Protein–RNA interactions for Protein: O88609

Lmx1b, LIM homeobox transcription factor 1-beta, mousemouse

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lmx1bO88609 Paxx-201ENSMUST00000114261 981 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Lmx1bO88609 Gm11453-201ENSMUST00000117318 1007 ntBASIC13.71□□□□□ -0.21
Lmx1bO88609 Gssos1-201ENSMUST00000142509 716 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Lmx1bO88609 Ankrd13d-204ENSMUST00000167215 639 ntTSL 3 BASIC13.71□□□□□ -0.21
Lmx1bO88609 1500015A07Rik-203ENSMUST00000184678 890 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Lmx1bO88609 Hapln3-202ENSMUST00000205782 930 ntTSL 5 BASIC13.71□□□□□ -0.21
Lmx1bO88609 Stum-205ENSMUST00000211561 1063 ntAPPRIS ALT1 TSL 5 BASIC13.71□□□□□ -0.21
Lmx1bO88609 AC154572.2-201ENSMUST00000225105 997 ntBASIC13.71□□□□□ -0.21
Lmx1bO88609 H2-T23-201ENSMUST00000102678 1472 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Lmx1bO88609 Strn4-201ENSMUST00000019220 3535 ntAPPRIS P4 TSL 1 (best) BASIC13.71□□□□□ -0.21
Lmx1bO88609 Sybu-209ENSMUST00000228639 4113 ntBASIC13.71□□□□□ -0.21
Lmx1bO88609 Steap2-205ENSMUST00000115427 3470 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
Lmx1bO88609 Rabepk-203ENSMUST00000118108 1431 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.22
Lmx1bO88609 Gm14221-202ENSMUST00000209603 1437 ntTSL 5 BASIC13.71□□□□□ -0.22
Lmx1bO88609 Slc24a4-202ENSMUST00000159329 4465 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.22
Lmx1bO88609 Nrg2-203ENSMUST00000115713 3001 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.22
Lmx1bO88609 Supt5-208ENSMUST00000209141 3755 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Lmx1bO88609 P3h1-204ENSMUST00000121111 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.22
Lmx1bO88609 P3h1-203ENSMUST00000102662 2977 ntAPPRIS P3 TSL 5 BASIC13.71□□□□□ -0.22
Lmx1bO88609 Fam126b-201ENSMUST00000038372 2385 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Lmx1bO88609 Ppp4r3a-202ENSMUST00000163095 4083 ntTSL 5 BASIC13.7□□□□□ -0.22
Lmx1bO88609 Suco-201ENSMUST00000048377 6327 ntAPPRIS P2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Lmx1bO88609 Lmna-202ENSMUST00000036252 1536 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Lmx1bO88609 Cux2-201ENSMUST00000086317 5113 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Lmx1bO88609 Pcdhgc4-203ENSMUST00000195239 2272 ntTSL 3 BASIC13.7□□□□□ -0.22
Lmx1bO88609 Trim65-201ENSMUST00000067632 3048 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Lmx1bO88609 Ace-201ENSMUST00000001963 4906 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Lmx1bO88609 Asphd1-202ENSMUST00000106339 518 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
Lmx1bO88609 Dusp3-205ENSMUST00000143177 391 ntTSL 3 BASIC13.7□□□□□ -0.22
Lmx1bO88609 Gm26308-201ENSMUST00000157768 69 ntBASIC13.7□□□□□ -0.22
Lmx1bO88609 Msrb2-201ENSMUST00000023856 1196 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Lmx1bO88609 Mt3-201ENSMUST00000034211 536 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Lmx1bO88609 Ubp1-206ENSMUST00000216558 1623 ntAPPRIS P4 TSL 1 (best) BASIC13.7□□□□□ -0.22
Lmx1bO88609 Sfn-201ENSMUST00000057311 1613 ntAPPRIS P1 BASIC13.7□□□□□ -0.22
Lmx1bO88609 Mrc2-202ENSMUST00000100335 5795 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Lmx1bO88609 Vwa8-202ENSMUST00000227255 3406 ntAPPRIS ALT2 BASIC13.7□□□□□ -0.22
Lmx1bO88609 Dennd1a-201ENSMUST00000102787 4342 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Lmx1bO88609 Sgpp1-202ENSMUST00000220285 3200 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Lmx1bO88609 Dhx16-201ENSMUST00000025292 3351 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Lmx1bO88609 Slc4a1ap-206ENSMUST00000201858 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Lmx1bO88609 Ccdc13-202ENSMUST00000135986 2640 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
Lmx1bO88609 Cuedc2-202ENSMUST00000167861 1941 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
Lmx1bO88609 Ttll5-201ENSMUST00000040179 5081 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
Lmx1bO88609 B230219D22Rik-201ENSMUST00000057844 4652 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Lmx1bO88609 Tpm2-202ENSMUST00000107913 2098 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
Lmx1bO88609 Cnot10-206ENSMUST00000216785 1723 ntTSL 5 BASIC13.7□□□□□ -0.22
Lmx1bO88609 Fam103a1-202ENSMUST00000118190 1391 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Lmx1bO88609 Galnt6os-201ENSMUST00000160960 1389 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Lmx1bO88609 Lman1-202ENSMUST00000120461 2208 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Lmx1bO88609 Akirin1-201ENSMUST00000102636 3052 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Lmx1bO88609 Galt-202ENSMUST00000108038 1859 ntAPPRIS ALT2 TSL 2 BASIC13.7□□□□□ -0.22
