Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Oaz2-204ENSMUST00000136166 700 ntTSL 5 BASIC18.98■□□□□ 0.63
Ddb1Q3U1J4 Klk12-201ENSMUST00000014063 924 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Ddb1Q3U1J4 Gm11535-201ENSMUST00000145517 778 ntTSL 3 BASIC18.98■□□□□ 0.63
Ddb1Q3U1J4 Tex30-211ENSMUST00000150911 960 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
Ddb1Q3U1J4 Olfr455-201ENSMUST00000171307 954 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
Ddb1Q3U1J4 Gm9002-201ENSMUST00000178437 499 ntBASIC18.98■□□□□ 0.63
Ddb1Q3U1J4 1700022A21Rik-201ENSMUST00000182745 1051 ntBASIC18.98■□□□□ 0.63
Ddb1Q3U1J4 Gm30934-201ENSMUST00000215803 815 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
Ddb1Q3U1J4 Bccip-201ENSMUST00000033282 1244 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Ddb1Q3U1J4 Smim11-201ENSMUST00000063641 517 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Ddb1Q3U1J4 Mpp3-201ENSMUST00000062801 2848 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Ddb1Q3U1J4 Slco3a1-202ENSMUST00000098371 2709 ntAPPRIS ALT1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Ddb1Q3U1J4 Trim7-202ENSMUST00000109213 2356 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
Ddb1Q3U1J4 Pola2-202ENSMUST00000165143 2397 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
Ddb1Q3U1J4 Matn1-201ENSMUST00000102576 2001 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Ddb1Q3U1J4 Gm5105-201ENSMUST00000053318 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Ddb1Q3U1J4 Nsmf-207ENSMUST00000116574 2863 ntTSL 5 BASIC18.98■□□□□ 0.63
Ddb1Q3U1J4 Fbxo5-201ENSMUST00000019907 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Ddb1Q3U1J4 Mospd3-202ENSMUST00000111007 1318 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Ddb1Q3U1J4 Ephx3-202ENSMUST00000162117 1590 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
Ddb1Q3U1J4 Mterf1a-202ENSMUST00000117463 2413 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Ddb1Q3U1J4 Kmt5b-202ENSMUST00000052699 3290 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
Ddb1Q3U1J4 Ispd-201ENSMUST00000062041 2690 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
Ddb1Q3U1J4 Akap8l-201ENSMUST00000050214 2075 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Ddb1Q3U1J4 Zfp683-201ENSMUST00000105884 1471 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
Ddb1Q3U1J4 Chtf8-202ENSMUST00000175940 2890 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Ddb1Q3U1J4 Bhlhe41-201ENSMUST00000032386 6133 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Ddb1Q3U1J4 Rabggta-203ENSMUST00000169237 2547 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Ddb1Q3U1J4 Zswim8-201ENSMUST00000022358 6073 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
Ddb1Q3U1J4 Asb10-203ENSMUST00000119657 1536 ntTSL 5 BASIC18.97■□□□□ 0.63
Ddb1Q3U1J4 Nme1-202ENSMUST00000107844 452 ntTSL 3 BASIC18.97■□□□□ 0.63
Ddb1Q3U1J4 Unc50-202ENSMUST00000114925 1094 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Ddb1Q3U1J4 Crybb3-203ENSMUST00000118226 892 ntAPPRIS P1 TSL 3 BASIC18.97■□□□□ 0.63
Ddb1Q3U1J4 Gm11425-201ENSMUST00000119608 498 ntBASIC18.97■□□□□ 0.63
Ddb1Q3U1J4 Rpl12-203ENSMUST00000126610 1242 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Ddb1Q3U1J4 Gm11574-201ENSMUST00000139752 946 ntTSL 5 BASIC18.97■□□□□ 0.63
Ddb1Q3U1J4 Gm5035-201ENSMUST00000215581 927 ntBASIC18.97■□□□□ 0.63
Ddb1Q3U1J4 AC165157.4-201ENSMUST00000220587 139 ntBASIC18.97■□□□□ 0.63
Ddb1Q3U1J4 AC159006.1-201ENSMUST00000226396 258 ntBASIC18.97■□□□□ 0.63
Ddb1Q3U1J4 Ins1-201ENSMUST00000039652 1016 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Ddb1Q3U1J4 Gstm1-201ENSMUST00000004140 1289 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Ddb1Q3U1J4 Crybb3-201ENSMUST00000076069 816 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Ddb1Q3U1J4 Gm9396-201ENSMUST00000076703 567 ntBASIC18.97■□□□□ 0.63
Ddb1Q3U1J4 Coro6-205ENSMUST00000108391 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Ddb1Q3U1J4 Sigirr-201ENSMUST00000097958 1990 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
Ddb1Q3U1J4 Edem1-201ENSMUST00000089162 5817 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Ddb1Q3U1J4 Slc9a6-202ENSMUST00000114784 4449 ntTSL 5 BASIC18.97■□□□□ 0.63
Ddb1Q3U1J4 Mta1-201ENSMUST00000009099 2826 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
