Protein–RNA interactions for Protein: Q9CQ56

Use1, Vesicle transport protein USE1, mousemouse

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Use1Q9CQ56 Grik4-202ENSMUST00000114865 5887 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Use1Q9CQ56 Synm-204ENSMUST00000208231 4457 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Use1Q9CQ56 Med16-201ENSMUST00000105378 3197 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Use1Q9CQ56 Klhl33-204ENSMUST00000227271 5513 ntAPPRIS P1 BASIC14.28□□□□□ -0.12
Use1Q9CQ56 Gm5934-201ENSMUST00000120734 2588 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
Use1Q9CQ56 Efs-202ENSMUST00000227037 2540 ntBASIC14.28□□□□□ -0.12
Use1Q9CQ56 Tmem116-204ENSMUST00000111795 2221 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
Use1Q9CQ56 Ralgds-201ENSMUST00000028170 3590 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.12
Use1Q9CQ56 Rtn4-201ENSMUST00000060992 1773 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Use1Q9CQ56 Tmtc4-201ENSMUST00000037726 3416 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Use1Q9CQ56 Raet1e-204ENSMUST00000181645 1579 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Use1Q9CQ56 Gipc2-201ENSMUST00000046614 1596 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Use1Q9CQ56 Espn-220ENSMUST00000207676 4618 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.12
Use1Q9CQ56 Vps72-201ENSMUST00000009102 1456 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Use1Q9CQ56 Gm26793-201ENSMUST00000180930 2732 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Use1Q9CQ56 Rbm3-206ENSMUST00000115621 1338 ntAPPRIS ALT1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Use1Q9CQ56 Syt3-201ENSMUST00000118831 2627 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.13
Use1Q9CQ56 Olfr55-201ENSMUST00000112168 948 ntAPPRIS P1 BASIC14.27□□□□□ -0.13
Use1Q9CQ56 Naa10-206ENSMUST00000114391 834 ntTSL 5 BASIC14.27□□□□□ -0.13
Use1Q9CQ56 Gm5577-203ENSMUST00000153372 815 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Use1Q9CQ56 Gm27357-201ENSMUST00000183754 135 ntBASIC14.27□□□□□ -0.13
Use1Q9CQ56 Gm35154-202ENSMUST00000217008 1093 ntTSL 5 BASIC14.27□□□□□ -0.13
Use1Q9CQ56 Pspn-201ENSMUST00000002740 474 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Use1Q9CQ56 Prss48-201ENSMUST00000061343 949 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Use1Q9CQ56 Tomm70a-201ENSMUST00000166897 3778 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Use1Q9CQ56 Zfp36-202ENSMUST00000209061 2465 ntAPPRIS ALT2 BASIC14.27□□□□□ -0.13
Use1Q9CQ56 Stard5-201ENSMUST00000075418 2483 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Use1Q9CQ56 Brd7-201ENSMUST00000034085 3625 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Use1Q9CQ56 Sfta3-ps-205ENSMUST00000220379 2187 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Use1Q9CQ56 Clcn2-201ENSMUST00000007207 3128 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.13
Use1Q9CQ56 Hacd4-201ENSMUST00000030221 2089 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Use1Q9CQ56 Adam23-205ENSMUST00000114107 6110 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.13
Use1Q9CQ56 Zbp1-201ENSMUST00000029018 1989 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Use1Q9CQ56 Gm11960-202ENSMUST00000181063 2858 ntBASIC14.27□□□□□ -0.13
Use1Q9CQ56 Doc2b-201ENSMUST00000021209 4361 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Use1Q9CQ56 Zfp90-201ENSMUST00000034382 2632 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Use1Q9CQ56 2610206C17Rik-201ENSMUST00000129059 1717 ntTSL 2 BASIC14.27□□□□□ -0.13
Use1Q9CQ56 Dzip3-201ENSMUST00000114516 3331 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
Use1Q9CQ56 Tbc1d4-210ENSMUST00000162617 4762 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
Use1Q9CQ56 Trmu-201ENSMUST00000023019 1526 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Use1Q9CQ56 Kdf1-203ENSMUST00000121797 2256 ntAPPRIS ALT2 TSL 2 BASIC14.26□□□□□ -0.13
Use1Q9CQ56 Slc8a2-202ENSMUST00000211649 5261 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
Use1Q9CQ56 G630022F23Rik-201ENSMUST00000202923 3627 ntBASIC14.26□□□□□ -0.13
Use1Q9CQ56 Nit1-202ENSMUST00000111295 1335 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
Use1Q9CQ56 Plcxd1-201ENSMUST00000086687 1346 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Use1Q9CQ56 Cuedc2-202ENSMUST00000167861 1941 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
Use1Q9CQ56 Fbxo27-201ENSMUST00000039998 1946 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
Use1Q9CQ56 Rhoc-202ENSMUST00000106787 959 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
