Protein–RNA interactions for Protein: O89116

Vti1a, Vesicle transport through interaction with t-SNAREs homolog 1A, mousemouse

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vti1aO89116 Chst10-201ENSMUST00000027249 2975 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
Vti1aO89116 Esrp1-202ENSMUST00000108310 2781 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
Vti1aO89116 Zfp384-208ENSMUST00000112428 3132 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Vti1aO89116 March4-201ENSMUST00000047786 4553 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Vti1aO89116 Lrch3-210ENSMUST00000170201 2902 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
Vti1aO89116 Snn-201ENSMUST00000089011 2902 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Vti1aO89116 Rapgef6-205ENSMUST00000108895 1829 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Vti1aO89116 Gm13365-201ENSMUST00000121188 973 ntBASIC16.25■□□□□ 0.19
Vti1aO89116 9130204K15Rik-201ENSMUST00000131441 867 ntTSL 5 BASIC16.25■□□□□ 0.19
Vti1aO89116 A530058N18Rik-205ENSMUST00000143993 550 ntTSL 3 BASIC16.25■□□□□ 0.19
Vti1aO89116 Gm44335-201ENSMUST00000196879 141 ntBASIC16.25■□□□□ 0.19
Vti1aO89116 Gm44297-201ENSMUST00000198304 141 ntBASIC16.25■□□□□ 0.19
Vti1aO89116 Gm44346-201ENSMUST00000198851 141 ntBASIC16.25■□□□□ 0.19
Vti1aO89116 Abhd18-207ENSMUST00000203892 1021 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Vti1aO89116 Arl3-201ENSMUST00000026009 822 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Vti1aO89116 Erp27-201ENSMUST00000032343 1029 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Vti1aO89116 Hist2h3b-201ENSMUST00000098843 488 ntAPPRIS P1 BASIC16.25■□□□□ 0.19
Vti1aO89116 Ddit4l-201ENSMUST00000053855 2722 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Vti1aO89116 B4galt3-201ENSMUST00000064272 1998 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Vti1aO89116 Syk-203ENSMUST00000120135 5363 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
Vti1aO89116 Nxpe3-201ENSMUST00000099705 6430 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Vti1aO89116 Pdcl3-201ENSMUST00000027247 3914 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Vti1aO89116 Casc3-201ENSMUST00000017384 3963 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
Vti1aO89116 Galt-202ENSMUST00000108038 1859 ntAPPRIS ALT2 TSL 2 BASIC16.25■□□□□ 0.19
Vti1aO89116 Bnipl-202ENSMUST00000107195 1810 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Vti1aO89116 Crk-201ENSMUST00000017920 3642 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Vti1aO89116 Fam103a1-201ENSMUST00000042166 1452 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Vti1aO89116 Adam15-202ENSMUST00000074582 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
Vti1aO89116 Nap1l4-209ENSMUST00000209098 2281 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Vti1aO89116 Tgfa-201ENSMUST00000032066 4527 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Vti1aO89116 Gm3252-201ENSMUST00000165619 1949 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
Vti1aO89116 Zfp821-203ENSMUST00000212000 2081 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Vti1aO89116 Tnnc2-201ENSMUST00000103095 700 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Vti1aO89116 Tmsb10-203ENSMUST00000114050 570 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Vti1aO89116 Tctn3-202ENSMUST00000132452 1271 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
Vti1aO89116 Gm10244-202ENSMUST00000156905 474 ntTSL 3 BASIC16.24■□□□□ 0.19
Vti1aO89116 Skiv2l-ps1-201ENSMUST00000173935 658 ntBASIC16.24■□□□□ 0.19
Vti1aO89116 Erdr1-202ENSMUST00000177671 708 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
Vti1aO89116 1190007I07Rik-204ENSMUST00000183416 637 ntTSL 2 BASIC16.24■□□□□ 0.19
Vti1aO89116 March3-201ENSMUST00000035278 860 ntAPPRIS P1 TSL 3 BASIC16.24■□□□□ 0.19
Vti1aO89116 Gapdh-201ENSMUST00000073605 1272 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Vti1aO89116 Eif2b1-201ENSMUST00000031334 2013 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Vti1aO89116 Ube2d3-208ENSMUST00000197134 2493 ntAPPRIS ALT1 TSL 5 BASIC16.24■□□□□ 0.19
Vti1aO89116 Arntl-201ENSMUST00000047321 2908 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Vti1aO89116 Ldha-210ENSMUST00000209984 1815 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Vti1aO89116 Lrrc57-202ENSMUST00000102497 1962 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Vti1aO89116 Kdm6a-201ENSMUST00000044484 5918 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
Vti1aO89116 Kdm6a-202ENSMUST00000052368 5935 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Vti1aO89116 Gdpd2-202ENSMUST00000113744 2427 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Vti1aO89116 Cpeb3-201ENSMUST00000079754 5899 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
