Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 Cdhr5-202ENSMUST00000167263 2628 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trim40Q3UWA4 Cds1-201ENSMUST00000031273 3924 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trim40Q3UWA4 C230004F18Rik-203ENSMUST00000137153 2138 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Trim40Q3UWA4 Klc2-203ENSMUST00000113728 2838 ntTSL 5 BASIC14.17□□□□□ -0.14
Trim40Q3UWA4 Gm38391-201ENSMUST00000191720 4069 ntBASIC14.17□□□□□ -0.14
Trim40Q3UWA4 Tmem80-202ENSMUST00000126510 959 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
Trim40Q3UWA4 Cxxc4-201ENSMUST00000166288 1290 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
Trim40Q3UWA4 Gadd45b-203ENSMUST00000220246 732 ntTSL 2 BASIC14.17□□□□□ -0.14
Trim40Q3UWA4 Nnat-201ENSMUST00000088484 458 ntTSL 2 BASIC14.17□□□□□ -0.14
Trim40Q3UWA4 Slc20a2-201ENSMUST00000067786 3566 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trim40Q3UWA4 Gal3st4-202ENSMUST00000161279 2059 ntAPPRIS P3 TSL 3 BASIC14.17□□□□□ -0.14
Trim40Q3UWA4 Pank4-201ENSMUST00000030931 2508 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trim40Q3UWA4 Itfg1-201ENSMUST00000034140 3306 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trim40Q3UWA4 Itgav-201ENSMUST00000028499 7054 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trim40Q3UWA4 Ssbp2-201ENSMUST00000004094 3957 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trim40Q3UWA4 Pafah1b1-202ENSMUST00000102520 5789 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trim40Q3UWA4 Cpeb3-208ENSMUST00000132580 3148 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trim40Q3UWA4 Elac1-201ENSMUST00000041138 4971 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trim40Q3UWA4 Sh2b1-205ENSMUST00000205733 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trim40Q3UWA4 1010001N08Rik-201ENSMUST00000180789 1967 ntTSL 2 BASIC14.16□□□□□ -0.14
Trim40Q3UWA4 Tspan9-201ENSMUST00000032503 1405 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trim40Q3UWA4 Retreg3-201ENSMUST00000017946 3165 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trim40Q3UWA4 Brpf1-210ENSMUST00000204626 4381 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trim40Q3UWA4 Fgfr2-207ENSMUST00000117872 4223 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trim40Q3UWA4 Fgfr3-210ENSMUST00000169212 4245 ntAPPRIS P4 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trim40Q3UWA4 Ptk2-202ENSMUST00000170939 3598 ntTSL 2 BASIC14.16□□□□□ -0.14
Trim40Q3UWA4 Ccdc68-201ENSMUST00000043929 1618 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trim40Q3UWA4 Tgif2-202ENSMUST00000081335 2900 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trim40Q3UWA4 Spryd3-203ENSMUST00000154032 2456 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
Trim40Q3UWA4 Tmbim6-201ENSMUST00000023749 2452 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trim40Q3UWA4 Gm27177-203ENSMUST00000184034 1911 ntTSL 5 BASIC14.16□□□□□ -0.14
Trim40Q3UWA4 Fbxo27-201ENSMUST00000039998 1946 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trim40Q3UWA4 Cnksr2-202ENSMUST00000112513 4471 ntTSL 5 BASIC14.16□□□□□ -0.14
Trim40Q3UWA4 AA467197-202ENSMUST00000110512 751 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trim40Q3UWA4 Slc2a8-204ENSMUST00000153484 1168 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Trim40Q3UWA4 Ccdc125-202ENSMUST00000170347 1216 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trim40Q3UWA4 Cmc1-201ENSMUST00000044220 1169 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trim40Q3UWA4 Ptprs-202ENSMUST00000086828 5608 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Trim40Q3UWA4 Dnm1-205ENSMUST00000113365 3257 ntAPPRIS ALT1 TSL 5 BASIC14.16□□□□□ -0.14
Trim40Q3UWA4 Fars2-208ENSMUST00000224611 1750 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
Trim40Q3UWA4 Miip-202ENSMUST00000119975 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trim40Q3UWA4 4930438A08Rik-201ENSMUST00000108834 2093 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
Trim40Q3UWA4 Tmem30a-202ENSMUST00000120690 3627 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
Trim40Q3UWA4 Mapt-203ENSMUST00000106989 2250 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
Trim40Q3UWA4 Doc2b-201ENSMUST00000021209 4361 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trim40Q3UWA4 Tpr-203ENSMUST00000124973 7430 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trim40Q3UWA4 Asprv1-201ENSMUST00000043400 1547 ntAPPRIS P1 BASIC14.15□□□□□ -0.14
