Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Ralgds-203ENSMUST00000113893 3683 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trim3Q9R1R2 Atp13a3-201ENSMUST00000061350 7220 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
Trim3Q9R1R2 Prelid1-201ENSMUST00000021942 2644 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trim3Q9R1R2 Serpinf1-201ENSMUST00000000769 1832 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trim3Q9R1R2 Nphp1-201ENSMUST00000028857 2260 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trim3Q9R1R2 Ppp4r4-201ENSMUST00000021631 3964 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trim3Q9R1R2 Stk11-202ENSMUST00000105370 1474 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Trim3Q9R1R2 Pdlim5-212ENSMUST00000200043 1581 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trim3Q9R1R2 Pptc7-202ENSMUST00000119015 2233 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trim3Q9R1R2 Fstl1-201ENSMUST00000114763 3789 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trim3Q9R1R2 Miga1-202ENSMUST00000073089 4965 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trim3Q9R1R2 Ppp2r1a-201ENSMUST00000007708 2410 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trim3Q9R1R2 Bsx-201ENSMUST00000067375 2960 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trim3Q9R1R2 Arid3a-203ENSMUST00000105377 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trim3Q9R1R2 6530402F18Rik-203ENSMUST00000155949 4301 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Trim3Q9R1R2 Ldha-210ENSMUST00000209984 1815 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Trim3Q9R1R2 Rnf150-201ENSMUST00000078525 9682 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trim3Q9R1R2 Ndufa5-202ENSMUST00000118558 315 ntTSL 2 BASIC14.16□□□□□ -0.14
Trim3Q9R1R2 Rbmx-206ENSMUST00000143310 1296 ntTSL 5 BASIC14.16□□□□□ -0.14
Trim3Q9R1R2 Gm43514-201ENSMUST00000198852 424 ntBASIC14.16□□□□□ -0.14
Trim3Q9R1R2 AW822252-206ENSMUST00000208904 237 ntBASIC14.16□□□□□ -0.14
Trim3Q9R1R2 Gm19164-201ENSMUST00000210667 640 ntBASIC14.16□□□□□ -0.14
Trim3Q9R1R2 AC093926.2-201ENSMUST00000214468 1228 ntBASIC14.16□□□□□ -0.14
Trim3Q9R1R2 2300002M23Rik-201ENSMUST00000044326 1290 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trim3Q9R1R2 Bhlha9-201ENSMUST00000056184 1207 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
Trim3Q9R1R2 Gstt2-201ENSMUST00000038257 1370 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trim3Q9R1R2 Akt2-202ENSMUST00000085917 1392 ntTSL 5 BASIC14.16□□□□□ -0.14
Trim3Q9R1R2 AC154527.4-201ENSMUST00000224364 1667 ntBASIC14.16□□□□□ -0.14
Trim3Q9R1R2 Msi1-208ENSMUST00000150779 3133 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trim3Q9R1R2 Fbln1-202ENSMUST00000109432 2273 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trim3Q9R1R2 Ino80-201ENSMUST00000049920 6354 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
Trim3Q9R1R2 Zbtb20-202ENSMUST00000114690 2759 ntAPPRIS ALT1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trim3Q9R1R2 Ncf1-201ENSMUST00000016094 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trim3Q9R1R2 Gjd2-201ENSMUST00000090275 2879 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trim3Q9R1R2 Tmem94-201ENSMUST00000093912 5329 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trim3Q9R1R2 Dennd4c-201ENSMUST00000045512 5648 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
Trim3Q9R1R2 Ppp2r2c-201ENSMUST00000031003 4088 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trim3Q9R1R2 Psmc4-201ENSMUST00000032824 1440 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trim3Q9R1R2 Hnf4a-201ENSMUST00000018094 4356 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trim3Q9R1R2 Sept8-202ENSMUST00000117061 4563 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trim3Q9R1R2 Alx1-204ENSMUST00000217946 1542 ntTSL 5 BASIC14.15□□□□□ -0.14
Trim3Q9R1R2 Rgl1-203ENSMUST00000111859 5092 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
Trim3Q9R1R2 Pik3ap1-201ENSMUST00000059672 2615 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trim3Q9R1R2 Nxnl1-202ENSMUST00000163659 2730 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
Trim3Q9R1R2 Zfp202-203ENSMUST00000168832 3329 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Trim3Q9R1R2 Ube2j1-202ENSMUST00000124992 3530 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trim3Q9R1R2 Dlat-201ENSMUST00000034567 4035 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trim3Q9R1R2 Gpd1l-204ENSMUST00000146623 4391 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trim3Q9R1R2 Usp35-201ENSMUST00000139582 4262 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
