Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Aaed1-202ENSMUST00000220895 2858 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Col8a1Q00780 Slain1-201ENSMUST00000069443 2863 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Col8a1Q00780 Dcdc2c-206ENSMUST00000221349 2209 ntAPPRIS P1 TSL 5 BASIC12.85□□□□□ -0.35
Col8a1Q00780 Procr-201ENSMUST00000029140 1597 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Col8a1Q00780 Ankle2-206ENSMUST00000197188 4077 ntAPPRIS P3 TSL 1 (best) BASIC12.85□□□□□ -0.35
Col8a1Q00780 Fbxo8-202ENSMUST00000110322 1709 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Col8a1Q00780 Cand2-201ENSMUST00000075995 5474 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Col8a1Q00780 Nfe2-208ENSMUST00000149111 1878 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Col8a1Q00780 Aldh1a3-203ENSMUST00000174209 1496 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Col8a1Q00780 Map4-201ENSMUST00000035055 6091 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
Col8a1Q00780 Atp1a1-201ENSMUST00000036493 3679 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Col8a1Q00780 Pde8b-214ENSMUST00000172104 2493 ntAPPRIS ALT2 TSL 5 BASIC12.84□□□□□ -0.35
Col8a1Q00780 Ggnbp2-201ENSMUST00000018547 2478 ntTSL 5 BASIC12.84□□□□□ -0.35
Col8a1Q00780 Pcdh20-201ENSMUST00000061628 5241 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Col8a1Q00780 Chrna4-202ENSMUST00000108851 2071 ntAPPRIS ALT2 TSL 5 BASIC12.84□□□□□ -0.35
Col8a1Q00780 Fam178b-201ENSMUST00000114981 1659 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
Col8a1Q00780 Icam4-201ENSMUST00000001040 971 ntAPPRIS P2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Col8a1Q00780 Gm6912-201ENSMUST00000117218 544 ntBASIC12.84□□□□□ -0.35
Col8a1Q00780 Gm14719-201ENSMUST00000121891 340 ntBASIC12.84□□□□□ -0.35
Col8a1Q00780 D11Bhm181e-201ENSMUST00000122252 282 ntBASIC12.84□□□□□ -0.35
Col8a1Q00780 4930527A07Rik-201ENSMUST00000130677 559 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Col8a1Q00780 Gm27177-205ENSMUST00000184792 706 ntTSL 5 BASIC12.84□□□□□ -0.35
Col8a1Q00780 Gm19710-202ENSMUST00000200320 493 ntTSL 3 BASIC12.84□□□□□ -0.35
Col8a1Q00780 Ndufs6-203ENSMUST00000222930 512 ntTSL 3 BASIC12.84□□□□□ -0.35
Col8a1Q00780 Dkkl1-201ENSMUST00000033057 1149 ntAPPRIS P2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Col8a1Q00780 Neurl2-201ENSMUST00000042775 1014 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Col8a1Q00780 Nup37-201ENSMUST00000052355 1267 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Col8a1Q00780 Trnt1-201ENSMUST00000057578 2283 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Col8a1Q00780 Sbk2-205ENSMUST00000208109 1422 ntTSL 5 BASIC12.84□□□□□ -0.35
Col8a1Q00780 Krt9-201ENSMUST00000059707 2580 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Col8a1Q00780 Coro1a-202ENSMUST00000106364 1747 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Col8a1Q00780 Wipf1-202ENSMUST00000102679 2039 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Col8a1Q00780 Slc30a2-201ENSMUST00000081094 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Col8a1Q00780 Fem1a-201ENSMUST00000060253 6816 ntAPPRIS P1 BASIC12.84□□□□□ -0.35
Col8a1Q00780 Chtf8-206ENSMUST00000177068 2931 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Col8a1Q00780 Map6-207ENSMUST00000208924 2906 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Col8a1Q00780 Rasip1-201ENSMUST00000057927 3202 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Col8a1Q00780 Syt7-204ENSMUST00000223586 1344 ntBASIC12.84□□□□□ -0.35
Col8a1Q00780 Blzf1-202ENSMUST00000086032 1602 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Col8a1Q00780 Gm14066-201ENSMUST00000134801 2057 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Col8a1Q00780 Mios-201ENSMUST00000040017 3710 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Col8a1Q00780 Prkcb-201ENSMUST00000064921 2557 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.35
Col8a1Q00780 AC069562.2-201ENSMUST00000224644 2146 ntBASIC12.83□□□□□ -0.35
Col8a1Q00780 Spag16-201ENSMUST00000065425 2126 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
Col8a1Q00780 Gm9821-201ENSMUST00000178895 1953 ntAPPRIS P1 BASIC12.83□□□□□ -0.35
Col8a1Q00780 Chsy3-201ENSMUST00000080721 2931 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Col8a1Q00780 2610206C17Rik-201ENSMUST00000129059 1717 ntTSL 2 BASIC12.83□□□□□ -0.36
Col8a1Q00780 1700121C08Rik-201ENSMUST00000137546 677 ntTSL 3 BASIC12.83□□□□□ -0.36
Col8a1Q00780 Gm6257-201ENSMUST00000163864 910 ntBASIC12.83□□□□□ -0.36
Col8a1Q00780 Gm20509-201ENSMUST00000174203 1016 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.36
