Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Mrpl20-201ENSMUST00000030942 764 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Msx1P13297 Rpl8-201ENSMUST00000004072 862 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Msx1P13297 Krtap19-4-201ENSMUST00000051103 304 ntAPPRIS P1 BASIC14.27□□□□□ -0.13
Msx1P13297 Acbd5-203ENSMUST00000114526 3725 ntAPPRIS P4 TSL 1 (best) BASIC14.27□□□□□ -0.13
Msx1P13297 Map4-201ENSMUST00000035055 6091 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
Msx1P13297 Ccdc158-204ENSMUST00000151180 3352 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Msx1P13297 Mapk7-201ENSMUST00000079080 3019 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Msx1P13297 Gm16279-201ENSMUST00000149452 2945 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Msx1P13297 Pitpna-203ENSMUST00000143219 3761 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.13
Msx1P13297 Hsd17b4-201ENSMUST00000025385 2684 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Msx1P13297 Tdrd6-201ENSMUST00000045717 7055 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
Msx1P13297 Zfp12-201ENSMUST00000032591 5265 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
Msx1P13297 St6gal2-201ENSMUST00000025000 6066 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.13
Msx1P13297 Tcf25-205ENSMUST00000212470 2572 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Msx1P13297 Chst3-203ENSMUST00000167915 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Msx1P13297 Ntng2-210ENSMUST00000177689 1679 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
Msx1P13297 Ube2d3-208ENSMUST00000197134 2493 ntAPPRIS ALT1 TSL 5 BASIC14.26□□□□□ -0.13
Msx1P13297 Bcam-201ENSMUST00000003061 2429 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Msx1P13297 Jup-202ENSMUST00000107403 2386 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
Msx1P13297 Gm26547-201ENSMUST00000181186 1508 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Msx1P13297 Tnfaip2-201ENSMUST00000102745 3762 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Msx1P13297 Itsn1-202ENSMUST00000064797 7418 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
Msx1P13297 Gm15939-201ENSMUST00000160756 2147 ntTSL 5 BASIC14.26□□□□□ -0.13
Msx1P13297 Gba2-201ENSMUST00000030189 3544 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Msx1P13297 Zfp395-201ENSMUST00000066994 4229 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Msx1P13297 Adam15-202ENSMUST00000074582 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Msx1P13297 Hoxb1-201ENSMUST00000019117 2086 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Msx1P13297 Sema6d-201ENSMUST00000051419 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Msx1P13297 Fignl2-202ENSMUST00000213610 4462 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
Msx1P13297 0610025J13Rik-201ENSMUST00000131324 652 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Msx1P13297 Haghl-206ENSMUST00000138759 1074 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Msx1P13297 Rpl26-206ENSMUST00000167436 606 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Msx1P13297 Zfp511-201ENSMUST00000168194 1076 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
Msx1P13297 Gm9682-201ENSMUST00000197505 556 ntBASIC14.26□□□□□ -0.13
Msx1P13297 5033428I22Rik-203ENSMUST00000210614 952 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Msx1P13297 Gm45612-201ENSMUST00000211320 160 ntBASIC14.26□□□□□ -0.13
Msx1P13297 Tpd52l1-202ENSMUST00000213528 969 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Msx1P13297 AC147366.1-201ENSMUST00000227671 852 ntBASIC14.26□□□□□ -0.13
Msx1P13297 Olfr293-201ENSMUST00000081474 1011 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
Msx1P13297 Safb-207ENSMUST00000182533 3122 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
Msx1P13297 Ldb3-208ENSMUST00000228044 1883 ntAPPRIS ALT2 BASIC14.26□□□□□ -0.13
Msx1P13297 Asl-205ENSMUST00000161094 1824 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Msx1P13297 Ogfrl1-201ENSMUST00000027343 4844 ntAPPRIS P1 TSL 3 BASIC14.26□□□□□ -0.13
Msx1P13297 Reps2-202ENSMUST00000112334 7675 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Msx1P13297 Ugcg-201ENSMUST00000030074 4012 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Msx1P13297 Tcf3-210ENSMUST00000105346 2839 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Msx1P13297 C2cd2l-206ENSMUST00000214602 2808 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Msx1P13297 Fgfr4-201ENSMUST00000005452 3324 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Msx1P13297 Ythdf3-202ENSMUST00000108346 4929 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Msx1P13297 Snai3-201ENSMUST00000006762 1628 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Msx1P13297 Cilp2-201ENSMUST00000057831 4314 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
