Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Urah-204ENSMUST00000185612 716 ntAPPRIS P3 TSL 3 BASIC14.2□□□□□ -0.14
Trim3Q9R1R2 Urah-207ENSMUST00000211372 688 ntAPPRIS P3 TSL 2 BASIC14.2□□□□□ -0.14
Trim3Q9R1R2 Cfd-202ENSMUST00000217837 871 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trim3Q9R1R2 Urah-201ENSMUST00000026554 890 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trim3Q9R1R2 Ifi27-204ENSMUST00000079294 963 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trim3Q9R1R2 Vps51-204ENSMUST00000159832 3048 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
Trim3Q9R1R2 Trim3-201ENSMUST00000057525 3016 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trim3Q9R1R2 Tfap2a-203ENSMUST00000223869 2037 ntBASIC14.2□□□□□ -0.14
Trim3Q9R1R2 Lrrc56-201ENSMUST00000047093 2197 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trim3Q9R1R2 Sh2b3-204ENSMUST00000122426 2777 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trim3Q9R1R2 Zfp316-201ENSMUST00000051665 3054 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trim3Q9R1R2 Gm16976-202ENSMUST00000127408 1515 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Trim3Q9R1R2 Nap1l5-201ENSMUST00000059539 1844 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
Trim3Q9R1R2 Large2-203ENSMUST00000111284 2449 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
Trim3Q9R1R2 Acd-201ENSMUST00000042608 3154 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trim3Q9R1R2 Arhgap44-201ENSMUST00000047463 4074 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trim3Q9R1R2 Gm11190-201ENSMUST00000132487 3414 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Trim3Q9R1R2 Myh14-202ENSMUST00000107899 6390 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trim3Q9R1R2 Smpd4-221ENSMUST00000170996 1619 ntTSL 5 BASIC14.19□□□□□ -0.14
Trim3Q9R1R2 Pitx2-206ENSMUST00000174623 1493 ntTSL 2 BASIC14.19□□□□□ -0.14
Trim3Q9R1R2 Fam103a1-201ENSMUST00000042166 1452 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trim3Q9R1R2 Tsn-201ENSMUST00000027623 7063 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trim3Q9R1R2 Cnot7-206ENSMUST00000135269 2461 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Trim3Q9R1R2 Ralgapb-201ENSMUST00000046274 8366 ntAPPRIS ALT1 TSL 5 BASIC14.19□□□□□ -0.14
Trim3Q9R1R2 Slc30a5-201ENSMUST00000067246 3179 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trim3Q9R1R2 Tpr-201ENSMUST00000119161 7480 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
Trim3Q9R1R2 Rab17-204ENSMUST00000131428 1557 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trim3Q9R1R2 Raet1e-204ENSMUST00000181645 1579 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trim3Q9R1R2 Gm7222-201ENSMUST00000117512 906 ntBASIC14.19□□□□□ -0.14
Trim3Q9R1R2 Sec22b-202ENSMUST00000122288 1177 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Trim3Q9R1R2 Hbb-bh0-201ENSMUST00000124800 129 ntBASIC14.19□□□□□ -0.14
Trim3Q9R1R2 BC028777-201ENSMUST00000137883 985 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Trim3Q9R1R2 Timm23-201ENSMUST00000013845 1173 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trim3Q9R1R2 Gm6443-201ENSMUST00000203599 874 ntBASIC14.19□□□□□ -0.14
Trim3Q9R1R2 AV026068-213ENSMUST00000223675 1171 ntBASIC14.19□□□□□ -0.14
Trim3Q9R1R2 Sod1-201ENSMUST00000023707 646 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trim3Q9R1R2 Tmem52-201ENSMUST00000023920 932 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trim3Q9R1R2 Aptx-202ENSMUST00000068125 5383 ntAPPRIS P4 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trim3Q9R1R2 Gm9917-201ENSMUST00000180865 5192 ntTSL 3 BASIC14.19□□□□□ -0.14
Trim3Q9R1R2 Cpxm1-201ENSMUST00000028897 2366 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trim3Q9R1R2 Slc52a3-203ENSMUST00000109859 2204 ntTSL 5 BASIC14.19□□□□□ -0.14
Trim3Q9R1R2 Cpz-201ENSMUST00000038676 2245 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trim3Q9R1R2 Ftsj1-202ENSMUST00000115594 1529 ntTSL 5 BASIC14.19□□□□□ -0.14
Trim3Q9R1R2 Ddhd1-202ENSMUST00000087320 9820 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trim3Q9R1R2 Syt6-201ENSMUST00000090697 4416 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
Trim3Q9R1R2 St8sia2-201ENSMUST00000026896 5368 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trim3Q9R1R2 Gm28111-201ENSMUST00000187786 1393 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Trim3Q9R1R2 Ptprs-202ENSMUST00000086828 5608 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Trim3Q9R1R2 Tomm34-201ENSMUST00000018466 2302 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trim3Q9R1R2 Fam69c-201ENSMUST00000052501 2153 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trim3Q9R1R2 Casc4-204ENSMUST00000110586 4032 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trim3Q9R1R2 Ldb3-208ENSMUST00000228044 1883 ntAPPRIS ALT2 BASIC14.18□□□□□ -0.14