Trim40Q3UWA4 Tmem255a-203ENSMUST00000089056 1745 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Trim40Q3UWA4 Fam131a-201ENSMUST00000056518 2432 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trim40Q3UWA4 Trmt6-201ENSMUST00000039554 2828 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trim40Q3UWA4 Slc4a1-201ENSMUST00000006749 4545 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trim40Q3UWA4 Arid3a-202ENSMUST00000105376 4892 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trim40Q3UWA4 Ephb1-201ENSMUST00000035129 4667 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trim40Q3UWA4 Arpin-201ENSMUST00000048731 2277 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trim40Q3UWA4 Tub-202ENSMUST00000119474 2097 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Trim40Q3UWA4 4930558J18Rik-201ENSMUST00000181949 2052 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Trim40Q3UWA4 Slc2a6-202ENSMUST00000102890 1887 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Trim40Q3UWA4 March11-203ENSMUST00000152841 1365 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trim40Q3UWA4 Cldn18-203ENSMUST00000131922 860 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Trim40Q3UWA4 Gm16731-201ENSMUST00000132432 922 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Trim40Q3UWA4 Gm20422-202ENSMUST00000149782 956 ntTSL 2 BASIC14.15□□□□□ -0.14
Trim40Q3UWA4 Gfod2-203ENSMUST00000155038 951 ntTSL 2 BASIC14.15□□□□□ -0.14
Trim40Q3UWA4 E2f7-205ENSMUST00000173634 827 ntTSL 2 BASIC14.15□□□□□ -0.14
Trim40Q3UWA4 Has3-202ENSMUST00000175987 1154 ntTSL 5 BASIC14.15□□□□□ -0.14
Trim40Q3UWA4 4932443I19Rik-204ENSMUST00000214337 1212 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
Trim40Q3UWA4 Mrpl21-202ENSMUST00000025745 1138 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trim40Q3UWA4 AU040320-201ENSMUST00000047431 4384 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trim40Q3UWA4 Srp68-202ENSMUST00000106425 2330 ntTSL 5 BASIC14.15□□□□□ -0.14
Trim40Q3UWA4 Ap1s2-202ENSMUST00000069041 2226 ntAPPRIS P4 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trim40Q3UWA4 Gnl3-201ENSMUST00000037739 1947 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trim40Q3UWA4 Srsf10-204ENSMUST00000105853 3058 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trim40Q3UWA4 Dmxl1-202ENSMUST00000180611 11319 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trim40Q3UWA4 Rcbtb1-202ENSMUST00000043227 3903 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trim40Q3UWA4 Rabl2-201ENSMUST00000023294 1640 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trim40Q3UWA4 Zhx3-203ENSMUST00000109460 4480 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trim40Q3UWA4 Cage1-202ENSMUST00000089840 3449 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Trim40Q3UWA4 Rpp25-201ENSMUST00000080514 1423 ntAPPRIS P1 BASIC14.15□□□□□ -0.14
Trim40Q3UWA4 Yod1-201ENSMUST00000049813 6128 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trim40Q3UWA4 Itga8-201ENSMUST00000028106 5812 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trim40Q3UWA4 Zfp574-202ENSMUST00000179556 4140 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trim40Q3UWA4 Lats2-210ENSMUST00000174694 3287 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
Trim40Q3UWA4 Mapk9-210ENSMUST00000178543 4677 ntAPPRIS ALT1 TSL 5 BASIC14.14□□□□□ -0.15
Trim40Q3UWA4 Cadps2-213ENSMUST00000166458 4598 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
Trim40Q3UWA4 Zfp879-202ENSMUST00000109133 2229 ntTSL 5 BASIC14.14□□□□□ -0.15
Trim40Q3UWA4 Atp2a2-202ENSMUST00000177974 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trim40Q3UWA4 Slc25a34-201ENSMUST00000038661 2670 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trim40Q3UWA4 Eif4ebp2-201ENSMUST00000020288 5784 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trim40Q3UWA4 Irf7-201ENSMUST00000026571 1916 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trim40Q3UWA4 Foxi1-201ENSMUST00000060271 2357 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trim40Q3UWA4 Cyp2u1-201ENSMUST00000106337 4378 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trim40Q3UWA4 Prickle4-201ENSMUST00000113299 990 ntTSL 5 BASIC14.14□□□□□ -0.15
Trim40Q3UWA4 Prickle4-202ENSMUST00000113300 1110 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
Trim40Q3UWA4 Gm11860-201ENSMUST00000122346 1010 ntBASIC14.14□□□□□ -0.15
Trim40Q3UWA4 Gm16120-201ENSMUST00000127990 808 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Trim40Q3UWA4 Gm15295-201ENSMUST00000139874 488 ntTSL 5 BASIC14.14□□□□□ -0.15
Trim40Q3UWA4 Mgarp-203ENSMUST00000141156 1246 ntAPPRIS ALT2 TSL 2 BASIC14.14□□□□□ -0.15
Trim40Q3UWA4 Il3ra-205ENSMUST00000224877 1128 ntAPPRIS ALT2 BASIC14.14□□□□□ -0.15
Trim40Q3UWA4 Sec11c-201ENSMUST00000025394 807 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trim40Q3UWA4 Grcc10-201ENSMUST00000004389 863 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trim40Q3UWA4 Olfr1411-201ENSMUST00000073748 972 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 24.5 ms