Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Tssc4-208ENSMUST00000208779 647 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
Vps28Q9D1C8 AC174742.1-201ENSMUST00000218272 304 ntBASIC15.52■□□□□ 0.08
Vps28Q9D1C8 2010107E04Rik-203ENSMUST00000222874 612 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.08
Vps28Q9D1C8 Usp32-202ENSMUST00000108075 7053 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.07
Vps28Q9D1C8 Bclaf3-201ENSMUST00000057180 2513 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.07
Vps28Q9D1C8 Asl-205ENSMUST00000161094 1824 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Vps28Q9D1C8 P2rx3-201ENSMUST00000028465 1812 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.07
Vps28Q9D1C8 Abl1-201ENSMUST00000028190 5794 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.07
Vps28Q9D1C8 Naa15-201ENSMUST00000029303 6090 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Vps28Q9D1C8 Rabepk-203ENSMUST00000118108 1431 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
Vps28Q9D1C8 Cxcl10-202ENSMUST00000118006 1353 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Vps28Q9D1C8 Crem-234ENSMUST00000154470 1996 ntTSL 5 BASIC15.51■□□□□ 0.07
Vps28Q9D1C8 Zkscan3-201ENSMUST00000070785 2561 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Vps28Q9D1C8 Pitpna-203ENSMUST00000143219 3761 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
Vps28Q9D1C8 Adipor1-201ENSMUST00000027727 3123 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Vps28Q9D1C8 Aire-213ENSMUST00000148469 1618 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Vps28Q9D1C8 Otud4-202ENSMUST00000173078 7354 ntAPPRIS P4 TSL 1 (best) BASIC15.51■□□□□ 0.07
Vps28Q9D1C8 Ablim2-202ENSMUST00000101280 3042 ntTSL 5 BASIC15.51■□□□□ 0.07
Vps28Q9D1C8 Cyb5rl-204ENSMUST00000106760 840 ntTSL 3 BASIC15.51■□□□□ 0.07
Vps28Q9D1C8 Epo-202ENSMUST00000111038 855 ntAPPRIS P3 TSL 5 BASIC15.51■□□□□ 0.07
Vps28Q9D1C8 Nptn-211ENSMUST00000177064 582 ntTSL 5 BASIC15.51■□□□□ 0.07
Vps28Q9D1C8 Plch2-212ENSMUST00000186598 2119 ntTSL 5 BASIC15.51■□□□□ 0.07
Vps28Q9D1C8 Gm2213-201ENSMUST00000197485 688 ntBASIC15.51■□□□□ 0.07
Vps28Q9D1C8 Gm31545-201ENSMUST00000209358 1219 ntTSL 5 BASIC15.51■□□□□ 0.07
Vps28Q9D1C8 AC155714.1-201ENSMUST00000214033 956 ntTSL 5 BASIC15.51■□□□□ 0.07
Vps28Q9D1C8 Gm7229-201ENSMUST00000214719 1007 ntBASIC15.51■□□□□ 0.07
Vps28Q9D1C8 Gm18246-201ENSMUST00000221023 728 ntBASIC15.51■□□□□ 0.07
Vps28Q9D1C8 Mzb1-201ENSMUST00000025211 905 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Vps28Q9D1C8 Tspan18-201ENSMUST00000028646 1203 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Vps28Q9D1C8 Anapc15-202ENSMUST00000035395 836 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Vps28Q9D1C8 Fnip2-201ENSMUST00000076136 3775 ntAPPRIS P2 TSL 5 BASIC15.51■□□□□ 0.07
Vps28Q9D1C8 Ctnna2-205ENSMUST00000161846 4018 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Vps28Q9D1C8 Dact1-201ENSMUST00000061273 3650 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Vps28Q9D1C8 Mllt1-201ENSMUST00000025053 3608 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Vps28Q9D1C8 Kif12-201ENSMUST00000030042 2250 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
Vps28Q9D1C8 Hs3st3b1-201ENSMUST00000094103 4911 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Vps28Q9D1C8 Cilp2-201ENSMUST00000057831 4314 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
Vps28Q9D1C8 Klf15-204ENSMUST00000203607 2240 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Vps28Q9D1C8 Cdk2-201ENSMUST00000026415 2240 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Vps28Q9D1C8 Gyg-203ENSMUST00000178328 1698 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
Vps28Q9D1C8 Zbtb14-203ENSMUST00000112676 3909 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Vps28Q9D1C8 Mapk9-201ENSMUST00000020634 4675 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
Vps28Q9D1C8 Rbm26-202ENSMUST00000100327 3634 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Vps28Q9D1C8 Jup-202ENSMUST00000107403 2386 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
Vps28Q9D1C8 Tmem108-204ENSMUST00000189588 2850 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Vps28Q9D1C8 Phykpl-201ENSMUST00000020625 1609 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
Vps28Q9D1C8 Map4-201ENSMUST00000035055 6091 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
Vps28Q9D1C8 Lmnb1-201ENSMUST00000025486 2843 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Vps28Q9D1C8 Nat8f7-201ENSMUST00000160534 1822 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
Vps28Q9D1C8 Gm3045-201ENSMUST00000212844 1825 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
