Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Gm37711-201ENSMUST00000194907 1749 ntTSL 5 BASIC16.63■□□□□ 0.25
Prpf40aQ9R1C7 Gm11185-201ENSMUST00000117732 1007 ntBASIC16.63■□□□□ 0.25
Prpf40aQ9R1C7 Csrp3-202ENSMUST00000167786 899 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Prpf40aQ9R1C7 Gm18489-201ENSMUST00000172565 551 ntBASIC16.63■□□□□ 0.25
Prpf40aQ9R1C7 Flg-204ENSMUST00000178752 756 ntAPPRIS ALT2 BASIC16.63■□□□□ 0.25
Prpf40aQ9R1C7 Trmu-201ENSMUST00000023019 1526 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Prpf40aQ9R1C7 Prrt2-201ENSMUST00000159916 2501 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
Prpf40aQ9R1C7 Nat8f3-202ENSMUST00000168531 1347 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Prpf40aQ9R1C7 Ppp4r4-201ENSMUST00000021631 3964 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Prpf40aQ9R1C7 Cul3-201ENSMUST00000163119 4709 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Prpf40aQ9R1C7 Zfp606-201ENSMUST00000098822 4748 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
Prpf40aQ9R1C7 Csnk2a2-201ENSMUST00000056919 3773 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Prpf40aQ9R1C7 P2rx6-203ENSMUST00000171002 1353 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Prpf40aQ9R1C7 Cyp2d10-201ENSMUST00000072776 1647 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Prpf40aQ9R1C7 Prdm4-207ENSMUST00000220032 3962 ntTSL 5 BASIC16.62■□□□□ 0.25
Prpf40aQ9R1C7 Rnps1-203ENSMUST00000163717 1920 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
Prpf40aQ9R1C7 Psmc4-201ENSMUST00000032824 1440 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Prpf40aQ9R1C7 Bbs10-201ENSMUST00000040454 2744 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
Prpf40aQ9R1C7 Cdk18-201ENSMUST00000027697 4355 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Prpf40aQ9R1C7 Gpr3-202ENSMUST00000105911 2518 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
Prpf40aQ9R1C7 Cdk16-201ENSMUST00000033380 3120 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Prpf40aQ9R1C7 Dnajc2-202ENSMUST00000115192 1132 ntTSL 2 BASIC16.62■□□□□ 0.25
Prpf40aQ9R1C7 Sec22b-202ENSMUST00000122288 1177 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Prpf40aQ9R1C7 Enkd1-201ENSMUST00000013299 1275 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Prpf40aQ9R1C7 Hmgb1-208ENSMUST00000139443 923 ntTSL 2 BASIC16.62■□□□□ 0.25
Prpf40aQ9R1C7 Tmem9-205ENSMUST00000165125 901 ntAPPRIS P1 TSL 3 BASIC16.62■□□□□ 0.25
Prpf40aQ9R1C7 Gm18733-201ENSMUST00000173950 856 ntBASIC16.62■□□□□ 0.25
Prpf40aQ9R1C7 Stum-205ENSMUST00000211561 1063 ntAPPRIS ALT1 TSL 5 BASIC16.62■□□□□ 0.25
Prpf40aQ9R1C7 Tpbg-201ENSMUST00000006559 3603 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Prpf40aQ9R1C7 A230087F16Rik-202ENSMUST00000181561 1303 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Prpf40aQ9R1C7 P3h1-204ENSMUST00000121111 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Prpf40aQ9R1C7 Ncf1-205ENSMUST00000144086 2882 ntTSL 2 BASIC16.62■□□□□ 0.25
Prpf40aQ9R1C7 Unc93b1-203ENSMUST00000162708 2266 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
Prpf40aQ9R1C7 Kif12-201ENSMUST00000030042 2250 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Prpf40aQ9R1C7 Chst3-203ENSMUST00000167915 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Prpf40aQ9R1C7 Slk-202ENSMUST00000051691 4239 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
Prpf40aQ9R1C7 Ano10-201ENSMUST00000042546 2653 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Prpf40aQ9R1C7 Tle2-205ENSMUST00000135211 2746 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Prpf40aQ9R1C7 Prickle1-201ENSMUST00000048982 4085 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Prpf40aQ9R1C7 Pdpk1-201ENSMUST00000052462 1832 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Prpf40aQ9R1C7 Lrrc56-201ENSMUST00000047093 2197 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
Prpf40aQ9R1C7 Arhgap44-203ENSMUST00000093002 3982 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
Prpf40aQ9R1C7 Rnf114-202ENSMUST00000109214 3001 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Prpf40aQ9R1C7 Hnrnpul1-205ENSMUST00000206832 3784 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Prpf40aQ9R1C7 Tpgs2-202ENSMUST00000148255 3424 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Prpf40aQ9R1C7 4930481B07Rik-201ENSMUST00000128160 1089 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Prpf40aQ9R1C7 Gm11467-201ENSMUST00000129407 674 ntTSL 3 BASIC16.61■□□□□ 0.25
Prpf40aQ9R1C7 Mkln1os-202ENSMUST00000144232 964 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Prpf40aQ9R1C7 Mir5131-201ENSMUST00000175426 93 ntBASIC16.61■□□□□ 0.25
Prpf40aQ9R1C7 Pard6a-204ENSMUST00000212352 1234 ntTSL 2 BASIC16.61■□□□□ 0.25
