Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Rhd-201ENSMUST00000030627 1514 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Cdc40Q9DC48 Slc24a3-202ENSMUST00000110007 4048 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
Cdc40Q9DC48 Cdc42se2-201ENSMUST00000064104 3069 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Cdc40Q9DC48 Ldha-210ENSMUST00000209984 1815 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Cdc40Q9DC48 Pacs2-201ENSMUST00000084891 5480 ntAPPRIS P2 TSL 5 BASIC13.99□□□□□ -0.17
Cdc40Q9DC48 Tmem81-202ENSMUST00000188789 1751 ntAPPRIS P1 BASIC13.99□□□□□ -0.17
Cdc40Q9DC48 Gm11873-201ENSMUST00000117877 1304 ntBASIC13.99□□□□□ -0.17
Cdc40Q9DC48 Hs3st3a1-201ENSMUST00000058652 3939 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Cdc40Q9DC48 Chst3-203ENSMUST00000167915 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
Cdc40Q9DC48 Efcab14-204ENSMUST00000106525 2792 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
Cdc40Q9DC48 Nkain4-202ENSMUST00000108873 865 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
Cdc40Q9DC48 Gm2308-201ENSMUST00000166539 1004 ntBASIC13.99□□□□□ -0.17
Cdc40Q9DC48 2010107E04Rik-203ENSMUST00000222874 612 ntAPPRIS P1 TSL 2 BASIC13.99□□□□□ -0.17
Cdc40Q9DC48 Eif4g1-204ENSMUST00000115460 5638 ntAPPRIS P3 TSL 5 BASIC13.99□□□□□ -0.17
Cdc40Q9DC48 Supt5-208ENSMUST00000209141 3755 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Cdc40Q9DC48 Wfikkn1-201ENSMUST00000095487 1981 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Cdc40Q9DC48 Endod1-201ENSMUST00000167549 4470 ntAPPRIS P2 TSL 1 (best) BASIC13.99□□□□□ -0.17
Cdc40Q9DC48 P2ry2-206ENSMUST00000208340 2693 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Cdc40Q9DC48 Fgf9-201ENSMUST00000022545 1593 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Cdc40Q9DC48 Reep4-201ENSMUST00000047218 1565 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Cdc40Q9DC48 Per1-201ENSMUST00000021271 4671 ntAPPRIS P2 TSL 1 (best) BASIC13.99□□□□□ -0.17
Cdc40Q9DC48 Myrf-202ENSMUST00000186056 3636 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
Cdc40Q9DC48 Vapb-201ENSMUST00000067530 7029 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Cdc40Q9DC48 Klf15-204ENSMUST00000203607 2240 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Cdc40Q9DC48 Erf-201ENSMUST00000045847 3505 ntAPPRIS P2 TSL 1 (best) BASIC13.99□□□□□ -0.17
Cdc40Q9DC48 Insc-201ENSMUST00000117543 2170 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
Cdc40Q9DC48 Gm37812-201ENSMUST00000195216 2475 ntBASIC13.99□□□□□ -0.17
Cdc40Q9DC48 Gtdc1-202ENSMUST00000100127 2422 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Cdc40Q9DC48 Gm13074-201ENSMUST00000124848 2735 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Cdc40Q9DC48 Arhgap44-203ENSMUST00000093002 3982 ntAPPRIS ALT2 TSL 5 BASIC13.98□□□□□ -0.17
Cdc40Q9DC48 Adipor1-202ENSMUST00000112237 3446 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Cdc40Q9DC48 Cyp2d10-201ENSMUST00000072776 1647 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Cdc40Q9DC48 A830018L16Rik-201ENSMUST00000048613 2779 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
Cdc40Q9DC48 Adam15-202ENSMUST00000074582 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
Cdc40Q9DC48 Galt-202ENSMUST00000108038 1859 ntAPPRIS ALT2 TSL 2 BASIC13.98□□□□□ -0.17
Cdc40Q9DC48 Sigirr-206ENSMUST00000210167 1897 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
Cdc40Q9DC48 Errfi1-201ENSMUST00000030811 3043 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Cdc40Q9DC48 Retsat-204ENSMUST00000176168 1203 ntTSL 5 BASIC13.98□□□□□ -0.17
Cdc40Q9DC48 Gm26664-201ENSMUST00000181140 705 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Cdc40Q9DC48 Gm27177-205ENSMUST00000184792 706 ntTSL 5 BASIC13.98□□□□□ -0.17
Cdc40Q9DC48 Ighv1-15-201ENSMUST00000192077 351 ntAPPRIS P1 BASIC13.98□□□□□ -0.17
Cdc40Q9DC48 1700030N18Rik-201ENSMUST00000202497 966 ntBASIC13.98□□□□□ -0.17
Cdc40Q9DC48 Frmd5-213ENSMUST00000212518 922 ntTSL 5 BASIC13.98□□□□□ -0.17
Cdc40Q9DC48 AC151836.1-202ENSMUST00000226259 753 ntBASIC13.98□□□□□ -0.17
Cdc40Q9DC48 Ndufs8-201ENSMUST00000075092 963 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Cdc40Q9DC48 Nap1l5-201ENSMUST00000059539 1844 ntAPPRIS P1 BASIC13.98□□□□□ -0.17
Cdc40Q9DC48 Ppt1-201ENSMUST00000030412 2381 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Cdc40Q9DC48 Gm16279-201ENSMUST00000149452 2945 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Cdc40Q9DC48 Car7-201ENSMUST00000056051 1538 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Cdc40Q9DC48 Ppip5k2-201ENSMUST00000042509 5882 ntAPPRIS P2 TSL 1 (best) BASIC13.98□□□□□ -0.17
