Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Tex264-201ENSMUST00000046735 1391 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Usp40Q8BWR4 Eef1akmt4-201ENSMUST00000115522 1130 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Usp40Q8BWR4 4930408O17Rik-202ENSMUST00000222624 1131 ntTSL 5 BASIC20.65■□□□□ 0.9
Usp40Q8BWR4 Smim8-201ENSMUST00000029972 786 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Usp40Q8BWR4 Rpl10-ps2-201ENSMUST00000098432 645 ntBASIC20.65■□□□□ 0.9
Usp40Q8BWR4 Taf5-201ENSMUST00000026027 3258 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Usp40Q8BWR4 Enpp1-202ENSMUST00000105520 6777 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
Usp40Q8BWR4 Igf2-205ENSMUST00000121128 4722 ntTSL 2 BASIC20.65■□□□□ 0.9
Usp40Q8BWR4 Pou2f3-202ENSMUST00000176636 2522 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Usp40Q8BWR4 Tom1l2-205ENSMUST00000102682 2256 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Usp40Q8BWR4 Fmnl2-202ENSMUST00000050719 3380 ntTSL 5 BASIC20.65■□□□□ 0.9
Usp40Q8BWR4 Chst8-204ENSMUST00000205259 1980 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
Usp40Q8BWR4 Spsb3-201ENSMUST00000024976 1947 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
Usp40Q8BWR4 8430429K09Rik-204ENSMUST00000146456 1675 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
Usp40Q8BWR4 Iqsec2-202ENSMUST00000112604 5967 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.9
Usp40Q8BWR4 Gal3st1-203ENSMUST00000109981 1600 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Usp40Q8BWR4 Rnf25-202ENSMUST00000113721 1451 ntAPPRIS ALT1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Usp40Q8BWR4 Ppef2-201ENSMUST00000031359 2274 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Usp40Q8BWR4 Tmem199-201ENSMUST00000052566 1347 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Usp40Q8BWR4 Nr2f1-202ENSMUST00000125176 841 ntTSL 5 BASIC20.64■□□□□ 0.89
Usp40Q8BWR4 Gm18766-201ENSMUST00000189811 808 ntBASIC20.64■□□□□ 0.89
Usp40Q8BWR4 A430035B10Rik-204ENSMUST00000148063 2010 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Usp40Q8BWR4 Mbd6-201ENSMUST00000026476 4165 ntAPPRIS P3 TSL 5 BASIC20.64■□□□□ 0.89
Usp40Q8BWR4 Galt-202ENSMUST00000108038 1859 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.89
Usp40Q8BWR4 Zfyve27-201ENSMUST00000099443 2573 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
Usp40Q8BWR4 Vps51-201ENSMUST00000025711 2489 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Usp40Q8BWR4 Gm19684-201ENSMUST00000173128 1611 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Usp40Q8BWR4 Wdr41-203ENSMUST00000160115 2851 ntTSL 5 BASIC20.64■□□□□ 0.89
Usp40Q8BWR4 Hspa1b-201ENSMUST00000172753 2803 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
Usp40Q8BWR4 Hist3h2a-201ENSMUST00000108817 2146 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
Usp40Q8BWR4 Cldn14-204ENSMUST00000169391 1456 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
Usp40Q8BWR4 Gm16759-204ENSMUST00000191455 4272 ntTSL 5 BASIC20.63■□□□□ 0.89
Usp40Q8BWR4 Traf5-201ENSMUST00000085573 1964 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
Usp40Q8BWR4 Fhad1-201ENSMUST00000036701 1366 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Usp40Q8BWR4 Khdc1c-201ENSMUST00000070223 1946 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Usp40Q8BWR4 A830018L16Rik-208ENSMUST00000171690 6158 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
Usp40Q8BWR4 Mtif3-203ENSMUST00000110564 1257 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Usp40Q8BWR4 Mtif3-204ENSMUST00000110566 1134 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Usp40Q8BWR4 Kir3dl1-201ENSMUST00000113104 1031 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Usp40Q8BWR4 Erdr1-204ENSMUST00000179483 688 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Usp40Q8BWR4 Gm27306-201ENSMUST00000183970 107 ntBASIC20.63■□□□□ 0.89
Usp40Q8BWR4 Gm28237-202ENSMUST00000189477 748 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Usp40Q8BWR4 Ighv8-7-201ENSMUST00000194349 297 ntBASIC20.63■□□□□ 0.89
Usp40Q8BWR4 AC158529.1-201ENSMUST00000223618 239 ntBASIC20.63■□□□□ 0.89
Usp40Q8BWR4 Il31-201ENSMUST00000031389 806 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Usp40Q8BWR4 Aga-201ENSMUST00000033920 1181 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
Usp40Q8BWR4 Sh2b3-204ENSMUST00000122426 2777 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
Usp40Q8BWR4 Wdr90-205ENSMUST00000176923 5666 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
Usp40Q8BWR4 Gm17501-201ENSMUST00000181247 1700 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Usp40Q8BWR4 Fam178b-201ENSMUST00000114981 1659 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