Trim3Q9R1R2 Rgs20-201ENSMUST00000002533 1778 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trim3Q9R1R2 Rnf217-201ENSMUST00000081989 11013 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
Trim3Q9R1R2 Slc24a3-202ENSMUST00000110007 4048 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trim3Q9R1R2 Dnm1l-201ENSMUST00000023477 4017 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trim3Q9R1R2 Gm15358-201ENSMUST00000119249 520 ntBASIC14.15□□□□□ -0.14
Trim3Q9R1R2 Gm1401-201ENSMUST00000122048 772 ntBASIC14.15□□□□□ -0.14
Trim3Q9R1R2 Gm11536-201ENSMUST00000130733 535 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Trim3Q9R1R2 Gm11750-201ENSMUST00000146016 583 ntTSL 5 BASIC14.15□□□□□ -0.14
Trim3Q9R1R2 Ccl27a-217ENSMUST00000155240 343 ntTSL 2 BASIC14.15□□□□□ -0.14
Trim3Q9R1R2 Slc25a5-201ENSMUST00000016463 1240 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trim3Q9R1R2 Timm23-206ENSMUST00000170331 777 ntTSL 3 BASIC14.15□□□□□ -0.14
Trim3Q9R1R2 Mrpl34-201ENSMUST00000048914 607 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trim3Q9R1R2 Psmb4-201ENSMUST00000005923 1183 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trim3Q9R1R2 Wfdc6b-201ENSMUST00000094346 984 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trim3Q9R1R2 Phldb1-211ENSMUST00000135436 2844 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Trim3Q9R1R2 Dse-201ENSMUST00000048010 4389 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trim3Q9R1R2 Cspg5-201ENSMUST00000035058 3870 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trim3Q9R1R2 Dtx3-201ENSMUST00000038217 1944 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trim3Q9R1R2 Rps6ka5-201ENSMUST00000043599 4406 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trim3Q9R1R2 Medag-201ENSMUST00000093110 2953 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trim3Q9R1R2 Atg9a-208ENSMUST00000189702 4110 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
Trim3Q9R1R2 Acbd5-206ENSMUST00000155602 1714 ntAPPRIS ALT2 TSL 2 BASIC14.15□□□□□ -0.14
Trim3Q9R1R2 Nov-201ENSMUST00000050027 2869 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trim3Q9R1R2 Cd151-201ENSMUST00000058746 1619 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trim3Q9R1R2 Cyp2d10-201ENSMUST00000072776 1647 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trim3Q9R1R2 Lypd1-205ENSMUST00000162899 1511 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Trim3Q9R1R2 Cr1l-208ENSMUST00000194111 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trim3Q9R1R2 Rsbn1l-201ENSMUST00000036489 5550 ntAPPRIS P2 TSL 5 BASIC14.15□□□□□ -0.15
Trim3Q9R1R2 Sigirr-206ENSMUST00000210167 1897 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trim3Q9R1R2 Ecm1-201ENSMUST00000029753 1894 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trim3Q9R1R2 Mpped1-201ENSMUST00000046168 3265 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trim3Q9R1R2 Loxl2-201ENSMUST00000022660 5316 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trim3Q9R1R2 Gnat1-201ENSMUST00000010205 2328 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trim3Q9R1R2 Cgn-203ENSMUST00000153263 2210 ntTSL 2 BASIC14.14□□□□□ -0.15
Trim3Q9R1R2 Fam161a-205ENSMUST00000172602 1935 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
Trim3Q9R1R2 Cdk18-201ENSMUST00000027697 4355 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trim3Q9R1R2 Ftl2-ps-201ENSMUST00000118517 552 ntBASIC14.14□□□□□ -0.15
Trim3Q9R1R2 Gm26695-201ENSMUST00000180920 1251 ntTSL 5 BASIC14.14□□□□□ -0.15
Trim3Q9R1R2 Gm15590-201ENSMUST00000078419 552 ntBASIC14.14□□□□□ -0.15
Trim3Q9R1R2 Pde4dip-202ENSMUST00000090750 8376 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trim3Q9R1R2 Tle1-202ENSMUST00000072695 3644 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trim3Q9R1R2 Nhlh2-202ENSMUST00000196324 2647 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trim3Q9R1R2 Dnajc9-201ENSMUST00000022345 1631 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trim3Q9R1R2 Ccdc68-201ENSMUST00000043929 1618 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trim3Q9R1R2 Sec24a-203ENSMUST00000109092 2094 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Trim3Q9R1R2 Ppp1r15b-201ENSMUST00000052529 5594 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trim3Q9R1R2 Fnip2-201ENSMUST00000076136 3775 ntAPPRIS P2 TSL 5 BASIC14.14□□□□□ -0.15
Trim3Q9R1R2 4933434E20Rik-203ENSMUST00000068798 1500 ntTSL 5 BASIC14.14□□□□□ -0.15
Trim3Q9R1R2 Apc-202ENSMUST00000079362 8867 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trim3Q9R1R2 Grin3a-201ENSMUST00000076674 7431 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trim3Q9R1R2 Cds1-201ENSMUST00000031273 3924 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 25.9 ms