 ntTSL 5 BASIC14.66□□□□□ -0.06
Col9a1Q05722 Gm10371-201ENSMUST00000127429 1411 ntTSL 2 BASIC14.66□□□□□ -0.06
Col9a1Q05722 Trnt1-201ENSMUST00000057578 2283 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Col9a1Q05722 Ostm1-201ENSMUST00000040718 3006 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Col9a1Q05722 Chsy3-201ENSMUST00000080721 2931 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Col9a1Q05722 S1pr5-201ENSMUST00000122088 2500 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
Col9a1Q05722 Raxos1-201ENSMUST00000181100 2547 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Col9a1Q05722 Zfp862-ps-203ENSMUST00000203848 1776 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Col9a1Q05722 Fbxw17-201ENSMUST00000046974 1798 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Col9a1Q05722 Stxbp3-201ENSMUST00000102621 2419 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Col9a1Q05722 Atp8b2-201ENSMUST00000069805 5559 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
Col9a1Q05722 Tmx1-201ENSMUST00000021471 2795 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Col9a1Q05722 Enah-205ENSMUST00000177811 4231 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
Col9a1Q05722 Tnfrsf18-202ENSMUST00000103173 1189 ntAPPRIS P4 TSL 1 (best) BASIC14.65□□□□□ -0.06
Col9a1Q05722 C530008M17Rik-205ENSMUST00000121851 1165 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Col9a1Q05722 4933406I18Rik-201ENSMUST00000124673 905 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Col9a1Q05722 Gm3149-203ENSMUST00000179649 618 ntAPPRIS ALT2 TSL 2 BASIC14.65□□□□□ -0.06
Col9a1Q05722 Gm27847-201ENSMUST00000183711 107 ntBASIC14.65□□□□□ -0.06
Col9a1Q05722 Gm27375-201ENSMUST00000183799 107 ntBASIC14.65□□□□□ -0.06
Col9a1Q05722 2010106C02Rik-201ENSMUST00000191222 660 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Col9a1Q05722 Gm38182-203ENSMUST00000192984 993 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Col9a1Q05722 Pcdhgc5-204ENSMUST00000193941 593 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Col9a1Q05722 Gm42846-201ENSMUST00000201771 514 ntTSL 3 BASIC14.65□□□□□ -0.06
Col9a1Q05722 2900064F13Rik-201ENSMUST00000202166 1008 ntBASIC14.65□□□□□ -0.06
Col9a1Q05722 Gm44066-201ENSMUST00000203263 519 ntTSL 3 BASIC14.65□□□□□ -0.06
Col9a1Q05722 Gm44780-201ENSMUST00000205409 581 ntTSL 3 BASIC14.65□□□□□ -0.06
Col9a1Q05722 Disp3-201ENSMUST00000047720 5282 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
Col9a1Q05722 Card10-202ENSMUST00000164826 4726 ntAPPRIS P2 TSL 1 (best) BASIC14.65□□□□□ -0.06
Col9a1Q05722 Npas3-203ENSMUST00000223057 2724 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
Col9a1Q05722 Tmod1-201ENSMUST00000107773 3158 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
Col9a1Q05722 Id2-202ENSMUST00000221761 1969 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
Col9a1Q05722 Denr-201ENSMUST00000023869 2339 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Col9a1Q05722 Gm36065-202ENSMUST00000219654 1424 ntTSL 5 BASIC14.65□□□□□ -0.06
Col9a1Q05722 Txnl1-201ENSMUST00000025476 2558 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Col9a1Q05722 Ubac2-201ENSMUST00000039803 2139 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Col9a1Q05722 2310026I22Rik-201ENSMUST00000180941 1300 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Col9a1Q05722 AC130669.1-201ENSMUST00000228537 1672 ntBASIC14.65□□□□□ -0.06
Col9a1Q05722 Sctr-201ENSMUST00000072886 2012 ntAPPRIS P3 TSL 2 BASIC14.65□□□□□ -0.06
Col9a1Q05722 Cpq-201ENSMUST00000042167 1923 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Col9a1Q05722 Thsd7a-202ENSMUST00000119581 5678 ntAPPRIS P2 TSL 5 BASIC14.64□□□□□ -0.07
Col9a1Q05722 Eomes-202ENSMUST00000111763 2869 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
