Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Bpifa3-201ENSMUST00000028984 1107 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
Chmp6P0C0A3 Olfr30-201ENSMUST00000055204 1066 ntAPPRIS P1 BASIC16.47■□□□□ 0.23
Chmp6P0C0A3 Ly6k-201ENSMUST00000060301 791 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Chmp6P0C0A3 Egfl8-202ENSMUST00000097345 1064 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
Chmp6P0C0A3 Itgav-201ENSMUST00000028499 7054 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
Chmp6P0C0A3 Nap1l1-206ENSMUST00000219143 1365 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Chmp6P0C0A3 Cnot10-206ENSMUST00000216785 1723 ntTSL 5 BASIC16.47■□□□□ 0.23
Chmp6P0C0A3 Bclaf3-201ENSMUST00000057180 2513 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
Chmp6P0C0A3 Dnmt3b-201ENSMUST00000056495 4318 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
Chmp6P0C0A3 Pdzd4-202ENSMUST00000114438 3625 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
Chmp6P0C0A3 Tm9sf1-203ENSMUST00000121791 2148 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
Chmp6P0C0A3 Taz-202ENSMUST00000114180 1786 ntAPPRIS ALT1 TSL 5 BASIC16.46■□□□□ 0.23
Chmp6P0C0A3 Trim3-201ENSMUST00000057525 3016 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Chmp6P0C0A3 Apmap-201ENSMUST00000046399 2235 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Chmp6P0C0A3 Coro1c-201ENSMUST00000004646 3491 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Chmp6P0C0A3 Sorbs1-208ENSMUST00000224247 2688 ntAPPRIS ALT2 BASIC16.46■□□□□ 0.23
Chmp6P0C0A3 Gabra4-201ENSMUST00000031121 4108 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
Chmp6P0C0A3 Cr1l-208ENSMUST00000194111 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
Chmp6P0C0A3 Car7-201ENSMUST00000056051 1538 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Chmp6P0C0A3 Runx2-202ENSMUST00000113571 5898 ntAPPRIS P3 TSL 5 BASIC16.46■□□□□ 0.23
Chmp6P0C0A3 Dnajc2-202ENSMUST00000115192 1132 ntTSL 2 BASIC16.46■□□□□ 0.23
Chmp6P0C0A3 Ccl27a-217ENSMUST00000155240 343 ntTSL 2 BASIC16.46■□□□□ 0.23
Chmp6P0C0A3 Sssca1-203ENSMUST00000159693 705 ntTSL 3 BASIC16.46■□□□□ 0.23
Chmp6P0C0A3 Tbc1d7-202ENSMUST00000179852 1246 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Chmp6P0C0A3 Pih1d1-206ENSMUST00000210139 1077 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Chmp6P0C0A3 Cela3a-201ENSMUST00000024200 958 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
Chmp6P0C0A3 Thoc7-201ENSMUST00000065865 937 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Chmp6P0C0A3 Tead2-203ENSMUST00000107801 3396 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
Chmp6P0C0A3 Trip10-202ENSMUST00000224152 1812 ntAPPRIS ALT2 BASIC16.46■□□□□ 0.23
Chmp6P0C0A3 Tmem2-201ENSMUST00000025663 6585 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Chmp6P0C0A3 Gopc-201ENSMUST00000020008 4216 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
Chmp6P0C0A3 Mrap2-203ENSMUST00000179313 2039 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
Chmp6P0C0A3 Fam103a1-201ENSMUST00000042166 1452 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Chmp6P0C0A3 Lck-202ENSMUST00000102596 2111 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Chmp6P0C0A3 Gnb2-212ENSMUST00000150063 1569 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Chmp6P0C0A3 Hspa1a-201ENSMUST00000087328 2967 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
Chmp6P0C0A3 Ndufv1-201ENSMUST00000042497 1661 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
Chmp6P0C0A3 Eif4g1-201ENSMUST00000044783 5444 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.22
Chmp6P0C0A3 Zyx-207ENSMUST00000203652 2605 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.22
Chmp6P0C0A3 Suv39h2-201ENSMUST00000027956 4327 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
Chmp6P0C0A3 Rbfox3-203ENSMUST00000103023 2809 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.22
Chmp6P0C0A3 Cstf2-203ENSMUST00000113287 3661 ntTSL 1 (best) BASIC16.46■□□□□ 0.22
Chmp6P0C0A3 Gmppa-201ENSMUST00000037796 1539 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Chmp6P0C0A3 Arhgef40-204ENSMUST00000182061 4756 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Chmp6P0C0A3 Dmkn-203ENSMUST00000085688 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Chmp6P0C0A3 Agbl5-213ENSMUST00000201917 3579 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Chmp6P0C0A3 Supt5-208ENSMUST00000209141 3755 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Chmp6P0C0A3 Usp33-202ENSMUST00000117492 3886 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Chmp6P0C0A3 Comtd1-202ENSMUST00000124549 2314 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Chmp6P0C0A3 Gm12522-201ENSMUST00000142833 2439 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Chmp6P0C0A3 Gm37736-201ENSMUST00000193564 2802 ntBASIC16.45■□□□□ 0.22
