Protein–RNA interactions for Protein: Q99LC2

Cstf1, Cleavage stimulation factor subunit 1, mousemouse

Known RBP Predictions only

Length 431 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cstf1Q99LC2 Gm9824-201ENSMUST00000178707 561 ntBASIC15.1■□□□□ 0.01
Cstf1Q99LC2 4930478K11Rik-201ENSMUST00000181875 715 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Cstf1Q99LC2 Atp6v0c-202ENSMUST00000098862 796 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
Cstf1Q99LC2 Gm40773-201ENSMUST00000218113 1502 ntTSL 5 BASIC15.1■□□□□ 0.01
Cstf1Q99LC2 Trmu-201ENSMUST00000023019 1526 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Cstf1Q99LC2 Dpm1-209ENSMUST00000154111 2293 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Cstf1Q99LC2 Adss-201ENSMUST00000016105 2771 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Cstf1Q99LC2 Tor1b-201ENSMUST00000028199 3039 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Cstf1Q99LC2 Tmem88-201ENSMUST00000050140 1582 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Cstf1Q99LC2 Zmym3-201ENSMUST00000063577 6057 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Cstf1Q99LC2 Gjb3-202ENSMUST00000106091 1623 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Cstf1Q99LC2 Sphk1-206ENSMUST00000106388 1891 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
Cstf1Q99LC2 App-201ENSMUST00000005406 3176 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Cstf1Q99LC2 Cpq-201ENSMUST00000042167 1923 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Cstf1Q99LC2 Gale-202ENSMUST00000102541 1430 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Cstf1Q99LC2 Rhpn2-201ENSMUST00000032705 3508 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Cstf1Q99LC2 Exoc8-201ENSMUST00000098312 4598 ntAPPRIS P1 BASIC15.09■□□□□ 0.01
Cstf1Q99LC2 Gm128-201ENSMUST00000090815 1959 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Cstf1Q99LC2 Tmem150b-202ENSMUST00000086364 2822 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Cstf1Q99LC2 Trmt2a-203ENSMUST00000115640 2367 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Cstf1Q99LC2 Sept6-203ENSMUST00000115239 1845 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Cstf1Q99LC2 H60b-201ENSMUST00000105522 1029 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Cstf1Q99LC2 Gm7488-201ENSMUST00000117148 684 ntBASIC15.09■□□□□ 0.01
Cstf1Q99LC2 AC155937.1-202ENSMUST00000156229 621 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
Cstf1Q99LC2 Ift27-201ENSMUST00000016781 1012 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Cstf1Q99LC2 Rac3-201ENSMUST00000018156 1076 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Cstf1Q99LC2 AC151828.1-201ENSMUST00000219552 661 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Cstf1Q99LC2 Dnal1-201ENSMUST00000046340 790 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Cstf1Q99LC2 Rps15-201ENSMUST00000062674 572 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Cstf1Q99LC2 Rtp2-201ENSMUST00000061030 2421 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Cstf1Q99LC2 Syt7-205ENSMUST00000224135 1557 ntBASIC15.09■□□□□ 0.01
Cstf1Q99LC2 Mfng-201ENSMUST00000018313 1865 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Cstf1Q99LC2 Fam78b-206ENSMUST00000190081 4666 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Cstf1Q99LC2 Dbnl-202ENSMUST00000102928 2295 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
Cstf1Q99LC2 Rab22a-201ENSMUST00000029024 7155 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Cstf1Q99LC2 Mars-201ENSMUST00000037290 2939 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Cstf1Q99LC2 Rccd1-202ENSMUST00000121882 2324 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
Cstf1Q99LC2 Grm4-201ENSMUST00000118161 4537 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
Cstf1Q99LC2 Tmtc4-204ENSMUST00000126867 2952 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
Cstf1Q99LC2 Gxylt2-201ENSMUST00000032157 7658 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Cstf1Q99LC2 Spg21-201ENSMUST00000034955 2680 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Cstf1Q99LC2 Asf1b-201ENSMUST00000005607 1788 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Cstf1Q99LC2 Tcp1-209ENSMUST00000151287 2446 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Cstf1Q99LC2 Zfp384-207ENSMUST00000112427 3072 ntAPPRIS P2 TSL 5 BASIC15.08■□□□□ 0.01
Cstf1Q99LC2 Stk11-202ENSMUST00000105370 1474 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
