Protein–RNA interactions for Protein: Q61069

Usf1, Upstream stimulatory factor 1, mousemouse

Predictions only

Length 310 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usf1Q61069 Cnppd1-208ENSMUST00000190679 2062 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Usf1Q61069 Zfp74-203ENSMUST00000108211 1278 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Usf1Q61069 Ccdc69-202ENSMUST00000108880 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Usf1Q61069 Gm12859-201ENSMUST00000117834 427 ntBASIC13.69□□□□□ -0.22
Usf1Q61069 Gm15593-201ENSMUST00000122085 1008 ntBASIC13.69□□□□□ -0.22
Usf1Q61069 1700121C08Rik-201ENSMUST00000137546 677 ntTSL 3 BASIC13.69□□□□□ -0.22
Usf1Q61069 Meg3-208ENSMUST00000143847 706 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Usf1Q61069 Klk2-ps-201ENSMUST00000205342 571 ntBASIC13.69□□□□□ -0.22
Usf1Q61069 Vmn2r-ps89-201ENSMUST00000209195 1010 ntBASIC13.69□□□□□ -0.22
Usf1Q61069 Nup37-201ENSMUST00000052355 1267 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Usf1Q61069 Zswim7-201ENSMUST00000072916 732 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Usf1Q61069 Ifi27-202ENSMUST00000076702 828 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Usf1Q61069 Pabpn1l-201ENSMUST00000093059 1148 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Usf1Q61069 Snx11-202ENSMUST00000107661 2197 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Usf1Q61069 Zmynd15-203ENSMUST00000108563 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Usf1Q61069 Gm8334-201ENSMUST00000112755 1662 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
Usf1Q61069 Cradd-201ENSMUST00000053594 1661 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Usf1Q61069 Desi2-201ENSMUST00000027783 8802 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Usf1Q61069 Gm15998-201ENSMUST00000135144 1844 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Usf1Q61069 Ppm1d-201ENSMUST00000020835 2899 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Usf1Q61069 Prrg2-208ENSMUST00000210690 1623 ntAPPRIS P2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Usf1Q61069 Ubp1-206ENSMUST00000216558 1623 ntAPPRIS P4 TSL 1 (best) BASIC13.68□□□□□ -0.22
Usf1Q61069 P2rx3-203ENSMUST00000111616 1315 ntTSL 5 BASIC13.68□□□□□ -0.22
Usf1Q61069 Haglr-202ENSMUST00000152462 443 ntTSL 2 BASIC13.68□□□□□ -0.22
Usf1Q61069 Gm6473-201ENSMUST00000188572 1210 ntBASIC13.68□□□□□ -0.22
Usf1Q61069 AC087891.2-201ENSMUST00000219293 658 ntTSL 5 BASIC13.68□□□□□ -0.22
Usf1Q61069 Golph3-201ENSMUST00000059680 2652 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Usf1Q61069 Wdr86-201ENSMUST00000068693 2364 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
Usf1Q61069 Stard7-201ENSMUST00000110374 1530 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Usf1Q61069 Tmtc4-209ENSMUST00000148661 2719 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Usf1Q61069 Adamts14-201ENSMUST00000092486 5188 ntAPPRIS P2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Usf1Q61069 Zfp446-204ENSMUST00000108537 2178 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Usf1Q61069 Gm20482-201ENSMUST00000172746 1644 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Usf1Q61069 Cyp2d10-201ENSMUST00000072776 1647 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Usf1Q61069 Sfmbt1-201ENSMUST00000054230 7837 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
Usf1Q61069 Nsmce3-201ENSMUST00000094331 5946 ntAPPRIS P1 BASIC13.68□□□□□ -0.22
Usf1Q61069 Mon1b-201ENSMUST00000035777 4998 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Usf1Q61069 Acot4-201ENSMUST00000021652 6203 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Usf1Q61069 Foxp4-203ENSMUST00000113263 3156 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
Usf1Q61069 Pcdha9-201ENSMUST00000115659 5341 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Usf1Q61069 Gm28265-201ENSMUST00000188201 2319 ntBASIC13.67□□□□□ -0.22
Usf1Q61069 Abcd4-201ENSMUST00000021666 2309 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Usf1Q61069 Kdr-201ENSMUST00000113516 5924 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Usf1Q61069 Sept11-205ENSMUST00000201700 3478 ntAPPRIS ALT1 TSL 2 BASIC13.67□□□□□ -0.22
Usf1Q61069 Rab35-201ENSMUST00000031492 2820 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Usf1Q61069 Piezo2-201ENSMUST00000046860 2849 ntTSL 5 BASIC13.67□□□□□ -0.22
Usf1Q61069 Ormdl3-201ENSMUST00000052919 2184 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Usf1Q61069 Gm4204-201ENSMUST00000110798 1231 ntBASIC13.67□□□□□ -0.22
Usf1Q61069 Pebp1-202ENSMUST00000111973 779 ntTSL 3 BASIC13.67□□□□□ -0.22