Chmp6P0C0A3 Wdr61-203ENSMUST00000121204 1290 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Chmp6P0C0A3 Tcp1-207ENSMUST00000143961 614 ntTSL 2 BASIC16.45■□□□□ 0.22
Chmp6P0C0A3 Gm26695-201ENSMUST00000180920 1251 ntTSL 5 BASIC16.45■□□□□ 0.22
Chmp6P0C0A3 Calcb-203ENSMUST00000182816 706 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
Chmp6P0C0A3 Olfr572-203ENSMUST00000215782 1233 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
Chmp6P0C0A3 Alg3-201ENSMUST00000045918 1451 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Chmp6P0C0A3 Rab17-204ENSMUST00000131428 1557 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Chmp6P0C0A3 Myod1-201ENSMUST00000072514 1861 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Chmp6P0C0A3 Cryzl1-201ENSMUST00000073466 1965 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Chmp6P0C0A3 Ptpa-203ENSMUST00000113603 2169 ntTSL 5 BASIC16.45■□□□□ 0.22
Chmp6P0C0A3 Steap2-202ENSMUST00000115424 3285 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Chmp6P0C0A3 Tpgs2-202ENSMUST00000148255 3424 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Chmp6P0C0A3 Aaed1-207ENSMUST00000222570 3011 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Chmp6P0C0A3 Dsn1-202ENSMUST00000103130 2636 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Chmp6P0C0A3 Penk-201ENSMUST00000070375 1449 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Chmp6P0C0A3 Cspg5-201ENSMUST00000035058 3870 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Chmp6P0C0A3 Sbno2-204ENSMUST00000217972 2462 ntTSL 2 BASIC16.44■□□□□ 0.22
Chmp6P0C0A3 Dlat-201ENSMUST00000034567 4035 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Chmp6P0C0A3 Aptx-202ENSMUST00000068125 5383 ntAPPRIS P4 TSL 1 (best) BASIC16.44■□□□□ 0.22
Chmp6P0C0A3 Med20-201ENSMUST00000024778 2054 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Chmp6P0C0A3 Camk2b-205ENSMUST00000093355 1973 ntTSL 5 BASIC16.44■□□□□ 0.22
Chmp6P0C0A3 Arhgef40-220ENSMUST00000182909 5108 ntAPPRIS P4 TSL 5 BASIC16.44■□□□□ 0.22
Chmp6P0C0A3 Rfx5-207ENSMUST00000137088 4333 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
Chmp6P0C0A3 Map3k14-201ENSMUST00000021324 4246 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Chmp6P0C0A3 Yipf5-201ENSMUST00000025364 2329 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Chmp6P0C0A3 Ube2j2-203ENSMUST00000105581 1391 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Chmp6P0C0A3 Lman1-202ENSMUST00000120461 2208 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Chmp6P0C0A3 Ggn-204ENSMUST00000208330 2205 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
Chmp6P0C0A3 Gm43352-201ENSMUST00000196419 3065 ntBASIC16.44■□□□□ 0.22
Chmp6P0C0A3 Mrpl58-202ENSMUST00000103036 749 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Chmp6P0C0A3 Kctd10-201ENSMUST00000001125 1026 ntAPPRIS ALT1 TSL 5 BASIC16.44■□□□□ 0.22
Chmp6P0C0A3 4930481B07Rik-201ENSMUST00000128160 1089 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Chmp6P0C0A3 Gm11750-201ENSMUST00000146016 583 ntTSL 5 BASIC16.44■□□□□ 0.22
Chmp6P0C0A3 Gm15598-201ENSMUST00000156965 763 ntTSL 5 BASIC16.44■□□□□ 0.22
Chmp6P0C0A3 Gm27628-201ENSMUST00000184911 107 ntBASIC16.44■□□□□ 0.22
Chmp6P0C0A3 Gm18206-201ENSMUST00000207027 926 ntBASIC16.44■□□□□ 0.22
Chmp6P0C0A3 Gm45167-201ENSMUST00000208007 322 ntBASIC16.44■□□□□ 0.22
Chmp6P0C0A3 Gm16845-202ENSMUST00000216270 567 ntTSL 2 BASIC16.44■□□□□ 0.22
Chmp6P0C0A3 AC160980.1-201ENSMUST00000224136 970 ntBASIC16.44■□□□□ 0.22
Chmp6P0C0A3 Zfp706-204ENSMUST00000226671 447 ntAPPRIS P1 BASIC16.44■□□□□ 0.22
Chmp6P0C0A3 AC159093.1-201ENSMUST00000227779 380 ntBASIC16.44■□□□□ 0.22
Chmp6P0C0A3 Gins1-201ENSMUST00000028948 1087 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Chmp6P0C0A3 Hist1h3c-201ENSMUST00000091752 630 ntAPPRIS P1 BASIC16.44■□□□□ 0.22
Chmp6P0C0A3 Cfap97-202ENSMUST00000110376 2043 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
Chmp6P0C0A3 Snx17-201ENSMUST00000031029 2018 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Chmp6P0C0A3 Eif2b1-201ENSMUST00000031334 2013 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Chmp6P0C0A3 Nrxn1-204ENSMUST00000159778 3414 ntTSL 5 BASIC16.44■□□□□ 0.22
Chmp6P0C0A3 B4galt2-203ENSMUST00000106421 1801 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Chmp6P0C0A3 6430573F11Rik-205ENSMUST00000171777 1825 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Retrieved 100 of 76,532 protein–RNA pairs in 30.5 ms