Use1Q9CQ56 Gm15510-201ENSMUST00000123644 1172 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Use1Q9CQ56 4930401G09Rik-201ENSMUST00000139500 637 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Use1Q9CQ56 Gm42456-201ENSMUST00000196840 387 ntTSL 3 BASIC14.26□□□□□ -0.13
Use1Q9CQ56 Hs3st2-202ENSMUST00000206880 1149 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Use1Q9CQ56 Syce1l-204ENSMUST00000212269 753 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Use1Q9CQ56 AC154471.1-201ENSMUST00000224418 436 ntBASIC14.26□□□□□ -0.13
Use1Q9CQ56 Pfdn6-201ENSMUST00000025163 807 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Use1Q9CQ56 Fgf5-201ENSMUST00000031280 2501 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Use1Q9CQ56 Cd151-202ENSMUST00000106000 1865 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
Use1Q9CQ56 Fstl5-201ENSMUST00000038364 5107 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Use1Q9CQ56 Synrg-207ENSMUST00000183456 3990 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
Use1Q9CQ56 Ptpn6-202ENSMUST00000112484 2219 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
Use1Q9CQ56 Mpped1-201ENSMUST00000046168 3265 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Use1Q9CQ56 Ap5m1-205ENSMUST00000227431 3757 ntBASIC14.26□□□□□ -0.13
Use1Q9CQ56 Wdr1-205ENSMUST00000201260 2139 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Use1Q9CQ56 Scyl1-201ENSMUST00000025890 2637 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Use1Q9CQ56 Nfe2l1-201ENSMUST00000081775 4654 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
Use1Q9CQ56 Gm37912-201ENSMUST00000191895 3076 ntBASIC14.26□□□□□ -0.13
Use1Q9CQ56 Pigv-201ENSMUST00000062118 3979 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Use1Q9CQ56 B3gnt4-201ENSMUST00000031384 1423 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
Use1Q9CQ56 Mctp1-204ENSMUST00000125209 4715 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Use1Q9CQ56 Dmxl1-202ENSMUST00000180611 11319 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Use1Q9CQ56 Ttc3-201ENSMUST00000117648 7417 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
Use1Q9CQ56 Hic2-202ENSMUST00000115698 2765 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Use1Q9CQ56 Ntng1-203ENSMUST00000106570 1386 ntTSL 5 BASIC14.25□□□□□ -0.13
Use1Q9CQ56 Cd302-202ENSMUST00000074606 1354 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Use1Q9CQ56 Tbl1xr1-203ENSMUST00000193734 8237 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Use1Q9CQ56 4930459C07Rik-202ENSMUST00000219638 1805 ntTSL 5 BASIC14.25□□□□□ -0.13
Use1Q9CQ56 Gm7935-201ENSMUST00000100555 1278 ntBASIC14.25□□□□□ -0.13
Use1Q9CQ56 Wbp2-202ENSMUST00000106444 1012 ntTSL 2 BASIC14.25□□□□□ -0.13
Use1Q9CQ56 Gmnn-202ENSMUST00000110382 963 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Use1Q9CQ56 Gm14859-201ENSMUST00000117752 357 ntBASIC14.25□□□□□ -0.13
Use1Q9CQ56 Gm15358-201ENSMUST00000119249 520 ntBASIC14.25□□□□□ -0.13
Use1Q9CQ56 Dusp13-213ENSMUST00000184703 902 ntAPPRIS ALT1 TSL 5 BASIC14.25□□□□□ -0.13
Use1Q9CQ56 Smim22-208ENSMUST00000185147 399 ntAPPRIS ALT2 TSL 2 BASIC14.25□□□□□ -0.13
Use1Q9CQ56 Tm4sf5-201ENSMUST00000019063 1000 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Use1Q9CQ56 Tecr-201ENSMUST00000019382 1158 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Use1Q9CQ56 AC093926.2-201ENSMUST00000214468 1228 ntBASIC14.25□□□□□ -0.13
Use1Q9CQ56 Ccdc182-201ENSMUST00000037268 1204 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
Use1Q9CQ56 4930465K10Rik-201ENSMUST00000056675 1238 ntBASIC14.25□□□□□ -0.13
Use1Q9CQ56 Pym1-201ENSMUST00000065210 1156 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Use1Q9CQ56 Cldn19-201ENSMUST00000084309 924 ntAPPRIS P4 TSL 1 (best) BASIC14.25□□□□□ -0.13
Use1Q9CQ56 Dnmt3b-202ENSMUST00000072997 4208 ntAPPRIS P4 TSL 1 (best) BASIC14.25□□□□□ -0.13
Use1Q9CQ56 Tcf19-203ENSMUST00000161012 1665 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Use1Q9CQ56 Abi2-201ENSMUST00000052332 5768 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Use1Q9CQ56 Slc46a3-201ENSMUST00000031655 2434 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Use1Q9CQ56 Ushbp1-201ENSMUST00000049184 2438 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Use1Q9CQ56 Atp2c2-201ENSMUST00000095171 3222 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Use1Q9CQ56 Lancl3-201ENSMUST00000069763 3991 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Use1Q9CQ56 Gstz1-205ENSMUST00000222885 1571 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Use1Q9CQ56 Ppfia3-201ENSMUST00000003961 4647 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Use1Q9CQ56 Fgfr2-207ENSMUST00000117872 4223 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 30.5 ms