Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Znhit1-202ENSMUST00000085941 740 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Rfx1P48377 AC148324.1-201ENSMUST00000219034 4240 ntBASIC17.98■□□□□ 0.47
Rfx1P48377 Cpeb2-205ENSMUST00000169035 7050 ntAPPRIS P2 TSL 5 BASIC17.98■□□□□ 0.47
Rfx1P48377 Mapk1ip1-203ENSMUST00000119664 1883 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Rfx1P48377 Gm43951-201ENSMUST00000204457 2889 ntAPPRIS P1 BASIC17.98■□□□□ 0.47
Rfx1P48377 Mapk9-210ENSMUST00000178543 4677 ntAPPRIS ALT1 TSL 5 BASIC17.98■□□□□ 0.47
Rfx1P48377 Tmem2-201ENSMUST00000025663 6585 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Rfx1P48377 Usp31-201ENSMUST00000046929 10198 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
Rfx1P48377 Six4-201ENSMUST00000043208 6402 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Rfx1P48377 Ctnnd2-203ENSMUST00000226119 4111 ntAPPRIS ALT2 BASIC17.98■□□□□ 0.47
Rfx1P48377 Trim24-203ENSMUST00000120428 3940 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Rfx1P48377 Bud23-201ENSMUST00000071677 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Rfx1P48377 Brix1-201ENSMUST00000022855 2664 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Rfx1P48377 Ddi2-201ENSMUST00000102484 9553 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Rfx1P48377 Clec2h-201ENSMUST00000032518 2160 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Rfx1P48377 Mtfr2-201ENSMUST00000169712 1991 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Rfx1P48377 Chst8-204ENSMUST00000205259 1980 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
Rfx1P48377 Oas1a-201ENSMUST00000080322 1885 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Rfx1P48377 Itpk1-201ENSMUST00000046518 2918 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Rfx1P48377 Iffo1-202ENSMUST00000119527 2840 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
Rfx1P48377 Cgn-202ENSMUST00000107273 5016 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
Rfx1P48377 Trib1-201ENSMUST00000067543 4330 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Rfx1P48377 Pdgfa-203ENSMUST00000110896 1363 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
Rfx1P48377 Rbm22-201ENSMUST00000025506 2210 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Rfx1P48377 Gm128-202ENSMUST00000107197 1289 ntTSL 2 BASIC17.97■□□□□ 0.47
Rfx1P48377 Ccnd3-ps-201ENSMUST00000117963 881 ntBASIC17.97■□□□□ 0.47
Rfx1P48377 Gm16181-201ENSMUST00000118793 567 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Rfx1P48377 Orai3-203ENSMUST00000121504 2141 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Rfx1P48377 Gm7506-201ENSMUST00000207758 815 ntBASIC17.97■□□□□ 0.47
Rfx1P48377 Pspn-201ENSMUST00000002740 474 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Rfx1P48377 Mpc2-201ENSMUST00000027853 1025 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Rfx1P48377 Hist1h2aj-201ENSMUST00000091710 352 ntBASIC17.97■□□□□ 0.47
Rfx1P48377 Gm38391-201ENSMUST00000191720 4069 ntBASIC17.97■□□□□ 0.47
Rfx1P48377 Tap2-201ENSMUST00000025197 3442 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Rfx1P48377 Ddx39-202ENSMUST00000109810 1794 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
Rfx1P48377 Ilf2-201ENSMUST00000001042 2027 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Rfx1P48377 Kpna4-201ENSMUST00000029353 8819 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Rfx1P48377 Prdm5-201ENSMUST00000031973 1488 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Rfx1P48377 1700029J07Rik-201ENSMUST00000095323 2740 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Rfx1P48377 Usp1-202ENSMUST00000091358 3527 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Rfx1P48377 Rgs3-201ENSMUST00000065870 4698 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Rfx1P48377 Cand2-201ENSMUST00000075995 5474 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Rfx1P48377 Cry2-202ENSMUST00000111278 2160 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Rfx1P48377 Rbbp9-201ENSMUST00000028915 2170 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Rfx1P48377 Hs3st3b1-201ENSMUST00000094103 4911 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Rfx1P48377 Reps2-202ENSMUST00000112334 7675 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
Rfx1P48377 Zfp64-202ENSMUST00000109161 1009 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Rfx1P48377 Gm25016-201ENSMUST00000158399 131 ntBASIC17.96■□□□□ 0.47
Rfx1P48377 Gm27867-201ENSMUST00000184778 125 ntBASIC17.96■□□□□ 0.47
Rfx1P48377 Gm45091-201ENSMUST00000205799 504 ntTSL 3 BASIC17.96■□□□□ 0.47