Vps28Q9D1C8 Gm7901-201ENSMUST00000120430 1597 ntBASIC15.5■□□□□ 0.07
Vps28Q9D1C8 Llgl1-201ENSMUST00000052346 4303 ntAPPRIS P4 TSL 1 (best) BASIC15.5■□□□□ 0.07
Vps28Q9D1C8 Rpl13-ps5-201ENSMUST00000117813 630 ntBASIC15.5■□□□□ 0.07
Vps28Q9D1C8 Tsen15-205ENSMUST00000162371 431 ntTSL 5 BASIC15.5■□□□□ 0.07
Vps28Q9D1C8 Mir3113-201ENSMUST00000175478 76 ntBASIC15.5■□□□□ 0.07
Vps28Q9D1C8 1500015A07Rik-203ENSMUST00000184678 890 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Vps28Q9D1C8 Avpi1-201ENSMUST00000018965 1044 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Vps28Q9D1C8 Gm44596-201ENSMUST00000204223 647 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
Vps28Q9D1C8 Cmtm3-204ENSMUST00000212081 850 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
Vps28Q9D1C8 Frmd5-213ENSMUST00000212518 922 ntTSL 5 BASIC15.5■□□□□ 0.07
Vps28Q9D1C8 Plpp2-205ENSMUST00000218241 825 ntAPPRIS ALT2 TSL 3 BASIC15.5■□□□□ 0.07
Vps28Q9D1C8 Lsmem1-201ENSMUST00000095760 1213 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Vps28Q9D1C8 Tead4-201ENSMUST00000006311 3076 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Vps28Q9D1C8 Mllt11-201ENSMUST00000065482 1923 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Vps28Q9D1C8 Tomm34-201ENSMUST00000018466 2302 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
Vps28Q9D1C8 Ripk3-203ENSMUST00000178399 1865 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Vps28Q9D1C8 Snx14-206ENSMUST00000173039 2970 ntTSL 5 BASIC15.5■□□□□ 0.07
Vps28Q9D1C8 Gm8909-203ENSMUST00000173353 1428 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
Vps28Q9D1C8 Fam84b-201ENSMUST00000100635 5565 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Vps28Q9D1C8 Kif12-205ENSMUST00000156618 2258 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
Vps28Q9D1C8 Zgpat-201ENSMUST00000029105 2293 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Vps28Q9D1C8 Slc45a4-204ENSMUST00000132607 2457 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Vps28Q9D1C8 Wipi1-201ENSMUST00000047186 3338 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Vps28Q9D1C8 Zfp334-201ENSMUST00000103084 8205 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Vps28Q9D1C8 Zbtb46-205ENSMUST00000180222 2014 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Vps28Q9D1C8 Grin3b-201ENSMUST00000045085 3283 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Vps28Q9D1C8 Smpd1-201ENSMUST00000046983 2412 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Vps28Q9D1C8 Des-201ENSMUST00000027409 3028 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Vps28Q9D1C8 Wfikkn1-201ENSMUST00000095487 1981 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Vps28Q9D1C8 Atxn7-202ENSMUST00000223714 2954 ntAPPRIS ALT2 BASIC15.49■□□□□ 0.07
Vps28Q9D1C8 Smarcd1-201ENSMUST00000023759 3153 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Vps28Q9D1C8 Cdh11-201ENSMUST00000075190 5647 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Vps28Q9D1C8 Sorbs1-213ENSMUST00000225153 3589 ntAPPRIS P4 BASIC15.49■□□□□ 0.07
Vps28Q9D1C8 Rfx5-202ENSMUST00000107253 4367 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Vps28Q9D1C8 Rps6kl1-201ENSMUST00000019379 2304 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Vps28Q9D1C8 Rcor1-202ENSMUST00000116388 2720 ntAPPRIS P2 TSL 1 (best) BASIC15.49■□□□□ 0.07
Vps28Q9D1C8 Hacd3-201ENSMUST00000036615 2709 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Vps28Q9D1C8 Sgms1-201ENSMUST00000099514 3665 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Vps28Q9D1C8 Arfgap2-202ENSMUST00000080008 3068 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Vps28Q9D1C8 Phactr2-203ENSMUST00000105545 8556 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
Vps28Q9D1C8 Dnm1l-201ENSMUST00000023477 4017 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Vps28Q9D1C8 Vps25-203ENSMUST00000100414 1220 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Vps28Q9D1C8 Lyrm1-203ENSMUST00000106517 1279 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Vps28Q9D1C8 Izumo1r-203ENSMUST00000117620 1095 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Vps28Q9D1C8 Edn3-203ENSMUST00000140908 731 ntAPPRIS ALT2 TSL 5 BASIC15.49■□□□□ 0.07
Vps28Q9D1C8 1700108N11Rik-201ENSMUST00000153051 917 ntTSL 2 BASIC15.49■□□□□ 0.07
Vps28Q9D1C8 Grtp1-201ENSMUST00000165605 1271 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Vps28Q9D1C8 4930556N13Rik-201ENSMUST00000173677 1034 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Vps28Q9D1C8 Mir8117-201ENSMUST00000184773 107 ntBASIC15.49■□□□□ 0.07
Vps28Q9D1C8 Mir7036b-201ENSMUST00000184791 63 ntBASIC15.49■□□□□ 0.07
Retrieved 100 of 76,532 protein–RNA pairs in 26 ms