Prpf40aQ9R1C7 Sod1-201ENSMUST00000023707 646 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Prpf40aQ9R1C7 2210406O10Rik-201ENSMUST00000044964 937 ntTSL 5 BASIC16.61■□□□□ 0.25
Prpf40aQ9R1C7 Psma5-201ENSMUST00000090569 1239 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Prpf40aQ9R1C7 Acd-201ENSMUST00000042608 3154 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Prpf40aQ9R1C7 E430024P14Rik-202ENSMUST00000160177 2050 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Prpf40aQ9R1C7 Cand2-201ENSMUST00000075995 5474 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Prpf40aQ9R1C7 Abr-203ENSMUST00000094012 5236 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Prpf40aQ9R1C7 Galnt6os-201ENSMUST00000160960 1389 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Prpf40aQ9R1C7 4933421O10Rik-201ENSMUST00000155691 3847 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Prpf40aQ9R1C7 Gm15559-201ENSMUST00000132267 2260 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Prpf40aQ9R1C7 Zfp385a-201ENSMUST00000168828 2291 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Prpf40aQ9R1C7 Glb1-201ENSMUST00000063042 2396 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Prpf40aQ9R1C7 Rbfox3-203ENSMUST00000103023 2809 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Prpf40aQ9R1C7 1700051A21Rik-201ENSMUST00000147937 1516 ntTSL 5 BASIC16.6■□□□□ 0.25
Prpf40aQ9R1C7 Clns1a-201ENSMUST00000026506 1504 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Prpf40aQ9R1C7 Gmppa-201ENSMUST00000037796 1539 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Prpf40aQ9R1C7 Dnajc2-203ENSMUST00000115193 2416 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Prpf40aQ9R1C7 Fgfr3-203ENSMUST00000114411 4225 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
Prpf40aQ9R1C7 Bin2-207ENSMUST00000183211 2036 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
Prpf40aQ9R1C7 Rnf123-201ENSMUST00000047746 4722 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
Prpf40aQ9R1C7 Plch2-212ENSMUST00000186598 2119 ntTSL 5 BASIC16.6■□□□□ 0.25
Prpf40aQ9R1C7 Ric8b-201ENSMUST00000038523 3069 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Prpf40aQ9R1C7 Slc4a5-203ENSMUST00000113900 3630 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
Prpf40aQ9R1C7 R3hcc1-201ENSMUST00000118374 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Prpf40aQ9R1C7 Fam241b-204ENSMUST00000125704 1769 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Prpf40aQ9R1C7 Sdhb-201ENSMUST00000010007 1142 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Prpf40aQ9R1C7 Gm15677-201ENSMUST00000152302 766 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Prpf40aQ9R1C7 Gm5682-201ENSMUST00000173402 505 ntBASIC16.6■□□□□ 0.25
Prpf40aQ9R1C7 Gsdmcl2-204ENSMUST00000186026 736 ntBASIC16.6■□□□□ 0.25
Prpf40aQ9R1C7 Gsdmcl1-202ENSMUST00000190937 735 ntBASIC16.6■□□□□ 0.25
Prpf40aQ9R1C7 Gm2651-201ENSMUST00000203560 838 ntBASIC16.6■□□□□ 0.25
Prpf40aQ9R1C7 AC140264.2-201ENSMUST00000219668 289 ntTSL 2 BASIC16.6■□□□□ 0.25
Prpf40aQ9R1C7 Izumo1r-201ENSMUST00000034409 1291 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Prpf40aQ9R1C7 Timm8a2-201ENSMUST00000045976 913 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Prpf40aQ9R1C7 Ube2f-201ENSMUST00000059743 1154 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Prpf40aQ9R1C7 Sdhc-201ENSMUST00000081560 815 ntTSL 3 BASIC16.6■□□□□ 0.25
Prpf40aQ9R1C7 Gm15998-201ENSMUST00000135144 1844 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Prpf40aQ9R1C7 Mindy1-212ENSMUST00000168223 1812 ntTSL 5 BASIC16.6■□□□□ 0.25
Prpf40aQ9R1C7 Kcnh4-202ENSMUST00000107363 3948 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
Prpf40aQ9R1C7 Derl3-202ENSMUST00000217811 1316 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Prpf40aQ9R1C7 Trank1-201ENSMUST00000078626 10520 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
Prpf40aQ9R1C7 Ggnbp2-213ENSMUST00000172405 2950 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Prpf40aQ9R1C7 Slc16a6-202ENSMUST00000070152 4219 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
Prpf40aQ9R1C7 Gss-201ENSMUST00000079691 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Prpf40aQ9R1C7 Capn1-201ENSMUST00000025891 3100 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Prpf40aQ9R1C7 Fzd6-202ENSMUST00000179165 4325 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Prpf40aQ9R1C7 Dhx16-201ENSMUST00000025292 3351 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Prpf40aQ9R1C7 Ptpn2-201ENSMUST00000025420 1568 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
Prpf40aQ9R1C7 Pptc7-202ENSMUST00000119015 2233 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Prpf40aQ9R1C7 Rhpn1-202ENSMUST00000121137 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Retrieved 100 of 76,532 protein–RNA pairs in 31.2 ms