Cstf1Q99LC2 Zc3h14-204ENSMUST00000110105 3514 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Cstf1Q99LC2 Rab7-203ENSMUST00000113597 1859 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Cstf1Q99LC2 Ccbe1-202ENSMUST00000130300 1631 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Cstf1Q99LC2 1700108N11Rik-201ENSMUST00000153051 917 ntTSL 2 BASIC15.08■□□□□ 0
Cstf1Q99LC2 Emp3-202ENSMUST00000164119 784 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Cstf1Q99LC2 Gm38225-201ENSMUST00000194001 393 ntBASIC15.08■□□□□ 0
Cstf1Q99LC2 5830408C22Rik-201ENSMUST00000210072 1115 ntTSL 5 BASIC15.08■□□□□ 0
Cstf1Q99LC2 9230110C19Rik-202ENSMUST00000215478 533 ntTSL 1 (best) BASIC15.08■□□□□ 0
Cstf1Q99LC2 Rbfox2-208ENSMUST00000227930 1218 ntBASIC15.08■□□□□ 0
Cstf1Q99LC2 Chuk-202ENSMUST00000119591 3481 ntTSL 1 (best) BASIC15.08■□□□□ 0
Cstf1Q99LC2 T-201ENSMUST00000074667 2046 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Cstf1Q99LC2 Foxo1-201ENSMUST00000053764 8665 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Cstf1Q99LC2 Usp27x-201ENSMUST00000115744 3240 ntAPPRIS P1 BASIC15.08■□□□□ 0
Cstf1Q99LC2 Dcaf17-203ENSMUST00000112159 2490 ntTSL 1 (best) BASIC15.08■□□□□ 0
Cstf1Q99LC2 Fus-203ENSMUST00000106251 5536 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0
Cstf1Q99LC2 Tbc1d10b-201ENSMUST00000120705 3614 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Cstf1Q99LC2 Spag16-201ENSMUST00000065425 2126 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Cstf1Q99LC2 Slit1-203ENSMUST00000169141 5673 ntTSL 5 BASIC15.08■□□□□ 0
Cstf1Q99LC2 Ubn1-201ENSMUST00000052449 6455 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Cstf1Q99LC2 Glg1-204ENSMUST00000169020 7021 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Cstf1Q99LC2 Bnipl-202ENSMUST00000107195 1810 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Cstf1Q99LC2 Sept11-205ENSMUST00000201700 3478 ntAPPRIS ALT1 TSL 2 BASIC15.08■□□□□ 0
Cstf1Q99LC2 Ythdc2-201ENSMUST00000037763 7215 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Cstf1Q99LC2 Clgn-202ENSMUST00000109831 2293 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Cstf1Q99LC2 Nrip2-201ENSMUST00000001561 1893 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Cstf1Q99LC2 Tmtc2-201ENSMUST00000061506 5629 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Cstf1Q99LC2 Rcn3-208ENSMUST00000211352 1453 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Cstf1Q99LC2 Traf5-201ENSMUST00000085573 1964 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
Cstf1Q99LC2 Pqlc1-202ENSMUST00000091798 1989 ntAPPRIS P3 TSL 5 BASIC15.07■□□□□ 0
Cstf1Q99LC2 Naa35-201ENSMUST00000022038 3793 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Cstf1Q99LC2 Gnpda2-202ENSMUST00000120789 1594 ntTSL 1 (best) BASIC15.07■□□□□ 0
Cstf1Q99LC2 Dpys-201ENSMUST00000022915 2466 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Cstf1Q99LC2 Atp5a1-201ENSMUST00000026495 2471 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Cstf1Q99LC2 Rnf103-202ENSMUST00000114178 3431 ntTSL 1 (best) BASIC15.07■□□□□ 0
Cstf1Q99LC2 Snx8-204ENSMUST00000196130 2547 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
Cstf1Q99LC2 Nefh-201ENSMUST00000093369 3994 ntAPPRIS P1 TSL 2 BASIC15.07■□□□□ 0
Cstf1Q99LC2 Slco3a1-201ENSMUST00000026897 4589 ntAPPRIS P4 TSL 1 (best) BASIC15.07■□□□□ 0
Cstf1Q99LC2 Chst5-201ENSMUST00000034430 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Cstf1Q99LC2 Tmem214-201ENSMUST00000114716 2220 ntAPPRIS ALT2 TSL 5 BASIC15.07■□□□□ 0
Cstf1Q99LC2 Krt83-201ENSMUST00000023718 1756 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Cstf1Q99LC2 Nosip-202ENSMUST00000107829 972 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
Cstf1Q99LC2 Rgs19-204ENSMUST00000108772 779 ntTSL 1 (best) BASIC15.07■□□□□ 0
Cstf1Q99LC2 Kctd10-201ENSMUST00000001125 1026 ntAPPRIS ALT1 TSL 5 BASIC15.07■□□□□ 0
Cstf1Q99LC2 Hist3h2bb-ps-201ENSMUST00000117558 465 ntBASIC15.07■□□□□ 0
Cstf1Q99LC2 BC028777-201ENSMUST00000137883 985 ntTSL 1 (best) BASIC15.07■□□□□ 0
Cstf1Q99LC2 Unkl-205ENSMUST00000161679 1053 ntTSL 5 BASIC15.07■□□□□ 0
Cstf1Q99LC2 Gm16215-201ENSMUST00000161990 637 ntBASIC15.07■□□□□ 0
Cstf1Q99LC2 Tmprss5-204ENSMUST00000167095 1146 ntAPPRIS ALT2 TSL 5 BASIC15.07■□□□□ 0
Cstf1Q99LC2 Gm5819-201ENSMUST00000171469 465 ntAPPRIS P1 BASIC15.07■□□□□ 0
Cstf1Q99LC2 Gm18737-201ENSMUST00000173594 937 ntBASIC15.07■□□□□ 0
Cstf1Q99LC2 Gltpd2-202ENSMUST00000179000 794 ntAPPRIS ALT2 TSL 2 BASIC15.07■□□□□ 0
Cstf1Q99LC2 Gm18187-201ENSMUST00000196476 984 ntBASIC15.07■□□□□ 0
Cstf1Q99LC2 Irs3-202ENSMUST00000196511 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
Cstf1Q99LC2 Haspin-201ENSMUST00000052140 2810 ntAPPRIS P1 BASIC15.07■□□□□ 0
Cstf1Q99LC2 Kcnq2-204ENSMUST00000103047 2899 ntTSL 1 (best) BASIC15.07■□□□□ 0
Retrieved 100 of 76,532 protein–RNA pairs in 42.1 ms