Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Trav13-3-201ENSMUST00000117226 336 ntBASIC20.19■□□□□ 0.82
Scn4aQ9ER60 Gm14617-202ENSMUST00000144208 607 ntTSL 3 BASIC20.19■□□□□ 0.82
Scn4aQ9ER60 Gm11523-203ENSMUST00000184482 802 ntTSL 3 BASIC20.19■□□□□ 0.82
Scn4aQ9ER60 Gm44127-201ENSMUST00000203565 291 ntTSL 3 BASIC20.19■□□□□ 0.82
Scn4aQ9ER60 Tmx1-201ENSMUST00000021471 2795 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Scn4aQ9ER60 Mien1-201ENSMUST00000002655 747 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Scn4aQ9ER60 Nptn-201ENSMUST00000085651 2024 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Scn4aQ9ER60 Pigw-201ENSMUST00000067058 2675 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Scn4aQ9ER60 Atp9a-211ENSMUST00000178504 3668 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
Scn4aQ9ER60 Hgfac-201ENSMUST00000030985 2135 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Scn4aQ9ER60 Lgr4-202ENSMUST00000111037 4988 ntTSL 5 BASIC20.19■□□□□ 0.82
Scn4aQ9ER60 4930447C04Rik-202ENSMUST00000110489 1988 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
Scn4aQ9ER60 Gm4858-202ENSMUST00000194595 1810 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Scn4aQ9ER60 Lhx6-205ENSMUST00000112967 3378 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Scn4aQ9ER60 Vat1-201ENSMUST00000040430 2766 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Scn4aQ9ER60 Gm22323-201ENSMUST00000103832 109 ntBASIC20.18■□□□□ 0.82
Scn4aQ9ER60 Rhox7-ps1-201ENSMUST00000117595 806 ntBASIC20.18■□□□□ 0.82
Scn4aQ9ER60 Ict1os-201ENSMUST00000125653 1052 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Scn4aQ9ER60 Gm6944-201ENSMUST00000182449 1006 ntBASIC20.18■□□□□ 0.82
Scn4aQ9ER60 Tnfrsf4-201ENSMUST00000030952 1030 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Scn4aQ9ER60 Tigd3-201ENSMUST00000055911 2114 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Scn4aQ9ER60 Ddx39b-203ENSMUST00000173731 2848 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Scn4aQ9ER60 Il3ra-203ENSMUST00000224163 2315 ntAPPRIS P2 BASIC20.18■□□□□ 0.82
Scn4aQ9ER60 Acp5-202ENSMUST00000115315 1349 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
Scn4aQ9ER60 Tmem80-204ENSMUST00000128906 1387 ntTSL 2 BASIC20.18■□□□□ 0.82
Scn4aQ9ER60 Gulp1-203ENSMUST00000160854 1399 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Scn4aQ9ER60 Fbxo5-201ENSMUST00000019907 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Scn4aQ9ER60 H2-D1-202ENSMUST00000172785 2102 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Scn4aQ9ER60 Ank3-223ENSMUST00000182557 1569 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Scn4aQ9ER60 Panx2-203ENSMUST00000162424 3391 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Scn4aQ9ER60 Uqcrq-203ENSMUST00000109021 405 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Scn4aQ9ER60 Arpc3-203ENSMUST00000111713 708 ntTSL 3 BASIC20.18■□□□□ 0.82
Scn4aQ9ER60 Fbxw4-203ENSMUST00000160003 387 ntTSL 3 BASIC20.18■□□□□ 0.82
Scn4aQ9ER60 Tmcc1-205ENSMUST00000173031 1024 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Scn4aQ9ER60 Ccdc159-204ENSMUST00000216710 1126 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
Scn4aQ9ER60 Gm17823-201ENSMUST00000217830 1006 ntBASIC20.18■□□□□ 0.82
Scn4aQ9ER60 Gm867-202ENSMUST00000219979 714 ntAPPRIS P1 TSL 3 BASIC20.18■□□□□ 0.82
Scn4aQ9ER60 AC154806.6-201ENSMUST00000228192 202 ntBASIC20.18■□□□□ 0.82
Scn4aQ9ER60 Cant1-204ENSMUST00000106288 2873 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
Scn4aQ9ER60 Pank2-204ENSMUST00000150843 4266 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Scn4aQ9ER60 Ndor1-202ENSMUST00000114349 2336 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Scn4aQ9ER60 Zscan12-202ENSMUST00000099720 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Scn4aQ9ER60 Gm2788-204ENSMUST00000209288 1966 ntTSL 5 BASIC20.17■□□□□ 0.82
Scn4aQ9ER60 Ggh-201ENSMUST00000098242 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Scn4aQ9ER60 Arl6-202ENSMUST00000099646 1554 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Scn4aQ9ER60 Serpinf1-201ENSMUST00000000769 1832 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Scn4aQ9ER60 Igbp1b-201ENSMUST00000054786 1456 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
Scn4aQ9ER60 Rhox2c-201ENSMUST00000115190 762 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
Scn4aQ9ER60 Sbk3-201ENSMUST00000133272 1086 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