Rfx1P48377 4932443I19Rik-204ENSMUST00000214337 1212 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
Rfx1P48377 Ube2t-201ENSMUST00000027687 1116 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Rfx1P48377 Myoz1-201ENSMUST00000090469 1289 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Rfx1P48377 Repin1-204ENSMUST00000135151 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
Rfx1P48377 Gm21981-201ENSMUST00000143789 2721 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
Rfx1P48377 Ppp2r5b-201ENSMUST00000025695 2742 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Rfx1P48377 Gtf2h1-201ENSMUST00000006774 2736 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Rfx1P48377 Ano7-201ENSMUST00000058682 2963 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
Rfx1P48377 Dtx3-201ENSMUST00000038217 1944 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
Rfx1P48377 Scap-201ENSMUST00000098350 4227 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
Rfx1P48377 Nsd3-207ENSMUST00000143445 2416 ntTSL 1 (best) BASIC17.96■□□□□ 0.46
Rfx1P48377 Syndig1-201ENSMUST00000109934 2081 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
Rfx1P48377 Mfsd6l-201ENSMUST00000053211 2060 ntAPPRIS P1 BASIC17.95■□□□□ 0.46
Rfx1P48377 4930402H24Rik-202ENSMUST00000110243 1984 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Rfx1P48377 Rnf31-201ENSMUST00000019443 3485 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Rfx1P48377 Ybx1-201ENSMUST00000079644 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Rfx1P48377 Psmd14-201ENSMUST00000028278 1541 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Rfx1P48377 Pja1-205ENSMUST00000167246 2666 ntAPPRIS P4 TSL 1 (best) BASIC17.95■□□□□ 0.46
Rfx1P48377 Pthlh-202ENSMUST00000204197 1281 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
Rfx1P48377 Aqp12-201ENSMUST00000059676 1088 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Rfx1P48377 Ptk2-202ENSMUST00000170939 3598 ntTSL 2 BASIC17.95■□□□□ 0.46
Rfx1P48377 Txndc11-202ENSMUST00000118362 4248 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Rfx1P48377 Acaa1b-201ENSMUST00000010795 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Rfx1P48377 Commd7-201ENSMUST00000071852 3210 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Rfx1P48377 Plod2-201ENSMUST00000070522 3649 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
Rfx1P48377 Pqlc2-205ENSMUST00000172747 1405 ntAPPRIS P2 TSL 5 BASIC17.95■□□□□ 0.46
Rfx1P48377 B3gnt4-201ENSMUST00000031384 1423 ntAPPRIS P1 BASIC17.95■□□□□ 0.46
Rfx1P48377 Iqce-202ENSMUST00000077890 2494 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Rfx1P48377 Raet1e-204ENSMUST00000181645 1579 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Rfx1P48377 Anks1b-213ENSMUST00000182284 2607 ntTSL 5 BASIC17.95■□□□□ 0.46
Rfx1P48377 Ssu2-201ENSMUST00000060847 1321 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Rfx1P48377 Celf4-206ENSMUST00000224553 1729 ntBASIC17.95■□□□□ 0.46
Rfx1P48377 Pld3-202ENSMUST00000117611 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Rfx1P48377 Tmem30a-202ENSMUST00000120690 3627 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
Rfx1P48377 Dnajc6-202ENSMUST00000094953 5322 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
Rfx1P48377 Synj2-210ENSMUST00000115791 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
Rfx1P48377 Fbrs-202ENSMUST00000205432 4166 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
Rfx1P48377 Mdfic-203ENSMUST00000125326 3635 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Rfx1P48377 2410018L13Rik-205ENSMUST00000149246 3370 ntTSL 2 BASIC17.94■□□□□ 0.46
Rfx1P48377 Tmem39a-214ENSMUST00000171687 2667 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Rfx1P48377 Gm20033-201ENSMUST00000180470 572 ntTSL 3 BASIC17.94■□□□□ 0.46
Rfx1P48377 Hikeshi-207ENSMUST00000207309 835 ntTSL 5 BASIC17.94■□□□□ 0.46
Rfx1P48377 Ten1-201ENSMUST00000021130 902 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Rfx1P48377 AC158538.2-201ENSMUST00000225455 906 ntBASIC17.94■□□□□ 0.46
Rfx1P48377 App-204ENSMUST00000227021 3264 ntAPPRIS ALT2 BASIC17.94■□□□□ 0.46
Rfx1P48377 Tmem198b-201ENSMUST00000051011 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Rfx1P48377 Apol8-202ENSMUST00000089450 2498 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
Rfx1P48377 Elmod1-201ENSMUST00000048409 2605 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
Rfx1P48377 Spcs2-201ENSMUST00000036274 2909 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Rfx1P48377 Rtkn-202ENSMUST00000087938 3080 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
Retrieved 100 of 76,532 protein–RNA pairs in 20.3 ms