Col9a1Q05722 Brsk2-202ENSMUST00000075528 2160 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Col9a1Q05722 Fam43b-201ENSMUST00000105032 2437 ntAPPRIS P1 BASIC14.64□□□□□ -0.07
Col9a1Q05722 Dnajc2-204ENSMUST00000115195 1994 ntTSL 5 BASIC14.64□□□□□ -0.07
Col9a1Q05722 Gm128-201ENSMUST00000090815 1959 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Col9a1Q05722 Spo11-203ENSMUST00000109126 1625 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Col9a1Q05722 Krt74-201ENSMUST00000088018 1648 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
Col9a1Q05722 A330074K22Rik-201ENSMUST00000183235 2489 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Col9a1Q05722 H13-203ENSMUST00000109825 1063 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Col9a1Q05722 Camp-201ENSMUST00000112022 758 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Col9a1Q05722 Mypopos-201ENSMUST00000124897 560 ntTSL 3 BASIC14.64□□□□□ -0.07
Col9a1Q05722 Oprm1-229ENSMUST00000152674 1179 ntTSL 3 BASIC14.64□□□□□ -0.07
Col9a1Q05722 Fbxw4-203ENSMUST00000160003 387 ntTSL 3 BASIC14.64□□□□□ -0.07
Col9a1Q05722 Gm2383-201ENSMUST00000181461 807 ntBASIC14.64□□□□□ -0.07
Col9a1Q05722 Cxcl17-202ENSMUST00000200880 760 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
Col9a1Q05722 Gm7561-201ENSMUST00000211203 886 ntBASIC14.64□□□□□ -0.07
Col9a1Q05722 Il31-201ENSMUST00000031389 806 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Col9a1Q05722 Ngf-201ENSMUST00000035952 904 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
Col9a1Q05722 Ube2i-201ENSMUST00000049911 1138 ntAPPRIS P1 TSL 3 BASIC14.64□□□□□ -0.07
Col9a1Q05722 Gm9823-201ENSMUST00000051212 327 ntBASIC14.64□□□□□ -0.07
Col9a1Q05722 Cxcl17-201ENSMUST00000074040 761 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
Col9a1Q05722 Susd1-202ENSMUST00000107544 3220 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
Col9a1Q05722 Irx4-202ENSMUST00000176684 2384 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
Col9a1Q05722 Klhdc10-201ENSMUST00000068240 3951 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Col9a1Q05722 Capn1-201ENSMUST00000025891 3100 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Col9a1Q05722 Alpl-201ENSMUST00000030551 2522 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Col9a1Q05722 Mindy2-201ENSMUST00000049031 8081 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
Col9a1Q05722 Fpr1-201ENSMUST00000061516 1324 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Col9a1Q05722 Mtx2-201ENSMUST00000028511 2950 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Col9a1Q05722 Parp6-201ENSMUST00000026267 2709 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
Col9a1Q05722 Mbnl1-201ENSMUST00000099087 5655 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
Col9a1Q05722 Plppr5-202ENSMUST00000106473 4294 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Col9a1Q05722 2610206C17Rik-201ENSMUST00000129059 1717 ntTSL 2 BASIC14.63□□□□□ -0.07
Col9a1Q05722 Mcu-202ENSMUST00000020312 2872 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
Col9a1Q05722 Sbf1-205ENSMUST00000144585 6165 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
Col9a1Q05722 Ryr2-203ENSMUST00000220597 4924 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Col9a1Q05722 Gm5105-201ENSMUST00000053318 1665 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Col9a1Q05722 Slc31a2-203ENSMUST00000107468 743 ntAPPRIS ALT1 TSL 5 BASIC14.63□□□□□ -0.07
Col9a1Q05722 Prss41-202ENSMUST00000122936 1088 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
Col9a1Q05722 Gm45692-201ENSMUST00000131138 557 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
Retrieved 100 of 76,532 protein–RNA pairs in 20.1 ms