Msx1P13297 Gjb6-201ENSMUST00000039380 2105 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Msx1P13297 Tead4-201ENSMUST00000006311 3076 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Msx1P13297 Mycbpap-201ENSMUST00000040692 1512 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Msx1P13297 Elmo2-203ENSMUST00000094329 3466 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Msx1P13297 Lrrc57-202ENSMUST00000102497 1962 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Msx1P13297 Tnip2-202ENSMUST00000087737 1987 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Msx1P13297 Chpf-201ENSMUST00000079205 2892 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Msx1P13297 Penk-201ENSMUST00000070375 1449 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Msx1P13297 Zpbp2-204ENSMUST00000107511 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Msx1P13297 Best4-ps-201ENSMUST00000129783 1380 ntBASIC14.25□□□□□ -0.13
Msx1P13297 Plekhb1-202ENSMUST00000107043 931 ntTSL 2 BASIC14.25□□□□□ -0.13
Msx1P13297 Acvr1c-203ENSMUST00000112607 1266 ntTSL 5 BASIC14.25□□□□□ -0.13
Msx1P13297 Gm15427-201ENSMUST00000117288 531 ntBASIC14.25□□□□□ -0.13
Msx1P13297 Gm13597-201ENSMUST00000121239 375 ntBASIC14.25□□□□□ -0.13
Msx1P13297 Rpl18-ps1-201ENSMUST00000121555 525 ntBASIC14.25□□□□□ -0.13
Msx1P13297 Gm18489-201ENSMUST00000172565 551 ntBASIC14.25□□□□□ -0.13
Msx1P13297 Gm20661-203ENSMUST00000177368 900 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
Msx1P13297 Rps2-ps5-201ENSMUST00000184266 849 ntBASIC14.25□□□□□ -0.13
Msx1P13297 Mir7023-201ENSMUST00000185093 64 ntBASIC14.25□□□□□ -0.13
Msx1P13297 Tma7-203ENSMUST00000192801 386 ntTSL 3 BASIC14.25□□□□□ -0.13
Msx1P13297 4930448I06Rik-201ENSMUST00000194002 546 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Msx1P13297 Gm43377-201ENSMUST00000201640 455 ntBASIC14.25□□□□□ -0.13
Msx1P13297 Abhd18-207ENSMUST00000203892 1021 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Msx1P13297 Gm10747-201ENSMUST00000217799 1014 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Msx1P13297 Alkbh7-201ENSMUST00000002737 917 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Msx1P13297 Pecr-201ENSMUST00000027381 1186 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Msx1P13297 Cyp2d40-201ENSMUST00000055721 1161 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Msx1P13297 Pcna-ps2-201ENSMUST00000088040 1257 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
Msx1P13297 Hist1h3c-201ENSMUST00000091752 630 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
Msx1P13297 Sgms1-201ENSMUST00000099514 3665 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Msx1P13297 Cd151-201ENSMUST00000058746 1619 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Msx1P13297 Col13a1-205ENSMUST00000105454 3162 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Msx1P13297 Igdcc3-203ENSMUST00000217371 3183 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Msx1P13297 Pld4-201ENSMUST00000063888 1982 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Msx1P13297 Ttll9-202ENSMUST00000103155 1552 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
Msx1P13297 Cpeb3-201ENSMUST00000079754 5899 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
Msx1P13297 Men1-203ENSMUST00000079327 2639 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Msx1P13297 Trip10-201ENSMUST00000019631 2224 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Msx1P13297 Stat3-207ENSMUST00000138438 2506 ntTSL 5 BASIC14.24□□□□□ -0.13
Msx1P13297 Pik3c2b-201ENSMUST00000077730 7928 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
Msx1P13297 Rabggta-205ENSMUST00000227061 2882 ntAPPRIS P1 BASIC14.24□□□□□ -0.13
Msx1P13297 Fam241b-204ENSMUST00000125704 1769 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Msx1P13297 Gnas-211ENSMUST00000109096 2465 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Msx1P13297 Cbl-204ENSMUST00000205968 2809 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Msx1P13297 Mastl-201ENSMUST00000028119 5590 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Msx1P13297 Gtdc1-202ENSMUST00000100127 2422 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Msx1P13297 Slc41a3-202ENSMUST00000044019 2412 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Msx1P13297 Shroom3-202ENSMUST00000113054 6401 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Msx1P13297 Gyg-203ENSMUST00000178328 1698 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 47 ms