Ddb1Q3U1J4 Uros-203ENSMUST00000106145 1644 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Ddb1Q3U1J4 Shcbp1l-201ENSMUST00000042373 2092 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Ddb1Q3U1J4 Pdhb-201ENSMUST00000022268 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Ddb1Q3U1J4 Med7-209ENSMUST00000170928 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Ddb1Q3U1J4 Xpo4-209ENSMUST00000174545 8680 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
Ddb1Q3U1J4 Sumo2-204ENSMUST00000118155 884 ntTSL 2 BASIC18.96■□□□□ 0.63
Ddb1Q3U1J4 Rpsa-ps9-201ENSMUST00000120702 885 ntBASIC18.96■□□□□ 0.63
Ddb1Q3U1J4 Gm7820-201ENSMUST00000121012 1052 ntBASIC18.96■□□□□ 0.63
Ddb1Q3U1J4 Sec22b-203ENSMUST00000130620 640 ntTSL 2 BASIC18.96■□□□□ 0.63
Ddb1Q3U1J4 Smyd3-207ENSMUST00000194237 1047 ntTSL 2 BASIC18.96■□□□□ 0.63
Ddb1Q3U1J4 Gm42902-201ENSMUST00000199508 662 ntTSL 5 BASIC18.96■□□□□ 0.63
Ddb1Q3U1J4 Lcmt1-204ENSMUST00000206574 1286 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
Ddb1Q3U1J4 Fau-201ENSMUST00000043074 574 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Ddb1Q3U1J4 Ydjc-202ENSMUST00000115702 1713 ntTSL 5 BASIC18.96■□□□□ 0.63
Ddb1Q3U1J4 2610028D06Rik-201ENSMUST00000215216 1713 ntBASIC18.96■□□□□ 0.63
Ddb1Q3U1J4 Kdelc2-201ENSMUST00000037853 3642 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Ddb1Q3U1J4 Wrb-201ENSMUST00000023913 2495 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Ddb1Q3U1J4 Bcor-204ENSMUST00000115513 6941 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
Ddb1Q3U1J4 Tsnax-201ENSMUST00000075896 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Ddb1Q3U1J4 B3gnt6-201ENSMUST00000098278 2371 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Ddb1Q3U1J4 Ncoa5-201ENSMUST00000040381 3179 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Ddb1Q3U1J4 Eif2b1-201ENSMUST00000031334 2013 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Ddb1Q3U1J4 Ttpa-202ENSMUST00000117632 3123 ntTSL 5 BASIC18.95■□□□□ 0.62
Ddb1Q3U1J4 Celf4-206ENSMUST00000224553 1729 ntBASIC18.95■□□□□ 0.62
Ddb1Q3U1J4 Ccnh-202ENSMUST00000163600 1055 ntTSL 5 BASIC18.95■□□□□ 0.62
Ddb1Q3U1J4 Pax5-213ENSMUST00000173821 996 ntTSL 5 BASIC18.95■□□□□ 0.62
Ddb1Q3U1J4 Gm26600-201ENSMUST00000181637 1256 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Ddb1Q3U1J4 Gm6944-201ENSMUST00000182449 1006 ntBASIC18.95■□□□□ 0.62
Ddb1Q3U1J4 Blvra-201ENSMUST00000002064 1160 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Ddb1Q3U1J4 Gm9803-202ENSMUST00000216543 456 ntTSL 5 BASIC18.95■□□□□ 0.62
Ddb1Q3U1J4 Gm19220-201ENSMUST00000222682 803 ntBASIC18.95■□□□□ 0.62
Ddb1Q3U1J4 AC156016.3-201ENSMUST00000228623 344 ntBASIC18.95■□□□□ 0.62
Ddb1Q3U1J4 Eapp-201ENSMUST00000067272 590 ntTSL 3 BASIC18.95■□□□□ 0.62
Ddb1Q3U1J4 Tada3-203ENSMUST00000099118 1282 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Ddb1Q3U1J4 Pspc1-202ENSMUST00000163924 2863 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
Ddb1Q3U1J4 Il4i1-202ENSMUST00000118125 2275 ntAPPRIS ALT2 TSL 2 BASIC18.95■□□□□ 0.62
Ddb1Q3U1J4 Nfe2l2-201ENSMUST00000102672 2475 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Ddb1Q3U1J4 Fbrsl1-202ENSMUST00000069483 4720 ntAPPRIS P2 TSL 5 BASIC18.95■□□□□ 0.62
Ddb1Q3U1J4 Parg-208ENSMUST00000170840 2894 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
Ddb1Q3U1J4 Lrrc58-201ENSMUST00000078717 8604 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Ddb1Q3U1J4 Higd1a-201ENSMUST00000060251 2232 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Ddb1Q3U1J4 Pard3-226ENSMUST00000162907 4682 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Ddb1Q3U1J4 Pkn1-201ENSMUST00000005616 6662 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
Ddb1Q3U1J4 Plekha4-207ENSMUST00000211227 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Ddb1Q3U1J4 Fars2-201ENSMUST00000021857 2125 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Ddb1Q3U1J4 Mmp11-202ENSMUST00000120281 1793 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Ddb1Q3U1J4 Zic4-209ENSMUST00000173933 1764 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
Ddb1Q3U1J4 Agtr1a-201ENSMUST00000066412 2199 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Ddb1Q3U1J4 Gm45799-201ENSMUST00000106785 367 ntAPPRIS ALT2 TSL 3 BASIC18.94■□□□□ 0.62
Ddb1Q3U1J4 Mvk-203ENSMUST00000124260 1051 ntTSL 5 BASIC18.94■□□□□ 0.62
Ddb1Q3U1J4 Pax8-208ENSMUST00000153601 1226 ntTSL 5 BASIC18.94■□□□□ 0.62
Ddb1Q3U1J4 Gm29585-201ENSMUST00000185270 514 ntTSL 5 BASIC18.94■□□□□ 0.62
Retrieved 100 of 76,532 protein–RNA pairs in 24.1 ms