Trim3Q9R1R2 Lonrf3-201ENSMUST00000016383 2911 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trim3Q9R1R2 Sacm1l-201ENSMUST00000026270 3558 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trim3Q9R1R2 Kcna1-202ENSMUST00000203094 3150 ntAPPRIS P1 BASIC14.18□□□□□ -0.14
Trim3Q9R1R2 Glb1-201ENSMUST00000063042 2396 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trim3Q9R1R2 Gstz1-205ENSMUST00000222885 1571 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Trim3Q9R1R2 Reep4-201ENSMUST00000047218 1565 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trim3Q9R1R2 Ankrd33b-204ENSMUST00000123325 7466 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trim3Q9R1R2 Kif1c-203ENSMUST00000102554 6684 ntAPPRIS P2 TSL 5 BASIC14.18□□□□□ -0.14
Trim3Q9R1R2 Fgfr1op2-204ENSMUST00000111663 2880 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Trim3Q9R1R2 Abr-203ENSMUST00000094012 5236 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Trim3Q9R1R2 Myh14-201ENSMUST00000048102 6457 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trim3Q9R1R2 Casp8-201ENSMUST00000027189 2585 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trim3Q9R1R2 Timp2-201ENSMUST00000017610 3709 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trim3Q9R1R2 Slc25a22-201ENSMUST00000019226 2811 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trim3Q9R1R2 Gm15510-201ENSMUST00000123644 1172 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Trim3Q9R1R2 Gm20324-201ENSMUST00000186291 1118 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Trim3Q9R1R2 Il3ra-205ENSMUST00000224877 1128 ntAPPRIS ALT2 BASIC14.18□□□□□ -0.14
Trim3Q9R1R2 Fscn1-201ENSMUST00000031565 2675 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trim3Q9R1R2 Zfp362-201ENSMUST00000071108 2674 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trim3Q9R1R2 Prr15-201ENSMUST00000059138 1511 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trim3Q9R1R2 Med25-210ENSMUST00000208253 3693 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trim3Q9R1R2 Anxa4-201ENSMUST00000001187 2002 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trim3Q9R1R2 D17Wsu92e-202ENSMUST00000114859 3522 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trim3Q9R1R2 Zfp36l2-201ENSMUST00000060366 3530 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trim3Q9R1R2 Dlgap1-211ENSMUST00000148486 5276 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trim3Q9R1R2 Ripk3-203ENSMUST00000178399 1865 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Trim3Q9R1R2 Cbfa2t3-202ENSMUST00000064674 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trim3Q9R1R2 Tnfaip8l1-201ENSMUST00000077788 2379 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trim3Q9R1R2 Pgm1-201ENSMUST00000087324 2369 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trim3Q9R1R2 E430018J23Rik-201ENSMUST00000074249 2063 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Trim3Q9R1R2 Gjb1-201ENSMUST00000052130 1565 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trim3Q9R1R2 Prdm4-207ENSMUST00000220032 3962 ntTSL 5 BASIC14.17□□□□□ -0.14
Trim3Q9R1R2 Scamp1-201ENSMUST00000022197 4259 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trim3Q9R1R2 AC174678.1-201ENSMUST00000228007 2749 ntBASIC14.17□□□□□ -0.14
Trim3Q9R1R2 Pcolce2-201ENSMUST00000015498 4438 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trim3Q9R1R2 Arhgef9-219ENSMUST00000199920 1976 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
Trim3Q9R1R2 Wfikkn1-201ENSMUST00000095487 1981 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trim3Q9R1R2 Atp11b-201ENSMUST00000029257 4868 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trim3Q9R1R2 Kctd14-202ENSMUST00000121987 1210 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Trim3Q9R1R2 1700039E22Rik-201ENSMUST00000174082 770 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Trim3Q9R1R2 Ascl5-201ENSMUST00000180436 567 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
Trim3Q9R1R2 Syce1l-204ENSMUST00000212269 753 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trim3Q9R1R2 Wdyhv1-204ENSMUST00000226955 1094 ntBASIC14.17□□□□□ -0.14
Trim3Q9R1R2 Dars-202ENSMUST00000064309 645 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Trim3Q9R1R2 Psma5-201ENSMUST00000090569 1239 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trim3Q9R1R2 Gm28496-202ENSMUST00000137742 2752 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Trim3Q9R1R2 Ushbp1-201ENSMUST00000049184 2438 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trim3Q9R1R2 Grin1os-201ENSMUST00000129723 2891 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 36.2 ms