Usp40Q8BWR4 4921539H07Rik-202ENSMUST00000200072 1665 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Usp40Q8BWR4 Gm45277-201ENSMUST00000210549 1695 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Usp40Q8BWR4 Usp35-202ENSMUST00000168435 3982 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
Usp40Q8BWR4 Capn1-202ENSMUST00000164843 3048 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
Usp40Q8BWR4 Rab33b-201ENSMUST00000054387 3492 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Usp40Q8BWR4 Rnf14-203ENSMUST00000171461 3351 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Usp40Q8BWR4 Mau2-204ENSMUST00000212308 2887 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Usp40Q8BWR4 Cds2-202ENSMUST00000103181 8396 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Usp40Q8BWR4 Zfp691-201ENSMUST00000052715 2341 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Usp40Q8BWR4 P4ha2-202ENSMUST00000093107 2263 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Usp40Q8BWR4 Chchd4-201ENSMUST00000040835 3472 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Usp40Q8BWR4 Gclc-201ENSMUST00000034905 3423 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Usp40Q8BWR4 Naa35-201ENSMUST00000022038 3793 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Usp40Q8BWR4 G2e3-202ENSMUST00000119211 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Usp40Q8BWR4 Tacstd2-201ENSMUST00000058178 1735 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
Usp40Q8BWR4 Sybu-207ENSMUST00000227305 3124 ntAPPRIS ALT2 BASIC20.62■□□□□ 0.89
Usp40Q8BWR4 Zfp637-202ENSMUST00000112859 421 ntTSL 2 BASIC20.62■□□□□ 0.89
Usp40Q8BWR4 Gm12151-201ENSMUST00000121374 290 ntBASIC20.62■□□□□ 0.89
Usp40Q8BWR4 Gm20650-201ENSMUST00000175690 198 ntTSL 3 BASIC20.62■□□□□ 0.89
Usp40Q8BWR4 Esd-207ENSMUST00000176957 1117 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Usp40Q8BWR4 Gm29501-201ENSMUST00000186133 530 ntTSL 5 BASIC20.62■□□□□ 0.89
Usp40Q8BWR4 Gm28630-201ENSMUST00000187806 498 ntBASIC20.62■□□□□ 0.89
Usp40Q8BWR4 Hrasls5-201ENSMUST00000025929 1063 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Usp40Q8BWR4 Ddc-201ENSMUST00000066237 1922 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
Usp40Q8BWR4 Gps1-202ENSMUST00000116305 1827 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Usp40Q8BWR4 Cyb561a3-201ENSMUST00000168445 1474 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
Usp40Q8BWR4 Tvp23b-201ENSMUST00000014321 1784 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Usp40Q8BWR4 Rab3a-204ENSMUST00000110093 1442 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Usp40Q8BWR4 Ntf3-202ENSMUST00000112244 1399 ntAPPRIS ALT1 TSL 3 BASIC20.61■□□□□ 0.89
Usp40Q8BWR4 4930556H04Rik-201ENSMUST00000222451 1675 ntBASIC20.61■□□□□ 0.89
Usp40Q8BWR4 Dpp7-201ENSMUST00000028332 1682 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Usp40Q8BWR4 Nap1l4-201ENSMUST00000072727 2285 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Usp40Q8BWR4 Zfp281-201ENSMUST00000047734 4933 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Usp40Q8BWR4 Pxn-201ENSMUST00000067268 3706 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
Usp40Q8BWR4 Hoxd12-201ENSMUST00000001878 2534 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Usp40Q8BWR4 Stx7-201ENSMUST00000020174 2502 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Usp40Q8BWR4 Gm26688-201ENSMUST00000181176 1568 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Usp40Q8BWR4 Cyfip2-205ENSMUST00000165599 6659 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Usp40Q8BWR4 Diablo-202ENSMUST00000111586 719 ntTSL 5 BASIC20.61■□□□□ 0.89
Usp40Q8BWR4 Cryba4-202ENSMUST00000112383 754 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Usp40Q8BWR4 Rhox2d-201ENSMUST00000115179 685 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
Usp40Q8BWR4 Gm12264-201ENSMUST00000123949 500 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Usp40Q8BWR4 Zpr1-206ENSMUST00000156440 2984 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Usp40Q8BWR4 Gm26935-201ENSMUST00000182686 519 ntTSL 5 BASIC20.61■□□□□ 0.89
Usp40Q8BWR4 Gm32351-201ENSMUST00000220503 438 ntTSL 5 BASIC20.61■□□□□ 0.89
Usp40Q8BWR4 Gm6566-201ENSMUST00000221468 1171 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Usp40Q8BWR4 Hgfac-201ENSMUST00000030985 2135 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Usp40Q8BWR4 Diablo-201ENSMUST00000031385 681 ntTSL 2 BASIC20.61■□□□□ 0.89
Usp40Q8BWR4 Ifng-201ENSMUST00000068592 1208 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Usp40Q8BWR4 Cndp2-202ENSMUST00000168419 2088 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Retrieved 100 of 76,532 protein–RNA pairs in 46 ms