Cdc40Q9DC48 Cds1-201ENSMUST00000031273 3924 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Cdc40Q9DC48 4930431F12Rik-202ENSMUST00000199309 2263 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Cdc40Q9DC48 Gpd1l-204ENSMUST00000146623 4391 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Cdc40Q9DC48 Myh14-201ENSMUST00000048102 6457 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
Cdc40Q9DC48 Esr1-202ENSMUST00000105588 2733 ntTSL 5 BASIC13.98□□□□□ -0.17
Cdc40Q9DC48 Elmo2-203ENSMUST00000094329 3466 ntAPPRIS P2 TSL 1 (best) BASIC13.98□□□□□ -0.17
Cdc40Q9DC48 Slc35c1-202ENSMUST00000125276 2668 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Cdc40Q9DC48 Wt1-201ENSMUST00000111098 2395 ntTSL 5 BASIC13.97□□□□□ -0.17
Cdc40Q9DC48 Zkscan3-203ENSMUST00000116434 2600 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Cdc40Q9DC48 Ccdc158-204ENSMUST00000151180 3352 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Cdc40Q9DC48 Ddx49-201ENSMUST00000008004 2137 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Cdc40Q9DC48 Hs3st5-201ENSMUST00000058738 3078 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Cdc40Q9DC48 Narfl-201ENSMUST00000002350 2555 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Cdc40Q9DC48 Dlat-201ENSMUST00000034567 4035 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Cdc40Q9DC48 Fnip2-201ENSMUST00000076136 3775 ntAPPRIS P2 TSL 5 BASIC13.97□□□□□ -0.17
Cdc40Q9DC48 Mettl22-201ENSMUST00000046470 1825 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Cdc40Q9DC48 Iqcd-201ENSMUST00000069259 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
Cdc40Q9DC48 Echdc2-201ENSMUST00000052999 1307 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Cdc40Q9DC48 Kif12-205ENSMUST00000156618 2258 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
Cdc40Q9DC48 Slc22a7-201ENSMUST00000087012 2007 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Cdc40Q9DC48 Atxn7-202ENSMUST00000223714 2954 ntAPPRIS ALT2 BASIC13.97□□□□□ -0.17
Cdc40Q9DC48 Atp13a3-201ENSMUST00000061350 7220 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
Cdc40Q9DC48 6530402F18Rik-203ENSMUST00000155949 4301 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Cdc40Q9DC48 Cdkn1a-203ENSMUST00000122348 857 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Cdc40Q9DC48 Tex30-206ENSMUST00000133677 935 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Cdc40Q9DC48 Mrpl54-201ENSMUST00000046114 604 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Cdc40Q9DC48 9430038I01Rik-201ENSMUST00000068996 1126 ntAPPRIS P2 TSL 1 (best) BASIC13.97□□□□□ -0.17
Cdc40Q9DC48 Matk-203ENSMUST00000119547 1916 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
Cdc40Q9DC48 Ppip5k2-202ENSMUST00000112845 6239 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
Cdc40Q9DC48 Ntng2-210ENSMUST00000177689 1679 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
Cdc40Q9DC48 Zswim8-204ENSMUST00000223840 5674 ntAPPRIS ALT2 BASIC13.97□□□□□ -0.17
Cdc40Q9DC48 BC005537-201ENSMUST00000019276 5849 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Cdc40Q9DC48 Furin-203ENSMUST00000122232 4286 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Cdc40Q9DC48 Zfp786-201ENSMUST00000058844 3191 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Cdc40Q9DC48 Cd151-201ENSMUST00000058746 1619 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Cdc40Q9DC48 Sgcd-201ENSMUST00000077221 1617 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Cdc40Q9DC48 Gfm2-211ENSMUST00000161913 1829 ntTSL 2 BASIC13.97□□□□□ -0.17
Cdc40Q9DC48 Ocln-205ENSMUST00000160859 2443 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Cdc40Q9DC48 Ccdc154-201ENSMUST00000073277 2417 ntAPPRIS ALT2 TSL 5 BASIC13.96□□□□□ -0.17
Cdc40Q9DC48 Dido1-202ENSMUST00000087517 8723 ntAPPRIS P4 TSL 1 (best) BASIC13.96□□□□□ -0.17
Cdc40Q9DC48 Gm5648-201ENSMUST00000122244 1587 ntBASIC13.96□□□□□ -0.17
Cdc40Q9DC48 Frmd4b-203ENSMUST00000113355 4913 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
Cdc40Q9DC48 C2cd2l-206ENSMUST00000214602 2808 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
Cdc40Q9DC48 Setd1b-206ENSMUST00000174836 7515 ntAPPRIS ALT2 TSL 5 BASIC13.96□□□□□ -0.17
Cdc40Q9DC48 Pld2-202ENSMUST00000108556 3391 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
Cdc40Q9DC48 Plcxd1-201ENSMUST00000086687 1346 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Cdc40Q9DC48 Yipf5-201ENSMUST00000025364 2329 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Cdc40Q9DC48 Tgfa-201ENSMUST00000032066 4527 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Cdc40Q9DC48 Grin3b-201ENSMUST00000045085 3283 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Cdc40Q9DC48 Med20-201ENSMUST00000024778 2054 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Retrieved 100 of 76,532 protein–RNA pairs in 31.4 ms