Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Eif3f-201ENSMUST00000033342 2514 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
RaraP11416 Ptpn6-203ENSMUST00000171549 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
RaraP11416 Emp3-202ENSMUST00000164119 784 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
RaraP11416 Gm10499-201ENSMUST00000174094 934 ntBASIC16.36■□□□□ 0.21
RaraP11416 Syne4-208ENSMUST00000176304 1006 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
RaraP11416 Ucn-202ENSMUST00000201184 499 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
RaraP11416 Gm26646-202ENSMUST00000205705 439 ntTSL 5 BASIC16.36■□□□□ 0.21
RaraP11416 Gm38575-201ENSMUST00000213881 652 ntTSL 2 BASIC16.36■□□□□ 0.21
RaraP11416 AC110091.2-202ENSMUST00000216718 1148 ntTSL 5 BASIC16.36■□□□□ 0.21
RaraP11416 Slc8b1-201ENSMUST00000068326 2898 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
RaraP11416 Add1-203ENSMUST00000114335 4547 ntTSL 5 BASIC16.36■□□□□ 0.21
RaraP11416 Vsig10-202ENSMUST00000111967 4236 ntAPPRIS P2 TSL 5 BASIC16.36■□□□□ 0.21
RaraP11416 Sez6-202ENSMUST00000093995 4239 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
RaraP11416 Prdm4-207ENSMUST00000220032 3962 ntTSL 5 BASIC16.36■□□□□ 0.21
RaraP11416 Sgpl1-202ENSMUST00000122259 4102 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
RaraP11416 4930558J18Rik-201ENSMUST00000181949 2052 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
RaraP11416 Ggn-205ENSMUST00000209019 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
RaraP11416 Tvp23b-201ENSMUST00000014321 1784 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
RaraP11416 Nrxn1-209ENSMUST00000161402 4953 ntTSL 5 BASIC16.36■□□□□ 0.21
RaraP11416 Gm26578-201ENSMUST00000181702 4611 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
RaraP11416 Pid1-207ENSMUST00000177458 2521 ntTSL 2 BASIC16.36■□□□□ 0.21
RaraP11416 Kcnt1-213ENSMUST00000198204 4714 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
RaraP11416 Tomm6os-201ENSMUST00000155812 2944 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
RaraP11416 Gm32369-201ENSMUST00000222630 1467 ntTSL 5 BASIC16.35■□□□□ 0.21
RaraP11416 Dzip1-201ENSMUST00000004055 4079 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
RaraP11416 Ccna2-201ENSMUST00000029270 2965 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
RaraP11416 Lypd1-205ENSMUST00000162899 1511 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
RaraP11416 Clns1a-201ENSMUST00000026506 1504 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
RaraP11416 Rbm26-203ENSMUST00000163499 4212 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
RaraP11416 Sp2-203ENSMUST00000107624 3055 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
RaraP11416 Foxp1-208ENSMUST00000113329 1926 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
RaraP11416 Dcaf13-201ENSMUST00000022909 1551 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
RaraP11416 Nup88-202ENSMUST00000108530 2389 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
RaraP11416 Ythdf3-203ENSMUST00000191774 3196 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
RaraP11416 Mus81-202ENSMUST00000124334 2067 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
RaraP11416 A830012C17Rik-201ENSMUST00000131498 1665 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
RaraP11416 Siglecf-201ENSMUST00000012798 2510 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
RaraP11416 Krtap1-4-201ENSMUST00000100479 593 ntAPPRIS P1 BASIC16.35■□□□□ 0.21
RaraP11416 Blvrb-204ENSMUST00000133750 509 ntTSL 2 BASIC16.35■□□□□ 0.21
RaraP11416 Rasl2-9-201ENSMUST00000147835 1013 ntAPPRIS P1 BASIC16.35■□□□□ 0.21
RaraP11416 Mthfsl-204ENSMUST00000186863 725 ntTSL 2 BASIC16.35■□□□□ 0.21
RaraP11416 Gm13830-205ENSMUST00000201195 1155 ntBASIC16.35■□□□□ 0.21
RaraP11416 Gm18669-201ENSMUST00000216049 778 ntBASIC16.35■□□□□ 0.21
RaraP11416 Carlr-201ENSMUST00000181515 2574 ntBASIC16.35■□□□□ 0.21
RaraP11416 Tlr2-201ENSMUST00000029623 3014 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
RaraP11416 Plekha4-201ENSMUST00000051810 2660 ntAPPRIS P2 TSL 5 BASIC16.35■□□□□ 0.21
RaraP11416 Npas3-204ENSMUST00000223358 3143 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
RaraP11416 Ccdc103-201ENSMUST00000021307 1841 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
RaraP11416 Ercc2-203ENSMUST00000108461 2799 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
RaraP11416 Cct6b-202ENSMUST00000100722 1871 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
RaraP11416 Adarb1-202ENSMUST00000098374 6584 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
RaraP11416 Gm37297-201ENSMUST00000192974 2384 ntBASIC16.35■□□□□ 0.21