Col8a1Q00780 Gm9824-201ENSMUST00000178707 561 ntBASIC12.83□□□□□ -0.36
Col8a1Q00780 B9d2-202ENSMUST00000205325 593 ntTSL 2 BASIC12.83□□□□□ -0.36
Col8a1Q00780 Coprs-202ENSMUST00000209371 601 ntTSL 3 BASIC12.83□□□□□ -0.36
Col8a1Q00780 Gstp2-201ENSMUST00000042700 770 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Col8a1Q00780 Gm20708-201ENSMUST00000132298 1780 ntAPPRIS P1 TSL 2 BASIC12.83□□□□□ -0.36
Col8a1Q00780 Fam102a-201ENSMUST00000048375 4223 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Col8a1Q00780 Dph1-201ENSMUST00000044949 2139 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Col8a1Q00780 2010007H06Rik-202ENSMUST00000186025 4934 ntTSL 2 BASIC12.83□□□□□ -0.36
Col8a1Q00780 Aste1-202ENSMUST00000123807 2349 ntAPPRIS ALT2 TSL 2 BASIC12.83□□□□□ -0.36
Col8a1Q00780 Fcho1-209ENSMUST00000146100 3188 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Col8a1Q00780 Cspg5-204ENSMUST00000197850 7868 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.36
Col8a1Q00780 Tmem2-201ENSMUST00000025663 6585 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Col8a1Q00780 Dgkq-201ENSMUST00000053913 4938 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Col8a1Q00780 Parp6-201ENSMUST00000026267 2709 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
Col8a1Q00780 Gm26904-201ENSMUST00000181301 1742 ntTSL 5 BASIC12.82□□□□□ -0.36
Col8a1Q00780 Uts2r-201ENSMUST00000039044 1703 ntAPPRIS P1 BASIC12.82□□□□□ -0.36
Col8a1Q00780 Bag4-201ENSMUST00000038498 4876 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Col8a1Q00780 Gnpda2-202ENSMUST00000120789 1594 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Col8a1Q00780 Gm13344-201ENSMUST00000137714 1557 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Col8a1Q00780 Tex261-201ENSMUST00000014892 2984 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Col8a1Q00780 Fam178b-202ENSMUST00000170295 2286 ntAPPRIS ALT2 TSL 5 BASIC12.82□□□□□ -0.36
Col8a1Q00780 Chst10-206ENSMUST00000194361 2996 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Col8a1Q00780 Nagpa-201ENSMUST00000023911 2143 ntAPPRIS P2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Col8a1Q00780 Samd4-211ENSMUST00000228404 3039 ntAPPRIS ALT2 BASIC12.82□□□□□ -0.36
Col8a1Q00780 Fam172a-203ENSMUST00000163257 1436 ntAPPRIS P4 TSL 5 BASIC12.82□□□□□ -0.36
Col8a1Q00780 Cldn9-201ENSMUST00000085989 1435 ntAPPRIS P1 BASIC12.82□□□□□ -0.36
Col8a1Q00780 Xpo6-201ENSMUST00000009344 4455 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
Col8a1Q00780 Vstm5-201ENSMUST00000034413 1991 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Col8a1Q00780 AL691505.1-201ENSMUST00000219965 1618 ntTSL 5 BASIC12.82□□□□□ -0.36
Col8a1Q00780 Ybx1-201ENSMUST00000079644 1628 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Col8a1Q00780 Prelid3a-201ENSMUST00000025411 2167 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Col8a1Q00780 Slpi-201ENSMUST00000109367 876 ntAPPRIS P2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Col8a1Q00780 Abhd11-202ENSMUST00000111216 972 ntTSL 3 BASIC12.82□□□□□ -0.36
Col8a1Q00780 4932443L11Rik-201ENSMUST00000148353 414 ntTSL 5 BASIC12.82□□□□□ -0.36
Col8a1Q00780 Med22-201ENSMUST00000015920 973 ntAPPRIS P4 TSL 2 BASIC12.82□□□□□ -0.36
Col8a1Q00780 Erdr1-204ENSMUST00000179483 688 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Col8a1Q00780 Mir6420-201ENSMUST00000185032 102 ntBASIC12.82□□□□□ -0.36
Col8a1Q00780 Gm29202-201ENSMUST00000191263 422 ntTSL 5 BASIC12.82□□□□□ -0.36
Col8a1Q00780 Gm37596-201ENSMUST00000193565 1021 ntAPPRIS P1 BASIC12.82□□□□□ -0.36
Col8a1Q00780 Idh2-207ENSMUST00000206714 392 ntTSL 3 BASIC12.82□□□□□ -0.36
Col8a1Q00780 Rassf8-202ENSMUST00000058538 1131 ntBASIC12.82□□□□□ -0.36
Col8a1Q00780 Grb7-201ENSMUST00000019456 2397 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Col8a1Q00780 Rab33b-201ENSMUST00000054387 3492 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Col8a1Q00780 Slc13a3-202ENSMUST00000109279 3131 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Col8a1Q00780 Hey2-201ENSMUST00000019924 2550 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Col8a1Q00780 Sirt6-202ENSMUST00000119324 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Col8a1Q00780 Adamts2-201ENSMUST00000040523 7266 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Col8a1Q00780 Zfp219-212ENSMUST00000228580 2812 ntAPPRIS ALT2 BASIC12.82□□□□□ -0.36
Col8a1Q00780 Ambra1-205ENSMUST00000111317 4929 ntTSL 5 BASIC12.82□□□□□ -0.36
Col8a1Q00780 Tnfsf13-202ENSMUST00000108648 1503 ntAPPRIS ALT2 TSL 5 BASIC12.82□□□□□ -0.36
Retrieved 100 of 76,532 protein–RNA pairs in 41.5 ms