Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Nadk2-203ENSMUST00000100790 3665 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
Scn11aQ9R053 Zmym3-208ENSMUST00000121429 1890 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Scn11aQ9R053 Gm16137-201ENSMUST00000161571 664 ntTSL 5 BASIC17.71■□□□□ 0.43
Scn11aQ9R053 Gm36236-201ENSMUST00000220780 701 ntTSL 3 BASIC17.71■□□□□ 0.43
Scn11aQ9R053 Mrps21-202ENSMUST00000072587 405 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Scn11aQ9R053 Rarg-202ENSMUST00000063339 2718 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.42
Scn11aQ9R053 Tcf3-210ENSMUST00000105346 2839 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Scn11aQ9R053 Stat3-207ENSMUST00000138438 2506 ntTSL 5 BASIC17.7■□□□□ 0.42
Scn11aQ9R053 Zfp764-201ENSMUST00000059199 2508 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Scn11aQ9R053 Tmem119-201ENSMUST00000067853 2242 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Scn11aQ9R053 Rsrc1-205ENSMUST00000161726 3213 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Scn11aQ9R053 Adam15-202ENSMUST00000074582 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Scn11aQ9R053 Tmem248-202ENSMUST00000111298 3570 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Scn11aQ9R053 Fam171a1-203ENSMUST00000091505 3449 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Scn11aQ9R053 Vps37c-201ENSMUST00000087951 2415 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Scn11aQ9R053 AI606473-201ENSMUST00000177201 1731 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Scn11aQ9R053 Vav1-204ENSMUST00000169220 2810 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Scn11aQ9R053 Slc8b1-202ENSMUST00000076051 2661 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Scn11aQ9R053 Plekhm2-202ENSMUST00000084203 4136 ntAPPRIS P3 TSL 5 BASIC17.7■□□□□ 0.42
Scn11aQ9R053 Asic1-205ENSMUST00000228185 1818 ntBASIC17.7■□□□□ 0.42
Scn11aQ9R053 Tmtc4-201ENSMUST00000037726 3416 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Scn11aQ9R053 Crybb3-205ENSMUST00000120506 804 ntAPPRIS P1 TSL 3 BASIC17.7■□□□□ 0.42
Scn11aQ9R053 1010001B22Rik-201ENSMUST00000181488 589 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Scn11aQ9R053 Gm26808-201ENSMUST00000181569 411 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Scn11aQ9R053 Gm30437-201ENSMUST00000206086 1201 ntBASIC17.7■□□□□ 0.42
Scn11aQ9R053 Pim2-204ENSMUST00000223553 1113 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Scn11aQ9R053 Mlf1-202ENSMUST00000077916 1114 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Scn11aQ9R053 Dtx2-204ENSMUST00000111145 2493 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Scn11aQ9R053 Fam219a-201ENSMUST00000108049 3296 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Scn11aQ9R053 Spns1-203ENSMUST00000119846 2017 ntTSL 5 BASIC17.7■□□□□ 0.42
Scn11aQ9R053 Kcnj14-201ENSMUST00000071937 2681 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Scn11aQ9R053 Abraxas1-202ENSMUST00000055245 2139 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Scn11aQ9R053 Mprip-202ENSMUST00000072031 8718 ntAPPRIS P4 TSL 1 (best) BASIC17.7■□□□□ 0.42
Scn11aQ9R053 Gatsl3-201ENSMUST00000020699 1574 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Scn11aQ9R053 Agap2-201ENSMUST00000039259 5633 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Scn11aQ9R053 Fam219b-201ENSMUST00000093833 3001 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Scn11aQ9R053 Nfix-203ENSMUST00000109762 2261 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Scn11aQ9R053 Rnd1-203ENSMUST00000120997 856 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Scn11aQ9R053 Gm24694-201ENSMUST00000180054 110 ntBASIC17.69■□□□□ 0.42
Scn11aQ9R053 Gm27663-201ENSMUST00000184839 110 ntBASIC17.69■□□□□ 0.42
Scn11aQ9R053 Gm9063-201ENSMUST00000223299 582 ntBASIC17.69■□□□□ 0.42
Scn11aQ9R053 Ufsp1-201ENSMUST00000052825 1037 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
Scn11aQ9R053 Rhox9-201ENSMUST00000089062 882 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Scn11aQ9R053 Efhd1-201ENSMUST00000027472 1854 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Scn11aQ9R053 Spock1-203ENSMUST00000185905 2794 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Scn11aQ9R053 Agfg1-201ENSMUST00000063380 2896 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Scn11aQ9R053 Snx14-206ENSMUST00000173039 2970 ntTSL 5 BASIC17.69■□□□□ 0.42
Scn11aQ9R053 Gm14780-201ENSMUST00000118387 2737 ntBASIC17.69■□□□□ 0.42
Scn11aQ9R053 Klhdc4-210ENSMUST00000174717 1662 ntTSL 5 BASIC17.69■□□□□ 0.42
