Protein–RNA interactions for Protein: P11260

Lire1, LINE-1 retrotransposable element ORF1 protein, mousemouse

Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lire1P11260 Arl11-201ENSMUST00000055159 1482 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Lire1P11260 Nagk-201ENSMUST00000037376 1405 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Lire1P11260 Cdk5r1-201ENSMUST00000053413 4162 ntAPPRIS P1 BASIC14.27□□□□□ -0.12
Lire1P11260 Ahsa1-201ENSMUST00000021425 1377 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Lire1P11260 Irak1-204ENSMUST00000114352 3825 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
Lire1P11260 Tsfm-207ENSMUST00000152054 655 ntTSL 3 BASIC14.27□□□□□ -0.13
Lire1P11260 Rnf170-208ENSMUST00000153528 1026 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
Lire1P11260 Fbxo17-205ENSMUST00000167118 861 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.13
Lire1P11260 Gm3764-206ENSMUST00000181356 1088 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Lire1P11260 Gm27867-201ENSMUST00000184778 125 ntBASIC14.27□□□□□ -0.13
Lire1P11260 Gm26646-202ENSMUST00000205705 439 ntTSL 5 BASIC14.27□□□□□ -0.13
Lire1P11260 Gm45144-201ENSMUST00000207473 354 ntTSL 5 BASIC14.27□□□□□ -0.13
Lire1P11260 Izumo1r-201ENSMUST00000034409 1291 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Lire1P11260 Apopt1-201ENSMUST00000040519 1065 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
Lire1P11260 Cfap20-208ENSMUST00000213086 2544 ntTSL 2 BASIC14.27□□□□□ -0.13
Lire1P11260 Stxbp3-201ENSMUST00000102621 2419 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Lire1P11260 Pam-210ENSMUST00000161567 3630 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.13
Lire1P11260 AI593442-203ENSMUST00000213937 5674 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.13
Lire1P11260 Tbc1d20-201ENSMUST00000028963 3386 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Lire1P11260 Krt6b-201ENSMUST00000023786 2226 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Lire1P11260 B4galt3-202ENSMUST00000111313 2098 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Lire1P11260 Snx19-201ENSMUST00000164099 5762 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Lire1P11260 Men1-206ENSMUST00000113502 2652 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Lire1P11260 Lpar1-201ENSMUST00000055018 3512 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
Lire1P11260 Vps26a-202ENSMUST00000105447 2597 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Lire1P11260 Pcdhga12-201ENSMUST00000044851 5080 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Lire1P11260 Eif1ad-201ENSMUST00000025759 2469 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Lire1P11260 Fcgrt-203ENSMUST00000210642 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Lire1P11260 Gm14317-201ENSMUST00000151754 1464 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Lire1P11260 Npcd-202ENSMUST00000089299 1453 ntAPPRIS P4 TSL 1 (best) BASIC14.26□□□□□ -0.13
Lire1P11260 Eef2kmt-201ENSMUST00000064635 2170 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Lire1P11260 Ss18l1-201ENSMUST00000041126 4343 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Lire1P11260 Fam169b-206ENSMUST00000210558 2815 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
Lire1P11260 Cdc23-201ENSMUST00000025228 2084 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Lire1P11260 Cul7-201ENSMUST00000043464 5530 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Lire1P11260 Sybu-209ENSMUST00000228639 4113 ntBASIC14.26□□□□□ -0.13
Lire1P11260 Fam221a-201ENSMUST00000060561 2730 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
Lire1P11260 Chchd7-205ENSMUST00000120732 711 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Lire1P11260 H2-Bl-201ENSMUST00000173080 1138 ntAPPRIS P5 TSL 1 (best) BASIC14.26□□□□□ -0.13
Lire1P11260 Gm27217-201ENSMUST00000183438 882 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Lire1P11260 H2-Bl-204ENSMUST00000184502 862 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Lire1P11260 Smim22-208ENSMUST00000185147 399 ntAPPRIS ALT2 TSL 2 BASIC14.26□□□□□ -0.13
Lire1P11260 2300002M23Rik-201ENSMUST00000044326 1290 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Lire1P11260 Dnph1-201ENSMUST00000046497 1106 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Lire1P11260 Foxo4-201ENSMUST00000062000 3162 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Lire1P11260 Tmem94-201ENSMUST00000093912 5329 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Lire1P11260 Sema5b-202ENSMUST00000120756 4646 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Lire1P11260 Maged1-201ENSMUST00000026142 2821 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Lire1P11260 CT010456.1-201ENSMUST00000222465 1688 ntTSL 5 BASIC14.26□□□□□ -0.13