RaraP11416 4933434E20Rik-203ENSMUST00000068798 1500 ntTSL 5 BASIC16.35■□□□□ 0.21
RaraP11416 Spdef-202ENSMUST00000114870 2070 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
RaraP11416 Fbxl12-205ENSMUST00000140702 1555 ntBASIC16.34■□□□□ 0.21
RaraP11416 Bend4-201ENSMUST00000169190 7935 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
RaraP11416 Slc39a11-203ENSMUST00000106633 2688 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
RaraP11416 Gm21981-201ENSMUST00000143789 2721 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
RaraP11416 Scara5-202ENSMUST00000069226 3262 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
RaraP11416 Amz2-202ENSMUST00000092500 2816 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
RaraP11416 Vcan-205ENSMUST00000159337 2273 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
RaraP11416 Fkbp14-202ENSMUST00000117375 1830 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
RaraP11416 4930429H19Rik-201ENSMUST00000205260 1818 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
RaraP11416 Nfe2l2-201ENSMUST00000102672 2475 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
RaraP11416 Zfyve27-201ENSMUST00000099443 2573 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
RaraP11416 Sash1-201ENSMUST00000015449 7183 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
RaraP11416 Syt3-201ENSMUST00000118831 2627 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
RaraP11416 Anxa4-201ENSMUST00000001187 2002 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
RaraP11416 Kctd14-204ENSMUST00000205577 2310 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
RaraP11416 Pex5-201ENSMUST00000035861 3139 ntAPPRIS P4 TSL 1 (best) BASIC16.34■□□□□ 0.21
RaraP11416 Arhgap44-203ENSMUST00000093002 3982 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
RaraP11416 Slc46a3-201ENSMUST00000031655 2434 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
RaraP11416 Ybx1-201ENSMUST00000079644 1628 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
RaraP11416 Slc44a5-201ENSMUST00000089948 4098 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
RaraP11416 Pak2-201ENSMUST00000023467 5741 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
RaraP11416 Nyap1-204ENSMUST00000212152 2499 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
RaraP11416 Lrp11-201ENSMUST00000019931 3386 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
RaraP11416 Psmd5-201ENSMUST00000028225 4397 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
RaraP11416 Tmem81-202ENSMUST00000188789 1751 ntAPPRIS P1 BASIC16.33■□□□□ 0.21
RaraP11416 Lmf1-202ENSMUST00000116641 1858 ntAPPRIS P2 TSL 5 BASIC16.33■□□□□ 0.21
RaraP11416 Adrb3-203ENSMUST00000121838 1864 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.21
RaraP11416 Lmf1-201ENSMUST00000063344 1861 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.21
RaraP11416 Klhl34-201ENSMUST00000087157 1935 ntAPPRIS P1 BASIC16.33■□□□□ 0.21
RaraP11416 Eva1c-203ENSMUST00000099548 1948 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
RaraP11416 Reep1-201ENSMUST00000121469 3924 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
RaraP11416 Cds1-201ENSMUST00000031273 3924 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
RaraP11416 Dusp15-203ENSMUST00000123121 2993 ntAPPRIS P1 TSL 3 BASIC16.33■□□□□ 0.21
RaraP11416 Casc4-201ENSMUST00000078752 4215 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
RaraP11416 Orai3-203ENSMUST00000121504 2141 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
RaraP11416 Mcidas-201ENSMUST00000092089 2377 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
RaraP11416 Ubqln1-201ENSMUST00000058735 3686 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
RaraP11416 Gatad2a-203ENSMUST00000177851 5007 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
RaraP11416 Gm13403-202ENSMUST00000134271 674 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
RaraP11416 Tulp3-205ENSMUST00000157005 1053 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
RaraP11416 Mocs1-202ENSMUST00000165390 729 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
RaraP11416 Pdcd6-201ENSMUST00000022060 1131 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
RaraP11416 Wfdc6b-201ENSMUST00000094346 984 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
RaraP11416 Daxx-201ENSMUST00000079421 2580 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
RaraP11416 Pcdha7-201ENSMUST00000192631 5337 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
RaraP11416 Gpc6-201ENSMUST00000078849 1668 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
Retrieved 100 of 76,532 protein–RNA pairs in 29.3 ms