Scn4aQ9ER60 Men1-210ENSMUST00000166909 295 ntTSL 3 BASIC20.17■□□□□ 0.82
Scn4aQ9ER60 Plekhf2-201ENSMUST00000054776 2977 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Scn4aQ9ER60 Txnl1-201ENSMUST00000025476 2558 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Scn4aQ9ER60 Atp1b1-201ENSMUST00000027863 2580 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Scn4aQ9ER60 Sept1-202ENSMUST00000106314 1486 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
Scn4aQ9ER60 Wnt5b-202ENSMUST00000118120 2115 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Scn4aQ9ER60 Gm13461-201ENSMUST00000120980 662 ntBASIC20.16■□□□□ 0.82
Scn4aQ9ER60 Platr29-201ENSMUST00000130022 830 ntTSL 5 BASIC20.16■□□□□ 0.82
Scn4aQ9ER60 C330013E15Rik-201ENSMUST00000181034 878 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Scn4aQ9ER60 Olfr286-202ENSMUST00000205305 969 ntBASIC20.16■□□□□ 0.82
Scn4aQ9ER60 Gm45865-201ENSMUST00000211815 945 ntBASIC20.16■□□□□ 0.82
Scn4aQ9ER60 Mgat1-201ENSMUST00000081794 2976 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Scn4aQ9ER60 Wdr83-201ENSMUST00000093357 1238 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Scn4aQ9ER60 Lmtk3-201ENSMUST00000072580 4807 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
Scn4aQ9ER60 Celf4-206ENSMUST00000224553 1729 ntBASIC20.16■□□□□ 0.82
Scn4aQ9ER60 Trim26-202ENSMUST00000123715 1406 ntTSL 5 BASIC20.16■□□□□ 0.82
Scn4aQ9ER60 Gm10435-202ENSMUST00000162526 2878 ntTSL 5 BASIC20.16■□□□□ 0.82
Scn4aQ9ER60 Xxylt1-201ENSMUST00000055389 2987 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Scn4aQ9ER60 Cd27-203ENSMUST00000112282 588 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Scn4aQ9ER60 Gm15240-201ENSMUST00000118156 720 ntBASIC20.16■□□□□ 0.82
Scn4aQ9ER60 Prss41-202ENSMUST00000122936 1088 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
Scn4aQ9ER60 Gm11210-201ENSMUST00000150203 422 ntTSL 3 BASIC20.16■□□□□ 0.82
Scn4aQ9ER60 Rsf1os2-203ENSMUST00000155074 998 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Scn4aQ9ER60 Gm8810-201ENSMUST00000172895 754 ntBASIC20.16■□□□□ 0.82
Scn4aQ9ER60 Gm44632-201ENSMUST00000207245 474 ntTSL 2 BASIC20.16■□□□□ 0.82
Scn4aQ9ER60 Gm5425-201ENSMUST00000214125 459 ntBASIC20.16■□□□□ 0.82
Scn4aQ9ER60 Tssc1-207ENSMUST00000222407 489 ntTSL 3 BASIC20.16■□□□□ 0.82
Scn4aQ9ER60 Treml1-204ENSMUST00000224001 1220 ntAPPRIS P2 BASIC20.16■□□□□ 0.82
Scn4aQ9ER60 Hook2-201ENSMUST00000064495 2580 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Scn4aQ9ER60 Crtac1-201ENSMUST00000048630 2616 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Scn4aQ9ER60 Mis12-206ENSMUST00000164220 1416 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Scn4aQ9ER60 Lrch2-201ENSMUST00000112819 4892 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
Scn4aQ9ER60 Fam133b-205ENSMUST00000197082 1943 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
Scn4aQ9ER60 AI467606-201ENSMUST00000056288 1932 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Scn4aQ9ER60 Tmem108-204ENSMUST00000189588 2850 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Scn4aQ9ER60 Emx2-201ENSMUST00000062216 2916 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Scn4aQ9ER60 Exog-202ENSMUST00000164213 2627 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Scn4aQ9ER60 Gm10339-203ENSMUST00000225409 1671 ntBASIC20.15■□□□□ 0.82
Scn4aQ9ER60 Ercc1-203ENSMUST00000160369 1175 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Scn4aQ9ER60 1700092C10Rik-201ENSMUST00000172547 585 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Scn4aQ9ER60 Gm27331-201ENSMUST00000183705 60 ntBASIC20.15■□□□□ 0.82
Scn4aQ9ER60 Mir7032-201ENSMUST00000185154 79 ntBASIC20.15■□□□□ 0.82
Scn4aQ9ER60 Dap-204ENSMUST00000186425 597 ntTSL 3 BASIC20.15■□□□□ 0.82
Scn4aQ9ER60 Atp6v0c-ps1-201ENSMUST00000206596 463 ntBASIC20.15■□□□□ 0.82
Scn4aQ9ER60 Cby3-201ENSMUST00000052596 703 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Scn4aQ9ER60 Gm5161-201ENSMUST00000075243 853 ntBASIC20.15■□□□□ 0.82
Scn4aQ9ER60 Sirt5-203ENSMUST00000220576 1579 ntTSL 5 BASIC20.15■□□□□ 0.82
Scn4aQ9ER60 Elk4-201ENSMUST00000027696 1586 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Scn4aQ9ER60 Ip6k2-206ENSMUST00000193560 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.82
Scn4aQ9ER60 Zc3h14-203ENSMUST00000110104 3146 ntTSL 5 BASIC20.14■□□□□ 0.82
Scn4aQ9ER60 Rbpms-213ENSMUST00000191473 2547 ntTSL 1 (best) BASIC20.14■□□□□ 0.82
Retrieved 100 of 76,532 protein–RNA pairs in 38.1 ms