Protein–RNA interactions for Protein: O88609

Lmx1b, LIM homeobox transcription factor 1-beta, mousemouse

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lmx1bO88609 Tle1-203ENSMUST00000074216 4369 ntAPPRIS ALT1 TSL 5 BASIC13.61□□□□□ -0.23
Lmx1bO88609 Ccdc42-203ENSMUST00000154294 1384 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
Lmx1bO88609 Gtdc1-202ENSMUST00000100127 2422 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Lmx1bO88609 Ddx39-202ENSMUST00000109810 1794 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
Lmx1bO88609 Sept8-202ENSMUST00000117061 4563 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
Lmx1bO88609 Chst3-203ENSMUST00000167915 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
Lmx1bO88609 Ern1-202ENSMUST00000106799 660 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Lmx1bO88609 Dpm3-202ENSMUST00000107462 827 ntAPPRIS P1 TSL 3 BASIC13.61□□□□□ -0.23
Lmx1bO88609 Acyp1-203ENSMUST00000117138 735 ntAPPRIS P1 TSL 2 BASIC13.61□□□□□ -0.23
Lmx1bO88609 Gm15427-201ENSMUST00000117288 531 ntBASIC13.61□□□□□ -0.23
Lmx1bO88609 Gm6226-201ENSMUST00000117765 1146 ntBASIC13.61□□□□□ -0.23
Lmx1bO88609 Rpl18-ps1-201ENSMUST00000121555 525 ntBASIC13.61□□□□□ -0.23
Lmx1bO88609 Rhox2a-202ENSMUST00000173650 735 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Lmx1bO88609 Gm27301-201ENSMUST00000184012 127 ntBASIC13.61□□□□□ -0.23
Lmx1bO88609 Rhox2c-204ENSMUST00000184688 720 ntTSL 5 BASIC13.61□□□□□ -0.23
Lmx1bO88609 Thap2-203ENSMUST00000218989 527 ntBASIC13.61□□□□□ -0.23
Lmx1bO88609 AC154621.1-201ENSMUST00000226155 1119 ntBASIC13.61□□□□□ -0.23
Lmx1bO88609 Calcb-201ENSMUST00000032902 962 ntAPPRIS P2 TSL 1 (best) BASIC13.61□□□□□ -0.23
Lmx1bO88609 Nhlh2-202ENSMUST00000196324 2647 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Lmx1bO88609 Gcnt4-201ENSMUST00000171324 5087 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Lmx1bO88609 Rps6kb2-202ENSMUST00000118483 1409 ntTSL 5 BASIC13.61□□□□□ -0.23
Lmx1bO88609 Lonrf3-201ENSMUST00000016383 2911 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Lmx1bO88609 Smox-208ENSMUST00000110188 1991 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Lmx1bO88609 Repin1-207ENSMUST00000163452 2959 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
Lmx1bO88609 Arhgef12-202ENSMUST00000165665 10752 ntAPPRIS P2 TSL 1 (best) BASIC13.61□□□□□ -0.23
Lmx1bO88609 Baz1b-201ENSMUST00000002825 6492 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Lmx1bO88609 Dlc1-203ENSMUST00000098826 6241 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
Lmx1bO88609 Nfat5-211ENSMUST00000151114 4982 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
Lmx1bO88609 Ralgapa1-201ENSMUST00000085385 7901 ntAPPRIS P2 TSL 1 (best) BASIC13.61□□□□□ -0.23
Lmx1bO88609 Fam133b-201ENSMUST00000115527 1491 ntAPPRIS P2 TSL 1 (best) BASIC13.61□□□□□ -0.23
Lmx1bO88609 1600014C10Rik-208ENSMUST00000179525 2326 ntTSL 2 BASIC13.61□□□□□ -0.23
Lmx1bO88609 Xpo1-202ENSMUST00000102869 6004 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Lmx1bO88609 Ccnj-203ENSMUST00000120057 3783 ntTSL 5 BASIC13.6□□□□□ -0.23
Lmx1bO88609 Irf1-201ENSMUST00000019043 2069 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
Lmx1bO88609 Dffb-201ENSMUST00000030893 2093 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Lmx1bO88609 Cgn-203ENSMUST00000153263 2210 ntTSL 2 BASIC13.6□□□□□ -0.23
Lmx1bO88609 Gm31774-201ENSMUST00000212910 1366 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Lmx1bO88609 Vav1-204ENSMUST00000169220 2810 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
Lmx1bO88609 Slc3a2-202ENSMUST00000170157 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
Lmx1bO88609 Pdhb-201ENSMUST00000022268 1513 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Lmx1bO88609 Fam219a-201ENSMUST00000108049 3296 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Lmx1bO88609 Gfm2-211ENSMUST00000161913 1829 ntTSL 2 BASIC13.6□□□□□ -0.23
Lmx1bO88609 Vgll3-201ENSMUST00000168064 7009 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Lmx1bO88609 Ifna12-201ENSMUST00000102806 797 ntAPPRIS P1 BASIC13.6□□□□□ -0.23
Lmx1bO88609 Gm15706-201ENSMUST00000139612 899 ntTSL 2 BASIC13.6□□□□□ -0.23
Lmx1bO88609 Psmg3-202ENSMUST00000182602 733 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Lmx1bO88609 Arfgap1-213ENSMUST00000184394 1209 ntAPPRIS ALT2 TSL 5 BASIC13.6□□□□□ -0.23
Lmx1bO88609 Abhd18-207ENSMUST00000203892 1021 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Lmx1bO88609 Gm44081-201ENSMUST00000204406 643 ntTSL 3 BASIC13.6□□□□□ -0.23
