Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Tbp-202ENSMUST00000117593 2067 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Upf3aQ3ULJ3 Slc6a11-201ENSMUST00000032451 4132 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Upf3aQ3ULJ3 Tmem269-202ENSMUST00000212054 1504 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
Upf3aQ3ULJ3 Sync-201ENSMUST00000102599 2042 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Upf3aQ3ULJ3 Col4a3bp-203ENSMUST00000179226 3040 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
Upf3aQ3ULJ3 Adam23-201ENSMUST00000087374 6426 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
Upf3aQ3ULJ3 Fbxl21-203ENSMUST00000121871 1963 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
Upf3aQ3ULJ3 Fbxo5-201ENSMUST00000019907 1940 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Upf3aQ3ULJ3 Ptbp2-213ENSMUST00000200097 3777 ntAPPRIS ALT1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Upf3aQ3ULJ3 Zfp219-212ENSMUST00000228580 2812 ntAPPRIS ALT2 BASIC15.78■□□□□ 0.12
Upf3aQ3ULJ3 Ubl4b-201ENSMUST00000052853 1387 ntAPPRIS P1 BASIC15.78■□□□□ 0.12
Upf3aQ3ULJ3 Rcor1-202ENSMUST00000116388 2720 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
Upf3aQ3ULJ3 BC030336-201ENSMUST00000060175 4831 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Upf3aQ3ULJ3 Sept4-201ENSMUST00000018544 1726 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
Upf3aQ3ULJ3 Nes-203ENSMUST00000160694 5958 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
Upf3aQ3ULJ3 Apip-201ENSMUST00000011055 919 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Upf3aQ3ULJ3 Gm14767-201ENSMUST00000121559 586 ntBASIC15.78■□□□□ 0.12
Upf3aQ3ULJ3 Gm27680-201ENSMUST00000184192 160 ntBASIC15.78■□□□□ 0.12
Upf3aQ3ULJ3 AC140375.2-201ENSMUST00000225283 584 ntBASIC15.78■□□□□ 0.12
Upf3aQ3ULJ3 Smim8-201ENSMUST00000029972 786 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Upf3aQ3ULJ3 Sh2b1-202ENSMUST00000205340 3366 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
Upf3aQ3ULJ3 Tcf3-203ENSMUST00000105339 2096 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
Upf3aQ3ULJ3 Chst8-204ENSMUST00000205259 1980 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
Upf3aQ3ULJ3 Mbl1-202ENSMUST00000225792 1563 ntAPPRIS P1 BASIC15.78■□□□□ 0.12
Upf3aQ3ULJ3 Chp2-201ENSMUST00000033152 1456 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Upf3aQ3ULJ3 Osbpl1a-206ENSMUST00000121774 2931 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
Upf3aQ3ULJ3 Appl1-201ENSMUST00000036570 7642 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Upf3aQ3ULJ3 Cd5-201ENSMUST00000025571 2069 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Upf3aQ3ULJ3 Celf4-206ENSMUST00000224553 1729 ntBASIC15.77■□□□□ 0.12
Upf3aQ3ULJ3 Patz1-205ENSMUST00000110043 3702 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.12
Upf3aQ3ULJ3 Gpr137b-201ENSMUST00000021738 2971 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Upf3aQ3ULJ3 Hbs1l-203ENSMUST00000092674 2625 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
Upf3aQ3ULJ3 Enah-202ENSMUST00000111024 3572 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.12
Upf3aQ3ULJ3 Glis1-201ENSMUST00000046005 2906 ntAPPRIS P2 TSL 1 (best) BASIC15.77■□□□□ 0.12
Upf3aQ3ULJ3 Gldnos-201ENSMUST00000149237 841 ntTSL 2 BASIC15.77■□□□□ 0.12
Upf3aQ3ULJ3 Gm27533-201ENSMUST00000183800 152 ntBASIC15.77■□□□□ 0.12
Upf3aQ3ULJ3 Gm37596-201ENSMUST00000193565 1021 ntAPPRIS P1 BASIC15.77■□□□□ 0.12
Upf3aQ3ULJ3 Pspn-201ENSMUST00000002740 474 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Upf3aQ3ULJ3 Gstp2-201ENSMUST00000042700 770 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Upf3aQ3ULJ3 Myoz3-201ENSMUST00000056533 870 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Upf3aQ3ULJ3 Teddm2-202ENSMUST00000123490 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.11
Upf3aQ3ULJ3 Mdga1-208ENSMUST00000171691 8339 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.11
Upf3aQ3ULJ3 Twf2-204ENSMUST00000188650 1508 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
Upf3aQ3ULJ3 Nap1l1-208ENSMUST00000219961 1512 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
Upf3aQ3ULJ3 Chrna4-201ENSMUST00000067120 4565 ntAPPRIS P2 TSL 1 (best) BASIC15.77■□□□□ 0.11
Upf3aQ3ULJ3 4930448E22Rik-202ENSMUST00000215242 2102 ntTSL 5 BASIC15.77■□□□□ 0.11
Upf3aQ3ULJ3 Osr1-201ENSMUST00000057021 2012 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
Upf3aQ3ULJ3 Fbxl7-201ENSMUST00000059204 4632 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
Upf3aQ3ULJ3 Tmem82-201ENSMUST00000053263 1671 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Upf3aQ3ULJ3 Plekhb1-207ENSMUST00000116287 1911 ntAPPRIS ALT1 TSL 3 BASIC15.76■□□□□ 0.11
