Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Gm37230-201ENSMUST00000194491 818 ntBASIC20.36■□□□□ 0.85
Scn4aQ9ER60 Gm43133-201ENSMUST00000197472 463 ntBASIC20.36■□□□□ 0.85
Scn4aQ9ER60 Lemd3-201ENSMUST00000119093 4370 ntAPPRIS ALT2 TSL 2 BASIC20.36■□□□□ 0.85
Scn4aQ9ER60 Ivns1abp-203ENSMUST00000111887 2783 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Scn4aQ9ER60 Jakmip1-212ENSMUST00000174629 1941 ntTSL 5 BASIC20.36■□□□□ 0.85
Scn4aQ9ER60 Ehmt2-203ENSMUST00000097342 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
Scn4aQ9ER60 Ssx2ip-204ENSMUST00000106153 3446 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
Scn4aQ9ER60 Cct7-201ENSMUST00000032078 2441 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Scn4aQ9ER60 Arl5c-202ENSMUST00000107563 823 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Scn4aQ9ER60 Wfdc9-202ENSMUST00000109335 547 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
Scn4aQ9ER60 Far2os1-201ENSMUST00000162391 555 ntTSL 2 BASIC20.35■□□□□ 0.85
Scn4aQ9ER60 Ins2-209ENSMUST00000210288 918 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
Scn4aQ9ER60 Ormdl2-204ENSMUST00000219524 724 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
Scn4aQ9ER60 Sbk2-202ENSMUST00000182214 2236 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
Scn4aQ9ER60 Wdr53-201ENSMUST00000023474 1394 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Scn4aQ9ER60 Gpr20-201ENSMUST00000064166 2144 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Scn4aQ9ER60 Gpr12-203ENSMUST00000197431 1455 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Scn4aQ9ER60 Gm13342-201ENSMUST00000121055 207 ntBASIC20.34■□□□□ 0.85
Scn4aQ9ER60 Cracr2a-201ENSMUST00000071563 1094 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Scn4aQ9ER60 Mybphl-201ENSMUST00000090563 1276 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Scn4aQ9ER60 Csk-201ENSMUST00000034863 2749 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Scn4aQ9ER60 Jakmip1-202ENSMUST00000121010 2496 ntTSL 5 BASIC20.34■□□□□ 0.85
Scn4aQ9ER60 Acot1-201ENSMUST00000168120 2272 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Scn4aQ9ER60 Mageb10-ps-201ENSMUST00000119697 1407 ntBASIC20.34■□□□□ 0.85
Scn4aQ9ER60 Hgsnat-201ENSMUST00000037609 2694 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Scn4aQ9ER60 Neurl4-202ENSMUST00000108617 4892 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
Scn4aQ9ER60 Neurl4-211ENSMUST00000177138 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
Scn4aQ9ER60 Cog2-201ENSMUST00000034460 2825 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Scn4aQ9ER60 Mir877-201ENSMUST00000104738 85 ntBASIC20.34■□□□□ 0.85
Scn4aQ9ER60 Pdpn-202ENSMUST00000119654 762 ntAPPRIS ALT2 TSL 3 BASIC20.34■□□□□ 0.85
Scn4aQ9ER60 Gm16124-201ENSMUST00000146938 516 ntTSL 2 BASIC20.34■□□□□ 0.85
Scn4aQ9ER60 Naxd-205ENSMUST00000178721 1108 ntTSL 5 BASIC20.34■□□□□ 0.85
Scn4aQ9ER60 2010106C02Rik-201ENSMUST00000191222 660 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Scn4aQ9ER60 Pomc-202ENSMUST00000218089 977 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Scn4aQ9ER60 Csrp3-201ENSMUST00000032658 877 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Scn4aQ9ER60 Gm10012-201ENSMUST00000078252 192 ntBASIC20.34■□□□□ 0.85
Scn4aQ9ER60 Emd-202ENSMUST00000088313 1338 ntTSL 2 BASIC20.34■□□□□ 0.85
Scn4aQ9ER60 Pdhx-202ENSMUST00000111183 2078 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
Scn4aQ9ER60 Gm44729-201ENSMUST00000206759 2052 ntBASIC20.33■□□□□ 0.85
Scn4aQ9ER60 Adgrb1-201ENSMUST00000042035 6228 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Scn4aQ9ER60 Cyp2ab1-205ENSMUST00000182741 1497 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.85
Scn4aQ9ER60 Phgdh-201ENSMUST00000065793 1893 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Scn4aQ9ER60 Opn4-202ENSMUST00000168444 2075 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
Scn4aQ9ER60 Gm11793-201ENSMUST00000120433 981 ntBASIC20.33■□□□□ 0.85
Scn4aQ9ER60 Gm10863-204ENSMUST00000147620 776 ntTSL 3 BASIC20.33■□□□□ 0.85
Scn4aQ9ER60 Rps4l-202ENSMUST00000204242 789 ntBASIC20.33■□□□□ 0.85
Scn4aQ9ER60 Gm11978-202ENSMUST00000127510 1303 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
Scn4aQ9ER60 4930528D03Rik-203ENSMUST00000225577 1348 ntBASIC20.33■□□□□ 0.84
Scn4aQ9ER60 Men1-206ENSMUST00000113502 2652 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
Scn4aQ9ER60 Krt84-201ENSMUST00000023720 2570 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Scn4aQ9ER60 Slc39a11-202ENSMUST00000071539 2664 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.84