Lmx1bO88609 Papd5-202ENSMUST00000118952 4597 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Lmx1bO88609 4933426K07Rik-201ENSMUST00000143009 1548 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Lmx1bO88609 Samm50-201ENSMUST00000023071 1673 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Lmx1bO88609 Sfmbt1-201ENSMUST00000054230 7837 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
Lmx1bO88609 B4galt2-203ENSMUST00000106421 1801 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Lmx1bO88609 AC119177.1-201ENSMUST00000227647 1332 ntBASIC13.69□□□□□ -0.22
Lmx1bO88609 Fubp3-201ENSMUST00000055244 3648 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Lmx1bO88609 Gm8281-202ENSMUST00000163719 1954 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
Lmx1bO88609 Sigirr-201ENSMUST00000097958 1990 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Lmx1bO88609 St7l-211ENSMUST00000200132 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Lmx1bO88609 Cobl-203ENSMUST00000109651 5541 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Lmx1bO88609 6030419C18Rik-202ENSMUST00000216294 1601 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Lmx1bO88609 Ccdc68-201ENSMUST00000043929 1618 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Lmx1bO88609 Pitx2-203ENSMUST00000106382 1757 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Lmx1bO88609 Kif26a-201ENSMUST00000128402 6918 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Lmx1bO88609 9130019P16Rik-202ENSMUST00000145111 4486 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Lmx1bO88609 0610010K14Rik-204ENSMUST00000102569 778 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
Lmx1bO88609 Usf2-202ENSMUST00000108119 849 ntTSL 5 BASIC13.69□□□□□ -0.22
Lmx1bO88609 Gm28308-201ENSMUST00000128102 752 ntAPPRIS P1 TSL 3 BASIC13.69□□□□□ -0.22
Lmx1bO88609 Tex30-206ENSMUST00000133677 935 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Lmx1bO88609 Fhad1os2-201ENSMUST00000152351 945 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Lmx1bO88609 Ndufa1-201ENSMUST00000016571 419 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Lmx1bO88609 Gm8318-201ENSMUST00000182954 872 ntBASIC13.69□□□□□ -0.22
Lmx1bO88609 Gm45747-201ENSMUST00000212203 999 ntBASIC13.69□□□□□ -0.22
Lmx1bO88609 Tspyl-ps-201ENSMUST00000220692 1117 ntBASIC13.69□□□□□ -0.22
Lmx1bO88609 AC160980.1-201ENSMUST00000224136 970 ntBASIC13.69□□□□□ -0.22
Lmx1bO88609 1700080E11Rik-201ENSMUST00000035180 883 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Lmx1bO88609 BC037039-201ENSMUST00000192003 2205 ntBASIC13.69□□□□□ -0.22
Lmx1bO88609 Casp8ap2-201ENSMUST00000029950 6799 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Lmx1bO88609 Ttc9c-201ENSMUST00000088092 1585 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Lmx1bO88609 C77080-201ENSMUST00000052602 5187 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
Lmx1bO88609 Selplg-201ENSMUST00000100874 1855 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Lmx1bO88609 Mex3c-201ENSMUST00000091852 3738 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Lmx1bO88609 Impdh1-205ENSMUST00000160878 2314 ntTSL 5 BASIC13.69□□□□□ -0.22
Lmx1bO88609 Shank3-201ENSMUST00000039074 7131 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Lmx1bO88609 Rnf139-201ENSMUST00000036904 4348 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Lmx1bO88609 Chst11-201ENSMUST00000040110 5527 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Lmx1bO88609 Asl-205ENSMUST00000161094 1824 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Lmx1bO88609 Gna15-201ENSMUST00000043709 1962 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Lmx1bO88609 Slc43a3-201ENSMUST00000090726 2583 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Lmx1bO88609 Fam124a-201ENSMUST00000039064 3558 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
Lmx1bO88609 Crem-203ENSMUST00000082141 2820 ntTSL 5 BASIC13.68□□□□□ -0.22
Lmx1bO88609 Fam241b-204ENSMUST00000125704 1769 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Lmx1bO88609 Ager-209ENSMUST00000174496 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Lmx1bO88609 Ssu2-201ENSMUST00000060847 1321 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Lmx1bO88609 Zbtb46-205ENSMUST00000180222 2014 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Lmx1bO88609 Acd-201ENSMUST00000042608 3154 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Lmx1bO88609 Myod1-201ENSMUST00000072514 1861 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Lmx1bO88609 Tango6-202ENSMUST00000211979 2722 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Retrieved 100 of 76,532 protein–RNA pairs in 32.8 ms