Upf3aQ3ULJ3 Psmd8-202ENSMUST00000182328 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
Upf3aQ3ULJ3 Prelid3a-201ENSMUST00000025411 2167 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Upf3aQ3ULJ3 Chst5-201ENSMUST00000034430 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Upf3aQ3ULJ3 Gal3st1-203ENSMUST00000109981 1600 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Upf3aQ3ULJ3 Sphk1-204ENSMUST00000106386 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
Upf3aQ3ULJ3 Hap1-201ENSMUST00000103124 2120 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
Upf3aQ3ULJ3 Simc1-201ENSMUST00000118072 2116 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
Upf3aQ3ULJ3 Gabrb3-201ENSMUST00000039697 5579 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Upf3aQ3ULJ3 Snap91-204ENSMUST00000098495 4150 ntAPPRIS P4 TSL 1 (best) BASIC15.76■□□□□ 0.11
Upf3aQ3ULJ3 Mettl22-201ENSMUST00000046470 1825 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Upf3aQ3ULJ3 Fbxl12os-202ENSMUST00000136376 2349 ntTSL 2 BASIC15.76■□□□□ 0.11
Upf3aQ3ULJ3 4930474N05Rik-203ENSMUST00000226305 2313 ntAPPRIS P1 BASIC15.76■□□□□ 0.11
Upf3aQ3ULJ3 H2-Pa-201ENSMUST00000182803 626 ntBASIC15.76■□□□□ 0.11
Upf3aQ3ULJ3 Gm32351-201ENSMUST00000220503 438 ntTSL 5 BASIC15.76■□□□□ 0.11
Upf3aQ3ULJ3 Clec4g-202ENSMUST00000062037 1242 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Upf3aQ3ULJ3 2900055J20Rik-201ENSMUST00000096572 723 ntAPPRIS P1 BASIC15.76■□□□□ 0.11
Upf3aQ3ULJ3 Pde8b-201ENSMUST00000022192 2517 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
Upf3aQ3ULJ3 Hsd3b7-202ENSMUST00000106271 1713 ntTSL 5 BASIC15.76■□□□□ 0.11
Upf3aQ3ULJ3 Mdp1-201ENSMUST00000002400 1733 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Upf3aQ3ULJ3 Slc35f1-201ENSMUST00000105473 4941 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Upf3aQ3ULJ3 Nes-201ENSMUST00000090973 6126 ntAPPRIS P2 TSL 1 (best) BASIC15.76■□□□□ 0.11
Upf3aQ3ULJ3 4930556H04Rik-201ENSMUST00000222451 1675 ntBASIC15.76■□□□□ 0.11
Upf3aQ3ULJ3 Gramd3-201ENSMUST00000070166 2605 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Upf3aQ3ULJ3 Aste1-202ENSMUST00000123807 2349 ntAPPRIS ALT2 TSL 2 BASIC15.76■□□□□ 0.11
Upf3aQ3ULJ3 Bcor-204ENSMUST00000115513 6941 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
Upf3aQ3ULJ3 Serhl-201ENSMUST00000078218 1371 ntAPPRIS P2 TSL 1 (best) BASIC15.75■□□□□ 0.11
Upf3aQ3ULJ3 Rerg-202ENSMUST00000117919 2262 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Upf3aQ3ULJ3 Gm36445-203ENSMUST00000209951 1597 ntTSL 5 BASIC15.75■□□□□ 0.11
Upf3aQ3ULJ3 Slc35a1-201ENSMUST00000029970 2039 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Upf3aQ3ULJ3 Gadd45gip1-201ENSMUST00000036734 2494 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Upf3aQ3ULJ3 Gnb1-201ENSMUST00000030940 3131 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Upf3aQ3ULJ3 Ikbke-204ENSMUST00000161764 2867 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
Upf3aQ3ULJ3 1700113H08Rik-201ENSMUST00000169849 1332 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
Upf3aQ3ULJ3 Chrd-202ENSMUST00000115423 2417 ntTSL 2 BASIC15.75■□□□□ 0.11
Upf3aQ3ULJ3 Atp1a1-201ENSMUST00000036493 3679 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Upf3aQ3ULJ3 Rhot1-201ENSMUST00000017831 3029 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
Upf3aQ3ULJ3 B9d1-201ENSMUST00000102657 817 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Upf3aQ3ULJ3 Gm13823-201ENSMUST00000119930 345 ntBASIC15.75■□□□□ 0.11
Upf3aQ3ULJ3 Tm9sf1-203ENSMUST00000121791 2148 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
Upf3aQ3ULJ3 Smim22-206ENSMUST00000184256 381 ntTSL 3 BASIC15.75■□□□□ 0.11
Upf3aQ3ULJ3 5430431A17Rik-201ENSMUST00000206342 795 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
Upf3aQ3ULJ3 Gm7775-201ENSMUST00000218871 853 ntBASIC15.75■□□□□ 0.11
Upf3aQ3ULJ3 Haus1-201ENSMUST00000048192 1004 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Upf3aQ3ULJ3 Sprn-201ENSMUST00000059241 3374 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Upf3aQ3ULJ3 Entpd6-201ENSMUST00000094467 2540 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Upf3aQ3ULJ3 Cbx8-201ENSMUST00000026663 3580 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Upf3aQ3ULJ3 Pde8b-214ENSMUST00000172104 2493 ntAPPRIS ALT2 TSL 5 BASIC15.75■□□□□ 0.11
Upf3aQ3ULJ3 Ecel1-203ENSMUST00000160810 2898 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Upf3aQ3ULJ3 Fam214a-202ENSMUST00000170846 4355 ntAPPRIS ALT2 TSL 5 BASIC15.75■□□□□ 0.11
Upf3aQ3ULJ3 Gm2788-204ENSMUST00000209288 1966 ntTSL 5 BASIC15.75■□□□□ 0.11
Retrieved 100 of 76,532 protein–RNA pairs in 22.6 ms