Lire1P11260 Gja4-201ENSMUST00000053753 1685 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Lire1P11260 Cend1-201ENSMUST00000084436 1672 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
Lire1P11260 Sbk2-202ENSMUST00000182214 2236 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
Lire1P11260 Gm45650-201ENSMUST00000211162 2169 ntTSL 5 BASIC14.26□□□□□ -0.13
Lire1P11260 Poli-203ENSMUST00000159389 2662 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Lire1P11260 Abraxas1-202ENSMUST00000055245 2139 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Lire1P11260 Wscd1-202ENSMUST00000108510 2956 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
Lire1P11260 Ap3d1-201ENSMUST00000020420 4805 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Lire1P11260 Chaf1b-201ENSMUST00000023666 1922 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Lire1P11260 Gm9768-201ENSMUST00000206007 2861 ntBASIC14.25□□□□□ -0.13
Lire1P11260 Gm31774-201ENSMUST00000212910 1366 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Lire1P11260 Ispd-202ENSMUST00000220519 3122 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Lire1P11260 D6Ertd527e-204ENSMUST00000204927 2218 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
Lire1P11260 Scp2-201ENSMUST00000030340 2640 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Lire1P11260 Ephb1-203ENSMUST00000149800 3471 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Lire1P11260 Kif17-201ENSMUST00000030539 3453 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
Lire1P11260 Plekhn1-201ENSMUST00000105569 3014 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Lire1P11260 Ndufaf8-202ENSMUST00000185558 427 ntTSL 5 BASIC14.25□□□□□ -0.13
Lire1P11260 Gm44357-201ENSMUST00000195897 142 ntBASIC14.25□□□□□ -0.13
Lire1P11260 Gm19658-201ENSMUST00000196231 138 ntBASIC14.25□□□□□ -0.13
Lire1P11260 Gm44367-201ENSMUST00000196836 138 ntBASIC14.25□□□□□ -0.13
Lire1P11260 Gm44350-201ENSMUST00000197197 138 ntBASIC14.25□□□□□ -0.13
Lire1P11260 Gm2213-201ENSMUST00000197485 688 ntBASIC14.25□□□□□ -0.13
Lire1P11260 Gm44390-201ENSMUST00000197533 144 ntBASIC14.25□□□□□ -0.13
Lire1P11260 Gm44313-201ENSMUST00000198018 138 ntBASIC14.25□□□□□ -0.13
Lire1P11260 Gm44486-201ENSMUST00000198508 138 ntBASIC14.25□□□□□ -0.13
Lire1P11260 Gm44314-201ENSMUST00000199263 138 ntBASIC14.25□□□□□ -0.13
Lire1P11260 Gm44394-201ENSMUST00000199558 138 ntBASIC14.25□□□□□ -0.13
Lire1P11260 Gm44484-201ENSMUST00000199873 138 ntBASIC14.25□□□□□ -0.13
Lire1P11260 Gm44466-201ENSMUST00000200264 138 ntBASIC14.25□□□□□ -0.13
Lire1P11260 Gm44359-201ENSMUST00000200671 138 ntBASIC14.25□□□□□ -0.13
Lire1P11260 1810010D01Rik-204ENSMUST00000208788 889 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Lire1P11260 Spata33-204ENSMUST00000212346 715 ntTSL 2 BASIC14.25□□□□□ -0.13
Lire1P11260 Pdcd6-201ENSMUST00000022060 1131 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Lire1P11260 Casc3-204ENSMUST00000169695 3741 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Lire1P11260 Snx9-201ENSMUST00000002436 2411 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Lire1P11260 A830009L08Rik-201ENSMUST00000181054 2807 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Lire1P11260 Col13a1-205ENSMUST00000105454 3162 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Lire1P11260 Pex12-202ENSMUST00000108146 2389 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Lire1P11260 Taok2-201ENSMUST00000071268 4720 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Lire1P11260 Atp13a3-202ENSMUST00000100013 7310 ntAPPRIS P4 TSL 5 BASIC14.25□□□□□ -0.13
Lire1P11260 Tmem176a-201ENSMUST00000101426 1540 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Lire1P11260 Klhl12-201ENSMUST00000027725 3408 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Lire1P11260 Mark2-201ENSMUST00000025921 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Lire1P11260 Erp29-203ENSMUST00000130451 5204 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Lire1P11260 Klf15-204ENSMUST00000203607 2240 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Lire1P11260 Csrnp1-203ENSMUST00000214058 2241 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Lire1P11260 Gm16675-202ENSMUST00000208508 2586 ntTSL 2 BASIC14.25□□□□□ -0.13
Lire1P11260 Brpf1-210ENSMUST00000204626 4381 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Lire1P11260 Tom1l2-201ENSMUST00000064019 2151 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Lire1P11260 Haghl-201ENSMUST00000077938 1405 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 32.9 ms