Vti1aO89116 Kdm6b-201ENSMUST00000094077 6654 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
Vti1aO89116 Med20-201ENSMUST00000024778 2054 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Vti1aO89116 Psmb10-201ENSMUST00000034369 1311 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Vti1aO89116 Ccdc158-204ENSMUST00000151180 3352 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Vti1aO89116 Cilp2-201ENSMUST00000057831 4314 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
Vti1aO89116 Kif1c-201ENSMUST00000072187 5046 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
Vti1aO89116 Rcor1-202ENSMUST00000116388 2720 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
Vti1aO89116 Gm13616-201ENSMUST00000120600 222 ntBASIC16.23■□□□□ 0.19
Vti1aO89116 Arpp19-210ENSMUST00000170308 429 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
Vti1aO89116 Rabep1-208ENSMUST00000179114 1264 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Vti1aO89116 Gm40123-201ENSMUST00000198175 1027 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Vti1aO89116 Gm5312-201ENSMUST00000203728 547 ntBASIC16.23■□□□□ 0.19
Vti1aO89116 Cbl-204ENSMUST00000205968 2809 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Vti1aO89116 Tbc1d1-203ENSMUST00000119756 4760 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
Vti1aO89116 Tmem237-201ENSMUST00000087475 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
Vti1aO89116 Alpl-201ENSMUST00000030551 2522 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Vti1aO89116 Lrr1-201ENSMUST00000110621 1500 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Vti1aO89116 Arap3-201ENSMUST00000042944 5224 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Vti1aO89116 Samd4-204ENSMUST00000125688 1773 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Vti1aO89116 Ptpa-203ENSMUST00000113603 2169 ntTSL 5 BASIC16.23■□□□□ 0.19
Vti1aO89116 Dock1-206ENSMUST00000211593 2589 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Vti1aO89116 Zfp612-202ENSMUST00000212754 4863 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Vti1aO89116 Wipi1-201ENSMUST00000047186 3338 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Vti1aO89116 4933434E20Rik-204ENSMUST00000159064 1344 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Vti1aO89116 4933412A08Rik-201ENSMUST00000061046 1343 ntBASIC16.22■□□□□ 0.19
Vti1aO89116 Tnfrsf13c-202ENSMUST00000109535 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
Vti1aO89116 Mon1b-201ENSMUST00000035777 4998 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Vti1aO89116 Agap1-202ENSMUST00000074945 10069 ntTSL 5 BASIC16.22■□□□□ 0.19
Vti1aO89116 Gps1-208ENSMUST00000208737 1843 ntAPPRIS ALT1 TSL 5 BASIC16.22■□□□□ 0.19
Vti1aO89116 Pigb-207ENSMUST00000184389 2079 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Vti1aO89116 Col4a2-201ENSMUST00000033899 6450 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Vti1aO89116 Notch3-201ENSMUST00000087723 8044 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Vti1aO89116 Ankrd10-202ENSMUST00000169782 5156 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Vti1aO89116 Chst3-203ENSMUST00000167915 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
Vti1aO89116 Ndufv1-201ENSMUST00000042497 1661 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
Vti1aO89116 Arfgap2-202ENSMUST00000080008 3068 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Vti1aO89116 Adprm-201ENSMUST00000116363 1283 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Vti1aO89116 Arid2-202ENSMUST00000134985 809 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Vti1aO89116 Nmur1-202ENSMUST00000212058 1287 ntAPPRIS P3 TSL 5 BASIC16.22■□□□□ 0.19
Vti1aO89116 Thap2-203ENSMUST00000218989 527 ntBASIC16.22■□□□□ 0.19
Vti1aO89116 Gm40977-203ENSMUST00000222324 886 ntTSL 2 BASIC16.22■□□□□ 0.19
Vti1aO89116 Lce1f-201ENSMUST00000047153 728 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Vti1aO89116 Fzd7-201ENSMUST00000114246 4532 ntAPPRIS P1 BASIC16.22■□□□□ 0.19
Vti1aO89116 Fancm-201ENSMUST00000058889 7775 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Vti1aO89116 Gm13332-201ENSMUST00000120451 1398 ntBASIC16.22■□□□□ 0.19
Vti1aO89116 Ext2-201ENSMUST00000028623 2871 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Vti1aO89116 Tmem183a-201ENSMUST00000049470 3149 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Vti1aO89116 Dlg4-201ENSMUST00000018700 3204 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
Vti1aO89116 B3gnt5-202ENSMUST00000119468 2229 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Vti1aO89116 Asl-205ENSMUST00000161094 1824 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Retrieved 100 of 76,532 protein–RNA pairs in 58.4 ms