Scn4aQ9ER60 Aph1a-202ENSMUST00000056710 1601 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Scn4aQ9ER60 Nrxn2-203ENSMUST00000113459 3285 ntTSL 2 BASIC20.33■□□□□ 0.84
Scn4aQ9ER60 Scly-201ENSMUST00000027532 2202 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Scn4aQ9ER60 Cidec-201ENSMUST00000032416 1703 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
Scn4aQ9ER60 Fgfrl1-201ENSMUST00000013633 2329 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Scn4aQ9ER60 Mcrs1-202ENSMUST00000163506 1795 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Scn4aQ9ER60 Hist1h4b-201ENSMUST00000102965 397 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
Scn4aQ9ER60 Gm12216-202ENSMUST00000120776 826 ntAPPRIS ALT2 TSL 2 BASIC20.32■□□□□ 0.84
Scn4aQ9ER60 Cdk3-ps-202ENSMUST00000174177 915 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
Scn4aQ9ER60 Gm2383-201ENSMUST00000181461 807 ntBASIC20.32■□□□□ 0.84
Scn4aQ9ER60 AC153872.1-201ENSMUST00000199539 128 ntBASIC20.32■□□□□ 0.84
Scn4aQ9ER60 Wfdc1-202ENSMUST00000212901 921 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
Scn4aQ9ER60 Gm29787-201ENSMUST00000222129 849 ntBASIC20.32■□□□□ 0.84
Scn4aQ9ER60 Ddit3-201ENSMUST00000026475 890 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Scn4aQ9ER60 Enah-203ENSMUST00000111025 3385 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
Scn4aQ9ER60 Suz12-201ENSMUST00000017692 4373 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
Scn4aQ9ER60 Sept4-201ENSMUST00000018544 1726 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
Scn4aQ9ER60 Spata2l-202ENSMUST00000166768 2707 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Scn4aQ9ER60 Adrb3-203ENSMUST00000121838 1864 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
Scn4aQ9ER60 Lhfpl3-202ENSMUST00000197992 3115 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Scn4aQ9ER60 CT573034.1-201ENSMUST00000222983 313 ntBASIC20.32■□□□□ 0.84
Scn4aQ9ER60 Rpl10l-201ENSMUST00000081908 1023 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
Scn4aQ9ER60 Acp5-203ENSMUST00000165735 1376 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Scn4aQ9ER60 Mpp3-201ENSMUST00000062801 2848 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Scn4aQ9ER60 Ptcd2-201ENSMUST00000022153 1704 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Scn4aQ9ER60 Plekhb1-206ENSMUST00000107047 1926 ntAPPRIS ALT1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Scn4aQ9ER60 Ifrd2-201ENSMUST00000010192 2056 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Scn4aQ9ER60 Sectm1a-204ENSMUST00000106120 1020 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
Scn4aQ9ER60 Stra8-202ENSMUST00000114997 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
Scn4aQ9ER60 Gm16087-201ENSMUST00000124395 964 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Scn4aQ9ER60 Yars2-204ENSMUST00000159962 2805 ntTSL 2 BASIC20.31■□□□□ 0.84
Scn4aQ9ER60 Ggnbp2-201ENSMUST00000018547 2478 ntTSL 5 BASIC20.31■□□□□ 0.84
Scn4aQ9ER60 Gm28265-201ENSMUST00000188201 2319 ntBASIC20.31■□□□□ 0.84
Scn4aQ9ER60 Nsd1-205ENSMUST00000224693 852 ntBASIC20.31■□□□□ 0.84
Scn4aQ9ER60 AC139350.3-201ENSMUST00000226151 420 ntBASIC20.31■□□□□ 0.84
Scn4aQ9ER60 AC140406.1-201ENSMUST00000226481 465 ntBASIC20.31■□□□□ 0.84
Scn4aQ9ER60 Rsph1-201ENSMUST00000024832 1164 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Scn4aQ9ER60 Fgf15-201ENSMUST00000033389 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Scn4aQ9ER60 Tubb3-201ENSMUST00000071134 1868 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Scn4aQ9ER60 Kat2b-201ENSMUST00000000724 4653 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Scn4aQ9ER60 Sec1-201ENSMUST00000040636 2470 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Scn4aQ9ER60 Cyb5d2-201ENSMUST00000079681 2393 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Scn4aQ9ER60 H2-DMb2-201ENSMUST00000041982 1347 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Scn4aQ9ER60 Gm12416-201ENSMUST00000120911 1008 ntBASIC20.3■□□□□ 0.84
Scn4aQ9ER60 Gm12749-201ENSMUST00000122138 1159 ntBASIC20.3■□□□□ 0.84
Scn4aQ9ER60 Spdye4b-202ENSMUST00000159781 1128 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Scn4aQ9ER60 Gm29649-201ENSMUST00000185649 419 ntBASIC20.3■□□□□ 0.84
Scn4aQ9ER60 1600017P15Rik-202ENSMUST00000193960 890 ntBASIC20.3■□□□□ 0.84
Scn4aQ9ER60 Gm11427-203ENSMUST00000215482 1203 ntTSL 5 BASIC20.3■□□□□ 0.84
Retrieved 100 of 76,532 protein–RNA pairs in 34.2 ms