Scn11aQ9R053 Kdelc2-201ENSMUST00000037853 3642 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Scn11aQ9R053 Fam214b-204ENSMUST00000107958 3280 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Scn11aQ9R053 Oprl1-203ENSMUST00000108766 1241 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Scn11aQ9R053 Ndufv3-205ENSMUST00000191598 642 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Scn11aQ9R053 5430427M07Rik-202ENSMUST00000221524 1023 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Scn11aQ9R053 C130074G19Rik-201ENSMUST00000048308 3035 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Scn11aQ9R053 Gm16011-201ENSMUST00000121567 2662 ntBASIC17.68■□□□□ 0.42
Scn11aQ9R053 St3gal3-202ENSMUST00000097912 2143 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Scn11aQ9R053 Prkci-201ENSMUST00000108249 4708 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Scn11aQ9R053 Krt25-201ENSMUST00000038004 1989 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Scn11aQ9R053 Nkpd1-202ENSMUST00000207576 2916 ntAPPRIS P2 TSL 5 BASIC17.68■□□□□ 0.42
Scn11aQ9R053 Ywhaq-201ENSMUST00000049531 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Scn11aQ9R053 Rnf14-203ENSMUST00000171461 3351 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Scn11aQ9R053 Uri1-201ENSMUST00000085513 3441 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Scn11aQ9R053 Gab2-201ENSMUST00000004622 6168 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
Scn11aQ9R053 4930417O22Rik-201ENSMUST00000123249 1184 ntTSL 2 BASIC17.68■□□□□ 0.42
Scn11aQ9R053 Mocs2-207ENSMUST00000166104 1193 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Scn11aQ9R053 Rsph9-201ENSMUST00000024762 966 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Scn11aQ9R053 Tmem59l-201ENSMUST00000045286 1491 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Scn11aQ9R053 Hnrnpr-202ENSMUST00000105850 2683 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Scn11aQ9R053 Mau2-204ENSMUST00000212308 2887 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Scn11aQ9R053 Sox12-201ENSMUST00000063332 4169 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
Scn11aQ9R053 Gnb1-201ENSMUST00000030940 3131 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Scn11aQ9R053 Hebp2-201ENSMUST00000020000 2535 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Scn11aQ9R053 Zufsp-205ENSMUST00000218880 2005 ntTSL 5 BASIC17.67■□□□□ 0.42
Scn11aQ9R053 2810006K23Rik-202ENSMUST00000111477 1637 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Scn11aQ9R053 Fahd1-201ENSMUST00000049642 1407 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
Scn11aQ9R053 Foxp4-203ENSMUST00000113263 3156 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
Scn11aQ9R053 Arpin-201ENSMUST00000048731 2277 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Scn11aQ9R053 Gm8334-201ENSMUST00000112755 1662 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
Scn11aQ9R053 Rps6ka1-201ENSMUST00000003741 3085 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Scn11aQ9R053 Trav13-3-201ENSMUST00000117226 336 ntBASIC17.67■□□□□ 0.42
Scn11aQ9R053 Mrpl40-202ENSMUST00000119273 778 ntTSL 3 BASIC17.67■□□□□ 0.42
Scn11aQ9R053 Gm15487-201ENSMUST00000122373 465 ntBASIC17.67■□□□□ 0.42
Scn11aQ9R053 Gm13496-201ENSMUST00000141133 1165 ntTSL 2 BASIC17.67■□□□□ 0.42
Scn11aQ9R053 Prr29-203ENSMUST00000185986 983 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
Scn11aQ9R053 Fmc1-201ENSMUST00000019833 479 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Scn11aQ9R053 Ggn-205ENSMUST00000209019 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Scn11aQ9R053 Sema3b-202ENSMUST00000102529 2875 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Scn11aQ9R053 Pgm1-201ENSMUST00000087324 2369 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Scn11aQ9R053 Ccdc85c-202ENSMUST00000222310 4298 ntAPPRIS P2 TSL 5 BASIC17.67■□□□□ 0.42
Scn11aQ9R053 Klhdc10-202ENSMUST00000068259 5901 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Scn11aQ9R053 Ggh-201ENSMUST00000098242 1965 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Scn11aQ9R053 Apoa5-201ENSMUST00000034584 2312 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Scn11aQ9R053 Olfr160-203ENSMUST00000215727 1667 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
Scn11aQ9R053 Vav3-201ENSMUST00000046864 5019 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Scn11aQ9R053 Chp2-201ENSMUST00000033152 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Scn11aQ9R053 Tmem204-201ENSMUST00000024984 1846 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Scn11aQ9R053 Car10-205ENSMUST00000107861 2613 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Scn11aQ9R053 Ighv5-17-201ENSMUST00000103459 405 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
Scn11aQ9R053 Gm22189-201ENSMUST00000103822 86 ntBASIC17.66■□□□□ 0.42
Retrieved 100 of 76,532 protein–RNA pairs in 26.4 ms