Usf1Q61069 Gm15321-201ENSMUST00000121290 288 ntBASIC13.67□□□□□ -0.22
Usf1Q61069 Gm12454-201ENSMUST00000139119 978 ntTSL 2 BASIC13.67□□□□□ -0.22
Usf1Q61069 Gm13568-201ENSMUST00000156099 446 ntTSL 5 BASIC13.67□□□□□ -0.22
Usf1Q61069 Il11-202ENSMUST00000163481 990 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Usf1Q61069 Ndufv3-205ENSMUST00000191598 642 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Usf1Q61069 AL593843.1-201ENSMUST00000195891 145 ntBASIC13.67□□□□□ -0.22
Usf1Q61069 Cdk7-205ENSMUST00000225990 1159 ntBASIC13.67□□□□□ -0.22
Usf1Q61069 Epo-201ENSMUST00000031723 715 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
Usf1Q61069 Nradd-201ENSMUST00000035069 1223 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Usf1Q61069 Olfr750-201ENSMUST00000048478 1132 ntAPPRIS P1 BASIC13.67□□□□□ -0.22
Usf1Q61069 Ifnl2-201ENSMUST00000081684 702 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Usf1Q61069 Dmrt1-202ENSMUST00000087525 1130 ntTSL 5 BASIC13.67□□□□□ -0.22
Usf1Q61069 Acap3-201ENSMUST00000079031 4301 ntTSL 5 BASIC13.67□□□□□ -0.22
Usf1Q61069 Mterf4-202ENSMUST00000112942 1525 ntTSL 2 BASIC13.67□□□□□ -0.22
Usf1Q61069 Nap1l1-208ENSMUST00000219961 1512 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Usf1Q61069 Eif4g3-203ENSMUST00000084215 8134 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
Usf1Q61069 Slc5a10-203ENSMUST00000148584 2049 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Usf1Q61069 Cachd1-202ENSMUST00000097955 4277 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Usf1Q61069 Ifngr1-201ENSMUST00000020188 2112 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Usf1Q61069 Sirt6-201ENSMUST00000042923 1891 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
Usf1Q61069 Slc39a13-202ENSMUST00000079976 1884 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Usf1Q61069 Chn1-203ENSMUST00000112024 4050 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Usf1Q61069 Chn1-210ENSMUST00000180045 4050 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Usf1Q61069 Mapk8ip3-208ENSMUST00000121787 5431 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Usf1Q61069 Kif7-201ENSMUST00000059836 4521 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
Usf1Q61069 Shank1-201ENSMUST00000107934 6477 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
Usf1Q61069 Pick1-202ENSMUST00000053926 2415 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Usf1Q61069 Dcaf13-201ENSMUST00000022909 1551 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Usf1Q61069 Lzts2-203ENSMUST00000179108 2781 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Usf1Q61069 Rmnd5b-201ENSMUST00000001081 1946 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Usf1Q61069 Phax-201ENSMUST00000008445 1942 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
Usf1Q61069 Itga6-201ENSMUST00000028522 4310 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
Usf1Q61069 Cbl-201ENSMUST00000037644 4901 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Usf1Q61069 Arhgef40-216ENSMUST00000182760 5130 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
Usf1Q61069 Ostf1-201ENSMUST00000025631 2726 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Usf1Q61069 Gm16867-201ENSMUST00000179116 3084 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Usf1Q61069 Lrrn2-201ENSMUST00000027706 3428 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Usf1Q61069 Blzf1-202ENSMUST00000086032 1602 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Usf1Q61069 Gm11555-202ENSMUST00000104929 638 ntAPPRIS P1 BASIC13.66□□□□□ -0.22
Usf1Q61069 Cmss1-201ENSMUST00000114371 930 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Usf1Q61069 E130218I03Rik-203ENSMUST00000125921 666 ntAPPRIS P1 TSL 2 BASIC13.66□□□□□ -0.22
Usf1Q61069 E130218I03Rik-206ENSMUST00000135228 544 ntAPPRIS P1 TSL 3 BASIC13.66□□□□□ -0.22
Usf1Q61069 E130218I03Rik-207ENSMUST00000143448 591 ntAPPRIS P1 TSL 3 BASIC13.66□□□□□ -0.22
Usf1Q61069 Gm24694-201ENSMUST00000180054 110 ntBASIC13.66□□□□□ -0.22
Usf1Q61069 Gm27663-201ENSMUST00000184839 110 ntBASIC13.66□□□□□ -0.22
Usf1Q61069 Gm6218-201ENSMUST00000219812 628 ntBASIC13.66□□□□□ -0.22
Usf1Q61069 AC154239.3-201ENSMUST00000226933 674 ntBASIC13.66□□□□□ -0.22
Usf1Q61069 2610528J11Rik-201ENSMUST00000030261 958 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Usf1Q61069 Guca2b-201ENSMUST00000044426 605 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Usf1Q61069 Pdlim7-203ENSMUST00000069968 1006 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Usf1Q61069 Ankrd44-210ENSMUST00000179030 6140 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Retrieved 100 of 76,532 protein–RNA pairs in 65.5 ms