Lmx1bO88609 Tmem88-201ENSMUST00000050140 1582 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Lmx1bO88609 Cdon-202ENSMUST00000119129 7503 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
Lmx1bO88609 Adam23-204ENSMUST00000114103 2655 ntAPPRIS ALT2 TSL 5 BASIC13.6□□□□□ -0.23
Lmx1bO88609 Eml5-210ENSMUST00000223282 7595 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
Lmx1bO88609 Slc23a3-201ENSMUST00000027405 2059 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Lmx1bO88609 Cyp2d10-201ENSMUST00000072776 1647 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Lmx1bO88609 Slc33a1-203ENSMUST00000161659 2554 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Lmx1bO88609 Cct7-201ENSMUST00000032078 2441 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Lmx1bO88609 Pld2-202ENSMUST00000108556 3391 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Lmx1bO88609 Camk2b-205ENSMUST00000093355 1973 ntTSL 5 BASIC13.6□□□□□ -0.23
Lmx1bO88609 Nap1l5-201ENSMUST00000059539 1844 ntAPPRIS P1 BASIC13.6□□□□□ -0.23
Lmx1bO88609 AC130669.1-201ENSMUST00000228537 1672 ntBASIC13.59□□□□□ -0.23
Lmx1bO88609 Chmp4c-201ENSMUST00000029049 6188 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Lmx1bO88609 Aanat-205ENSMUST00000153476 1353 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Lmx1bO88609 Cdcp1-201ENSMUST00000039229 5310 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Lmx1bO88609 Agfg1-201ENSMUST00000063380 2896 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Lmx1bO88609 Aifm1-202ENSMUST00000114945 2221 ntAPPRIS ALT2 TSL 5 BASIC13.59□□□□□ -0.23
Lmx1bO88609 Ube2l6-201ENSMUST00000102642 1560 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Lmx1bO88609 Hoxb1-201ENSMUST00000019117 2086 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Lmx1bO88609 Sipa1l1-202ENSMUST00000166429 8215 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
Lmx1bO88609 Gm3252-201ENSMUST00000165619 1949 ntAPPRIS P1 TSL 5 BASIC13.59□□□□□ -0.23
Lmx1bO88609 Gm2109-201ENSMUST00000189326 1409 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Lmx1bO88609 Gm10584-201ENSMUST00000207036 2628 ntBASIC13.59□□□□□ -0.23
Lmx1bO88609 Pik3ap1-201ENSMUST00000059672 2615 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Lmx1bO88609 Cab39-202ENSMUST00000113360 3805 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Lmx1bO88609 Gm14701-201ENSMUST00000117156 348 ntBASIC13.59□□□□□ -0.23
Lmx1bO88609 Gm9385-201ENSMUST00000117563 472 ntBASIC13.59□□□□□ -0.23
Lmx1bO88609 Gm12008-201ENSMUST00000117791 755 ntBASIC13.59□□□□□ -0.23
Lmx1bO88609 Cldn25-ps-201ENSMUST00000197641 693 ntBASIC13.59□□□□□ -0.23
Lmx1bO88609 Ybx1-ps2-201ENSMUST00000201305 957 ntBASIC13.59□□□□□ -0.23
Lmx1bO88609 Hddc3-206ENSMUST00000206074 565 ntTSL 2 BASIC13.59□□□□□ -0.23
Lmx1bO88609 Gjb6-201ENSMUST00000039380 2105 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Lmx1bO88609 Sfxn5-202ENSMUST00000059034 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
Lmx1bO88609 Sbno2-204ENSMUST00000217972 2462 ntTSL 2 BASIC13.59□□□□□ -0.23
Lmx1bO88609 Gm3045-201ENSMUST00000212844 1825 ntAPPRIS P1 TSL 5 BASIC13.59□□□□□ -0.23
Lmx1bO88609 Ncf1-205ENSMUST00000144086 2882 ntTSL 2 BASIC13.59□□□□□ -0.23
Lmx1bO88609 Spon1-202ENSMUST00000084696 5201 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Lmx1bO88609 Bag4-201ENSMUST00000038498 4876 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Lmx1bO88609 Usp4-201ENSMUST00000035237 3662 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
Lmx1bO88609 Camta1-202ENSMUST00000097774 8533 ntAPPRIS ALT2 TSL 5 BASIC13.59□□□□□ -0.23
Lmx1bO88609 Sec24a-203ENSMUST00000109092 2094 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Lmx1bO88609 Pbk-201ENSMUST00000022612 1720 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Lmx1bO88609 Tdrd7-201ENSMUST00000102929 3716 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
Lmx1bO88609 Kdr-201ENSMUST00000113516 5924 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
Lmx1bO88609 Map6-203ENSMUST00000122101 3233 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.23
Lmx1bO88609 Fscn1-201ENSMUST00000031565 2675 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
Lmx1bO88609 Rbfox3-205ENSMUST00000117731 3084 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.23
Lmx1bO88609 Gbp5-201ENSMUST00000090127 3055 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
Lmx1bO88609 Phospho2-202ENSMUST00000112266 2194 ntAPPRIS P1 TSL 3 BASIC13.58□□□□□ -0.24
Lmx1bO88609 Otol1-201ENSMUST00000053013 2161 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Lmx1bO88609 Cilp2-201ENSMUST00000057831 4314 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.24
Retrieved 100 of 76,532 protein–RNA pairs in 62.1 ms